TCONS_00036764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036764
Unique NameTCONS_00036764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036764 ID=TCONS_00036764|Name=TCONS_00036764|organism=Clytia hemisphaerica|type=transcript|length=941bp
ATAATTGGTTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAA
AAGTGTAAGAAACTTTTGTTTATAAGCATGTCATTTACTTTTTCATTGAC
AGGATATTGGCATGATTCGAATGGTTTCCCTCAGTTTCCCTAGCTCTCAT
AATGTttcgaaaattgctaaaaaatagGTATTCAACGCCAGAGAACCAAT
CAAGTATATAATATTGCATATCTATCAAATCAATCAATCCAAATTAAATG
CAATCAAATACAATTAAATATTACACAGGAATTGACCATTCAATTAGAGA
GCTttgacaaaagattttctttttttaacagCTTGATGCTGTTAAGAAGG
GGAGTGGTATAGCAGGTCTGTCGATAAAAAagtcagaaagaaaaagaaat
tctcatttagattgaaacatttataaatcAGCTTGAAATTTCCCAATCGA
CTTCTTCGAAGTGTCTTGTTCCCAAAAAGCGTGACAAAAATAATCTGTGT
ATGTCAGCAGCGGTCACTTTGAATAAATTTTGGGTATTAGAATTGGAGGC
CCGGCTCAAAACAACATGTCCTCTGTGCAAAAGGAATTGCGTCAAATATG
ACGAAGTGAAAGAATATAAAAAGAACATTGTTCTTCATGGTTGGGTCATA
TCCTTTAGATGACAtattaaaacttttcaaagtgaaatttgctaaaagat
tttttcaagctgttaatgaaaaataaaatcttttgtcgaAGGCCTCTTAT
GGTTGAcaatagcctgggaatccaatcGTCAAACTTTGTTCACATTCCAG
ATTTGTGATGTTTTTGTTAATAATATTTGACGCTTGGAAGAAGCAACTCG
ATTGCAGGGATTCCAGCACAGCTGGTGTAGGACAGAGTCCTGGTGGGAGA
AGTCCCAAGAAAATTATGCCTTTTTGCGTAATTGAATGCTT
Run BLAST on NCBI

transcript from alignment at sc0001510:34712..35652+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036764 ID=TCONS_00036764|Name=TCONS_00036764|organism=Clytia hemisphaerica|type=transcript|length=941bp|location=Sequence derived from alignment at sc0001510:34712..35652+ (Clytia hemisphaerica)
ATAATTGGTTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAA AAGTGTAAGAAACTTTTGTTTATAAGCATGTCATTTACTTTTTCATTGAC AGGATATTGGCATGATTCGAATGGTTTCCCTCAGTTTCCCTAGCTCTCAT AATGTttcgaaaattgctaaaaaatagGTATTCAACGCCAGAGAACCAAT CAAGTATATAATATTGCATATCTATCAAATCAATCAATCCAAATTAAATG CAATCAAATACAATTAAATATTACACAGGAATTGACCATTCAATTAGAGA GCTttgacaaaagattttctttttttaacagCTTGATGCTGTTAAGAAGG GGAGTGGTATAGCAGGTCTGTCGATAAAAAagtcagaaagaaaaagaaat tctcatttagattgaaacatttataaatcAGCTTGAAATTTCCCAATCGA CTTCTTCGAAGTGTCTTGTTCCCAAAAAGCGTGACAAAAATAATCTGTGT ATGTCAGCAGCGGTCACTTTGAATAAATTTTGGGTATTAGAATTGGAGGC CCGGCTCAAAACAACATGTCCTCTGTGCAAAAGGAATTGCGTCAAATATG ACGAAGTGAAAGAATATAAAAAGAACATTGTTCTTCATGGTTGGGTCATA TCCTTTAGATGACAtattaaaacttttcaaagtgaaatttgctaaaagat tttttcaagctgttaatgaaaaataaaatcttttgtcgaAGGCCTCTTAT GGTTGAcaatagcctgggaatccaatcGTCAAACTTTGTTCACATTCCAG ATTTGTGATGTTTTTGTTAATAATATTTGACGCTTGGAAGAAGCAACTCG ATTGCAGGGATTCCAGCACAGCTGGTGTAGGACAGAGTCCTGGTGGGAGA AGTCCCAAGAAAATTATGCCTTTTTGCGTAATTGAATGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021712XLOC_021712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036764-exon-sc0001510-1491911889:34712..35652TCONS_00036764-exon-sc0001510-1491911889:34712..35652Clytia hemisphaericaexon
TCONS_00036764-exon-sc0001510-1510915933:34712..35652TCONS_00036764-exon-sc0001510-1510915933:34712..35652Clytia hemisphaericaexon
TCONS_00036764-exon-sc0001510-1575043694:34712..35652TCONS_00036764-exon-sc0001510-1575043694:34712..35652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001510supercontigsc0001510:34712..35652 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.11112 1.03297 0.498494 0.52502 0.408421 0.303537 0.441931 0.355065 0.128935 0.334751 0.0550422 0 0 0 0 0 0 0 0 0 0.468331 1.43969 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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