TCONS_00036765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036765
Unique NameTCONS_00036765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036765 ID=TCONS_00036765|Name=TCONS_00036765|organism=Clytia hemisphaerica|type=transcript|length=474bp
GGTTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAGTCA
ATCTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTC
AAGCGGCAAGagtaaatgtttgaaaaaattcaaagagaAGTTCAAGaaag
agatttcaaaaatgattgcATATGAAAGTATTGAGAACACCCTGGAAAAA
GTTGGAAATGATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTT
gaatgaaagtttcaaaaaattagCTGATCTTACAGCTACTGCCGAGGACA
ATACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATGAT
GAAGTTGAAGATGAAGTATTGCACCAGCCCCGCAAAAAGTTCAAGTGGAC
AATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaatca
aatggtTAGAACATGTCAATAAAt
Run BLAST on NCBI

protein sequence of TCONS_00036765-protein

>TCONS_00036765-protein ID=TCONS_00036765-protein|Name=TCONS_00036765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
FWSPVWEVVMFSMEKSIWTQVKECLKPVLKKKSSGKSKCLKKFKEKFKKE
ISKMIAYESIENTLEKVGNDWSSKYKVTLKLTLNESFKKLADLTATAEDN
TSTNDDTTGTPEEKDDEVEDEVLHQPRKKFKWTIQDDSGRKLSNAKNQIK
WLEHVNK
Run BLAST on NCBI

transcript from alignment at sc0001510:34718..38308+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036765 ID=TCONS_00036765|Name=TCONS_00036765|organism=Clytia hemisphaerica|type=transcript|length=3591bp|location=Sequence derived from alignment at sc0001510:34718..38308+ (Clytia hemisphaerica)
GGTTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAGTGT
AAGAAACTTTTGTTTATAAGCATGTCATTTACTTTTTCATTGACAGGATA
TTGGCATGATTCGAATGGTTTCCCTCAGTTTCCCTAGCTCTCATAATGTt
tcgaaaattgctaaaaaatagGTATTCAACGCCAGAGAACCAATCAAGTA
TATAATATTGCATATCTATCAAATCAATCAATCCAAATTAAATGCAATCA
AATACAATTAAATATTACACAGGAATTGACCATTCAATTAGAGAGCTttg
acaaaagattttctttttttaacagCTTGATGCTGTTAAGAAGGGGAGTG
GTATAGCAGGTCTGTCGATAAAAAagtcagaaagaaaaagaaattctcat
ttagattgaaacatttataaatcAGCTTGAAATTTCCCAATCGACTTCTT
CGAAGTGTCTTGTTCCCAAAAAGCGTGACAAAAATAATCTGTGTATGTCA
GCAGCGGTCACTTTGAATAAATTTTGGGTATTAGAATTGGAGGCCCGGCT
CAAAACAACATGTCCTCTGTGCAAAAGGAATTGCGTCAAATATGACGAAG
TGAAAGAATATAAAAAGAACATTGTTCTTCATGGTTGGGTCATATCCTTT
AGATGACAtattaaaacttttcaaagtgaaatttgctaaaagattttttc
aagctgttaatgaaaaataaaatcttttgtcgaAGGCCTCTTATGGTTGA
caatagcctgggaatccaatcGTCAAACTTTGTTCACATTCCAGATTTGT
GATGTTTTTGTTAATAATATTTGACGCTTGGAAGAAGCAACTCGATTGCA
GGGATTCCAGCACAGCTGGTGTAGGACAGAGTCCTGGTGGGAGAAGTCCC
AAGAAAATTATGCCTTTTTGCGTAATTGAATGCTTATAATATAAATGCTT
ATAAtatatttgaaaacatttttcactcaattttcttttttccaaattta
tgtTACATAAAGATTGAGTTCCAAATCTAAAATCTCAAAGATTCAGAAAA
CCCTAAAAATATGCCTCAGGAGTGCTTAATTAACCATTATGGATTTACAA
CGGGTGAATTTTTTGCAAAGATCTTTCCACATCTTCAGAATCATACTGTA
TACTGTATTCATAAAGGCCTTTCTACATCTTCCTAAGAAGGCTTTATTAA
TTAATACCCACtcaagaaaaaatattgcaACTTAAATCTCTCGCAGTTCA
GCGCAGTTCtgttaagttttgaaaaaaaattccaaatttggaaaGATGGA
ATTTCCACTTGGTTAAAAAATTCTTACGCATCTCTCCACATTGAATTTAG
AATGGATGCAAAATgaatttatttctgatttctcCATGATAATCTTCTAG
TCATGGAGACTTACCAGGGTTGGTACTTGGGCAAAAGGGGTATATATACA
GGAATGTGCCACTGGTTAGGGTATATACCCTTTTTTCACCATAGGGTTCC
CTTGCAAAAACACTGAAATAGAAAGATCAGTCCAATTTTGGGAATAAAAC
TTTGGGAATAAAAAATAGAACATATAACAGTAAGAATTTcggcaacattt
tttcaaaaattgagctGGAACACTCTGGTCATGATTTTACTGAATCATGA
TTGAAAATTCtggaaaatttaactttttaggGTAAAAATACCATTTATTT
CTAAATAAAACATTGAAGTTGAAGGACTTGGCAGTTCTATTTCTTTGTTA
TTATTTGTTTTGGCACGTCCAGGATCTAGCTCAGGGTCAATCTCTTTTAA
TTTGGTAGTGTGAGGACAGCCAGTTCTACACCTTCTTTTCTTTTGCTTCT
ACATCTTTTTTGTGTTTATTGTAATAAAATGCTCTGTTTTCAGAAGTGTC
AGGCCATTCACTACTCAAAGGGATGAACTTTATTCTCTACATTAAAATTT
TGGCTCAAAAGCAACAACATCAAAAGTTAAAGCAGAATAAGCATTTGGTT
GGTCTTtctcattttattttaatgtttttactgcctcttgttttgttttt
ctatgtTTGTAAAACCAAGATTGGATAATTAGttcaaatcaagaaaatat
ACACATTAAGTCTAGGCTAATCATGTCGATATTCAGCTACAATTTATCTT
TGATACCACCGTATAATTATTAATTACCtttttttttgtattgtttCAGC
AATCTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGT
CAAGCGGCAAGagtaaatgtttgaaaaaattcaaagagaAGTTCAAGGTT
AGTATATTCATCGTCAGATAAATTGAATCAGCTATTTATCCCTTGTTTAT
TTCTTTATGAATTTCTGCATATTGcagtaaattaactgaaaacaTTCCAT
TATTTCAATAGaaagagatttcaaaaatgattgcATATGAAAGTATTGAG
AACACCCTGGAAAAAGTTGGAAATGATTGGTCATCTAAGTACAAAGTAAG
TGATATTGTCATCTAAGTACAAAGTAAGTGATATTGCCTTGAGGGtcatt
tgttttggttaaaagtGAGATCAATGATGAGttattaattgtttttttca
ttcttgatattttctacatttttctAGGTAACCTTAAAGCTTACTTTgaa
tgaaagtttcaaaaaattagCTGATCTTACAGCTACTGCCGAGGTAAGCT
TGGTCTTTTACAGAGTTTCAGTTCCCTCCATCTGAGTTCTTTAAATCCCC
AATCCCCCCTCGCACTAACAGTTTCCTTTGGGATTCCctccccaggcttg
gccccctaaaATAAGTGAAATGTTTATTGAAAATGCTCTTGTACTGTATT
GTCAAATTGTTTACTCGTTAAAAACAATGATGAATCTATGCATTTCATCC
ATTCTTTTTTGTAGGACAATACATCGACAAATGATGACACAACTGGTACA
CCAGAAGAGAAAGATGATGAAGTTGAAGATGAAGTAATTTCTTAGTTTCT
AGTTCTTTTTTTAAAGGCCTTTCCAATTTTCAACAGTTACAAGTAGTTTT
CGTTACGCtctgttaaaaaaaaagagGTAGTTTTCGTTACGCTctgttaa
aaaaaaaggaaataagtTTTAAAATCCTAAAGATGGTGAAATAgtatgat
gatttttttgggtTTTATGGAATCCTGATAAAACGATTCTGTATGACAAA
GTAGTAATTGTGAATGAAAACAGCTGTAATGGATTAAACAGTGTCAGAAG
ATTGCAATGTAAAGAACGGAAGCAATTTCTACAAAAGCTGCATCTTCTAA
AGACTGCCATTATtggaaatttaaattaaaacttCAATCTTTNAAAACAG
CTGTAATGGATTAAACAGTGTCAGAAGATTGCAATGTAAAGAACAGAAGC
AATTTTTACAAAAGCTGCATCTTCTAAAGACTGCCATTATtggaaattta
aattaaaacttCAATCTTTGCTTATTTGTTAGGTATTGCACCAGCCCCGC
AAAAAGTTCAAGTGGACAATACAGGATGATAGTGGGCGAAAGCTCTCAAA
TgcgaaaaatcaaatcaaatggtTAGAACATGTCAATAAAt

Coding sequence (CDS) from alignment at sc0001510:34718..38308+

>TCONS_00036765 ID=TCONS_00036765|Name=TCONS_00036765|organism=Clytia hemisphaerica|type=CDS|length=2826bp|location=Sequence derived from alignment at sc0001510:34718..38308+ (Clytia hemisphaerica)
TTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAGTCAAT
CTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAA
GCGGCAAGagtaaatgtttgaaaaaattcaaagagaAGTTCAAGaaagag
atttcaaaaatgattgcATATGAAAGTATTGAGAACACCCTGGAAAAAGT
TGGAAATGATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTga
atgaaagtttcaaaaaattagCTGATCTTACAGCTACTGCCGAGGACAAT
ACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATGATGA
AGTTGAAGATGAAGTATTGCACCAGCCCCGCAAAAAGTTCAAGTGGACAA
TACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaatcaaa
tggtTAGAACATGTCAATAAATTTTGGTCTCCTGTTTGGGAAGTTGTAAT
GTTTTCAATGGAAAAGTCAATCTGGACTCAGGTCAAAGAGTGTTTGAAAC
CTGTCCTCAAGAAAAAGTCAAGCGGCAAGagtaaatgtttgaaaaaattc
aaagagaAGTTCAAGaaagagatttcaaaaatgattgcATATGAAAGTAT
TGAGAACACCCTGGAAAAAGTTGGAAATGATTGGTCATCTAAGTACAAAG
TAACCTTAAAGCTTACTTTgaatgaaagtttcaaaaaattagCTGATCTT
ACAGCTACTGCCGAGGACAATACATCGACAAATGATGACACAACTGGTAC
ACCAGAAGAGAAAGATGATGAAGTTGAAGATGAAGTATTGCACCAGCCCC
GCAAAAAGTTCAAGTGGACAATACAGGATGATAGTGGGCGAAAGCTCTCA
AATgcgaaaaatcaaatcaaatggtTAGAACATGTCAATAAATTTTGGTC
TCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAGTCAATCTGGACTC
AGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAAGCGGCAAG
agtaaatgtttgaaaaaattcaaagagaAGTTCAAGaaagagatttcaaa
aatgattgcATATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATG
ATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaatgaaagt
ttcaaaaaattagCTGATCTTACAGCTACTGCCGAGGACAATACATCGAC
AAATGATGACACAACTGGTACACCAGAAGAGAAAGATGATGAAGTTGAAG
ATGAAGTATTGCACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAGGAT
GATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaatcaaatggtTAGA
ACATGTCAATAAATTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAA
TGGAAAAGTCAATCTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTC
AAGAAAAAGTCAAGCGGCAAGagtaaatgtttgaaaaaattcaaagagaA
GTTCAAGaaagagatttcaaaaatgattgcATATGAAAGTATTGAGAACA
CCCTGGAAAAAGTTGGAAATGATTGGTCATCTAAGTACAAAGTAACCTTA
AAGCTTACTTTgaatgaaagtttcaaaaaattagCTGATCTTACAGCTAC
TGCCGAGGACAATACATCGACAAATGATGACACAACTGGTACACCAGAAG
AGAAAGATGATGAAGTTGAAGATGAAGTATTGCACCAGCCCCGCAAAAAG
TTCAAGTGGACAATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaa
aaatcaaatcaaatggtTAGAACATGTCAATAAATTTTGGTCTCCTGTTT
GGGAAGTTGTAATGTTTTCAATGGAAAAGTCAATCTGGACTCAGGTCAAA
GAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAAGCGGCAAGagtaaatg
tttgaaaaaattcaaagagaAGTTCAAGaaagagatttcaaaaatgattg
cATATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATGATTGGTCA
TCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaatgaaagtttcaaaaa
attagCTGATCTTACAGCTACTGCCGAGGACAATACATCGACAAATGATG
ACACAACTGGTACACCAGAAGAGAAAGATGATGAAGTTGAAGATGAAGTA
TTGCACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAGGATGATAGTGG
GCGAAAGCTCTCAAATgcgaaaaatcaaatcaaatggtTAGAACATGTCA
ATAAATTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAG
TCAATCTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAA
GTCAAGCGGCAAGagtaaatgtttgaaaaaattcaaagagaAGTTCAAGa
aagagatttcaaaaatgattgcATATGAAAGTATTGAGAACACCCTGGAA
AAAGTTGGAAATGATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTAC
TTTgaatgaaagtttcaaaaaattagCTGATCTTACAGCTACTGCCGAGG
ACAATACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGAT
GATGAAGTTGAAGATGAAGTATTGCACCAGCCCCGCAAAAAGTTCAAGTG
GACAATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaa
tcaaatggtTAGAACATGTCAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021712XLOC_021712Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036765-proteinTCONS_00036765-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036765-exon-sc0001510-1491911889:34718..34765TCONS_00036765-exon-sc0001510-1491911889:34718..34765Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1510915933:34718..34765TCONS_00036765-exon-sc0001510-1510915933:34718..34765Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1575043694:34718..34765TCONS_00036765-exon-sc0001510-1575043694:34718..34765Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1491911889:36917..37014TCONS_00036765-exon-sc0001510-1491911889:36917..37014Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1510915933:36917..37014TCONS_00036765-exon-sc0001510-1510915933:36917..37014Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1575043694:36917..37014TCONS_00036765-exon-sc0001510-1575043694:36917..37014Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1491911889:37129..37212TCONS_00036765-exon-sc0001510-1491911889:37129..37212Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1510915933:37129..37212TCONS_00036765-exon-sc0001510-1510915933:37129..37212Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1575043694:37129..37212TCONS_00036765-exon-sc0001510-1575043694:37129..37212Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1491911889:37345..37410TCONS_00036765-exon-sc0001510-1491911889:37345..37410Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1510915933:37345..37410TCONS_00036765-exon-sc0001510-1510915933:37345..37410Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1575043694:37345..37410TCONS_00036765-exon-sc0001510-1575043694:37345..37410Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1491911889:37632..37700TCONS_00036765-exon-sc0001510-1491911889:37632..37700Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1510915933:37632..37700TCONS_00036765-exon-sc0001510-1510915933:37632..37700Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1575043694:37632..37700TCONS_00036765-exon-sc0001510-1575043694:37632..37700Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1491911889:38200..38308TCONS_00036765-exon-sc0001510-1491911889:38200..38308Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1510915933:38200..38308TCONS_00036765-exon-sc0001510-1510915933:38200..38308Clytia hemisphaericaexon
TCONS_00036765-exon-sc0001510-1575043694:38200..38308TCONS_00036765-exon-sc0001510-1575043694:38200..38308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001510supercontigsc0001510:34718..38308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	12.7616	11.7683	13.237	18.4073	4.45135	5.10819	2.68833	3.9608	2.48488	2.57159	0	0	0	0	0	0	0.129441	0	0	0.139556	1.25001	1.6042	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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