TCONS_00036763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036763
Unique NameTCONS_00036763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036763 ID=TCONS_00036763|Name=TCONS_00036763|organism=Clytia hemisphaerica|type=transcript|length=464bp
TATTGAAAAAGATCTATTCATGTCGACCTATTTCGAAACAATCTGGACTC
AGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAAGCGGCAAG
agtaaatgtttgaaaaaattcaaagagaAGTTCAAGaaagagatttcaaa
aatgattgcATATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATG
ATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaatgaaagt
ttcaaaaaattagCTGATCTTACAGCTACTGCCGAGGACAATACATCGAC
AAATGATGACACAACTGGTACACCAGAAGAGAAAGATGATGAAGTTGAAG
ATGAAGTATTGCACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAGGAT
GATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaatcaaatggtTAGA
ACATGTCAATAAAt
Run BLAST on NCBI

transcript from alignment at sc0001510:31667..38308+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036763 ID=TCONS_00036763|Name=TCONS_00036763|organism=Clytia hemisphaerica|type=transcript|length=6642bp|location=Sequence derived from alignment at sc0001510:31667..38308+ (Clytia hemisphaerica)
TATTGAAAAAGATCTATTCATGTCGACCTATTTCGAAAGtaagtctttta
tttttttaagaaaatagcTGAACATGTCTGATTAAATTTTGCCACTGCCA
TAATCTTCACTTTTTAAGGAAAGCAAttatttcttcaatcaaggctcCCT
CCTTCTGCTGTTGTGGTGTATATAATATGTGGTTGTGGTTATTGTTATCA
AGACATTATTAAGTGTacttgaatttttcttcttgaGACTTCATTGGAGA
CATCCTAGACACAATTCCTCAGAGACAtgtaaaattgtgaaaaatggGAG
GTCATACGTACAGATGTCCGACACTTTGTCACCgaccgacactttctagt
ccgacagcaATAATATCCGACAATGTCAATGTATATAATTGACAGTTGCT
TCAGCTTTCTGAAAAAGATTTGTCCCACAACGAGTGATAAAAACAATTAG
TGTTTTGGGAAAAACAACATCGGGCTTTATCATGGTATATACACCGTCAA
GTCAACTGTTCTAACTTGAGATGAGTGGTGTCGCAACATAAAGGATCGTT
GATTTCTGGATTGTAtttccagacgatgtcaatcgaccACATATCGAACG
CAGTCGAACGTAattggaattttcgttcgattccgctcgattgacatcgt
ctgggtATTTTCACTTATATACTGTTTAAATCTCTTTAACAAAACGTTTA
TCAATCAAAAACTTTCACCATCCCATTATCACAACCAATATCACAGACAa
tataccaaaaaaataatagatttgtgaatgataaaaagttttcgaacaCT
ACTTGAACATTTGTGGAActtaggcggcaatcaaaaatatattccatTCG
GGTCCTAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGACGATTTTACCGACTT
TCCGAATCGGGTTTTCTTGTAAATCAACAGTCGGCCCGAAcgcaacatat
ttttgattgccgcaAACTAATCTAAATATTCAAGAAATTTTTGCCATAAA
GTTTGATTATTGTTTGATTCGGTTTTGTAATGGAACACCTATAGTTTGAT
TAAAACTTTGATAGAGTTCAATGATTCCAGTAAGAAAATCGGTACAATAC
AGTAAGATCAGGTTGAAATCGCCTGGTTTTCCGTAATTCTGTAATTTTTA
AATGCCGTTGGCAATACATTCAAAATGGTGCACTGAAAGTGAGATATAAT
TGGTTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAGTG
TAAGAAACTTTTGTTTATAAGCATGTCATTTACTTTTTCATTGACAGGAT
ATTGGCATGATTCGAATGGTTTCCCTCAGTTTCCCTAGCTCTCATAATGT
ttcgaaaattgctaaaaaatagGTATTCAACGCCAGAGAACCAATCAAGT
ATATAATATTGCATATCTATCAAATCAATCAATCCAAATTAAATGCAATC
AAATACAATTAAATATTACACAGGAATTGACCATTCAATTAGAGAGCTtt
gacaaaagattttctttttttaacagCTTGATGCTGTTAAGAAGGGGAGT
GGTATAGCAGGTCTGTCGATAAAAAagtcagaaagaaaaagaaattctca
tttagattgaaacatttataaatcAGCTTGAAATTTCCCAATCGACTTCT
TCGAAGTGTCTTGTTCCCAAAAAGCGTGACAAAAATAATCTGTGTATGTC
AGCAGCGGTCACTTTGAATAAATTTTGGGTATTAGAATTGGAGGCCCGGC
TCAAAACAACATGTCCTCTGTGCAAAAGGAATTGCGTCAAATATGACGAA
GTGAAAGAATATAAAAAGAACATTGTTCTTCATGGTTGGGTCATATCCTT
TAGATGACAtattaaaacttttcaaagtgaaatttgctaaaagatttttt
caagctgttaatgaaaaataaaatcttttgtcgaAGGCCTCTTATGGTTG
AcaatagcctgggaatccaatcGTCAAACTTTGTTCACATTCCAGATTTG
TGATGTTTTTGTTAATAATATTTGACGCTTGGAAGAAGCAACTCGATTGC
AGGGATTCCAGCACAGCTGGTGTAGGACAGAGTCCTGGTGGGAGAAGTCC
CAAGAAAATTATGCCTTTTTGCGTAATTGAATGCTTATAATATAAATGCT
TATAAtatatttgaaaacatttttcactcaattttcttttttccaaattt
atgtTACATAAAGATTGAGTTCCAAATCTAAAATCTCAAAGATTCAGAAA
ACCCTAAAAATATGCCTCAGGAGTGCTTAATTAACCATTATGGATTTACA
ACGGGTGAATTTTTTGCAAAGATCTTTCCACATCTTCAGAATCATACTGT
ATACTGTATTCATAAAGGCCTTTCTACATCTTCCTAAGAAGGCTTTATTA
ATTAATACCCACtcaagaaaaaatattgcaACTTAAATCTCTCGCAGTTC
AGCGCAGTTCtgttaagttttgaaaaaaaattccaaatttggaaaGATGG
AATTTCCACTTGGTTAAAAAATTCTTACGCATCTCTCCACATTGAATTTA
GAATGGATGCAAAATgaatttatttctgatttctcCATGATAATCTTCTA
GTCATGGAGACTTACCAGGGTTGGTACTTGGGCAAAAGGGGTATATATAC
AGGAATGTGCCACTGGTTAGGGTATATACCCTTTTTTCACCATAGGGTTC
CCTTGCAAAAACACTGAAATAGAAAGATCAGTCCAATTTTGGGAATAAAA
CTTTGGGAATAAAAAATAGAACATATAACAGTAAGAATTTcggcaacatt
ttttcaaaaattgagctGGAACACTCTGGTCATGATTTTACTGAATCATG
ATTGAAAATTCtggaaaatttaactttttaggGTAAAAATACCATTTATT
TCTAAATAAAACATTGAAGTTGAAGGACTTGGCAGTTCTATTTCTTTGTT
ATTATTTGTTTTGGCACGTCCAGGATCTAGCTCAGGGTCAATCTCTTTTA
ATTTGGTAGTGTGAGGACAGCCAGTTCTACACCTTCTTTTCTTTTGCTTC
TACATCTTTTTTGTGTTTATTGTAATAAAATGCTCTGTTTTCAGAAGTGT
CAGGCCATTCACTACTCAAAGGGATGAACTTTATTCTCTACATTAAAATT
TTGGCTCAAAAGCAACAACATCAAAAGTTAAAGCAGAATAAGCATTTGGT
TGGTCTTtctcattttattttaatgtttttactgcctcttgttttgtttt
tctatgtTTGTAAAACCAAGATTGGATAATTAGttcaaatcaagaaaata
tACACATTAAGTCTAGGCTAATCATGTCGATATTCAGCTACAATTTATCT
TTGATACCACCGTATAATTATTAATTACCtttttttttgtattgtttCAG
CAATCTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAG
TCAAGCGGCAAGagtaaatgtttgaaaaaattcaaagagaAGTTCAAGGT
TAGTATATTCATCGTCAGATAAATTGAATCAGCTATTTATCCCTTGTTTA
TTTCTTTATGAATTTCTGCATATTGcagtaaattaactgaaaacaTTCCA
TTATTTCAATAGaaagagatttcaaaaatgattgcATATGAAAGTATTGA
GAACACCCTGGAAAAAGTTGGAAATGATTGGTCATCTAAGTACAAAGTAA
GTGATATTGTCATCTAAGTACAAAGTAAGTGATATTGCCTTGAGGGtcat
ttgttttggttaaaagtGAGATCAATGATGAGttattaattgtttttttc
attcttgatattttctacatttttctAGGTAACCTTAAAGCTTACTTTga
atgaaagtttcaaaaaattagCTGATCTTACAGCTACTGCCGAGGTAAGC
TTGGTCTTTTACAGAGTTTCAGTTCCCTCCATCTGAGTTCTTTAAATCCC
CAATCCCCCCTCGCACTAACAGTTTCCTTTGGGATTCCctccccaggctt
ggccccctaaaATAAGTGAAATGTTTATTGAAAATGCTCTTGTACTGTAT
TGTCAAATTGTTTACTCGTTAAAAACAATGATGAATCTATGCATTTCATC
CATTCTTTTTTGTAGGACAATACATCGACAAATGATGACACAACTGGTAC
ACCAGAAGAGAAAGATGATGAAGTTGAAGATGAAGTAATTTCTTAGTTTC
TAGTTCTTTTTTTAAAGGCCTTTCCAATTTTCAACAGTTACAAGTAGTTT
TCGTTACGCtctgttaaaaaaaaagagGTAGTTTTCGTTACGCTctgtta
aaaaaaaaggaaataagtTTTAAAATCCTAAAGATGGTGAAATAgtatga
tgatttttttgggtTTTATGGAATCCTGATAAAACGATTCTGTATGACAA
AGTAGTAATTGTGAATGAAAACAGCTGTAATGGATTAAACAGTGTCAGAA
GATTGCAATGTAAAGAACGGAAGCAATTTCTACAAAAGCTGCATCTTCTA
AAGACTGCCATTATtggaaatttaaattaaaacttCAATCTTTNAAAACA
GCTGTAATGGATTAAACAGTGTCAGAAGATTGCAATGTAAAGAACAGAAG
CAATTTTTACAAAAGCTGCATCTTCTAAAGACTGCCATTATtggaaattt
aaattaaaacttCAATCTTTGCTTATTTGTTAGGTATTGCACCAGCCCCG
CAAAAAGTTCAAGTGGACAATACAGGATGATAGTGGGCGAAAGCTCTCAA
ATgcgaaaaatcaaatcaaatggtTAGAACATGTCAATAAAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021712XLOC_021712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036763-exon-sc0001510-1491911889:31667..31704TCONS_00036763-exon-sc0001510-1491911889:31667..31704Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1510915933:31667..31704TCONS_00036763-exon-sc0001510-1510915933:31667..31704Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1575043694:31667..31704TCONS_00036763-exon-sc0001510-1575043694:31667..31704Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1491911889:36917..37014TCONS_00036763-exon-sc0001510-1491911889:36917..37014Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1510915933:36917..37014TCONS_00036763-exon-sc0001510-1510915933:36917..37014Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1575043694:36917..37014TCONS_00036763-exon-sc0001510-1575043694:36917..37014Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1491911889:37129..37212TCONS_00036763-exon-sc0001510-1491911889:37129..37212Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1510915933:37129..37212TCONS_00036763-exon-sc0001510-1510915933:37129..37212Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1575043694:37129..37212TCONS_00036763-exon-sc0001510-1575043694:37129..37212Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1491911889:37345..37410TCONS_00036763-exon-sc0001510-1491911889:37345..37410Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1510915933:37345..37410TCONS_00036763-exon-sc0001510-1510915933:37345..37410Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1575043694:37345..37410TCONS_00036763-exon-sc0001510-1575043694:37345..37410Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1491911889:37632..37700TCONS_00036763-exon-sc0001510-1491911889:37632..37700Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1510915933:37632..37700TCONS_00036763-exon-sc0001510-1510915933:37632..37700Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1575043694:37632..37700TCONS_00036763-exon-sc0001510-1575043694:37632..37700Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1491911889:38200..38308TCONS_00036763-exon-sc0001510-1491911889:38200..38308Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1510915933:38200..38308TCONS_00036763-exon-sc0001510-1510915933:38200..38308Clytia hemisphaericaexon
TCONS_00036763-exon-sc0001510-1575043694:38200..38308TCONS_00036763-exon-sc0001510-1575043694:38200..38308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001510supercontigsc0001510:31667..38308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.000528268	0	1.87586	0.00183873	0	1.66786	0	0	0.219014	0.29135	0.266811	0.214102	0	0	0	0	0.159522	0	0	7.39896	0	0	0	0.0901295
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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