TCONS_00036759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036759
Unique NameTCONS_00036759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036759 ID=TCONS_00036759|Name=TCONS_00036759|organism=Clytia hemisphaerica|type=transcript|length=254bp
ATAtccgcttttgagaagacATGTACTCTTCACACTTCTTGTAAAATTTC
TCAACAACTTTAGAAATTATAACTATATATTTAAATATTGTAATCTCACC
AAATTTATCACAGTCAAAGTAAACAGAATCAGTGTCATCATTTTCGTCTA
AAAATTCAGGAACACTTGCAAACTCTTCTTGTAATTTGAAAACTTCCACC
AGATCTTCGACATTTGTGTTATCATAATGACTGGTCACATAAGCTAAAAA
GGCA
Run BLAST on NCBI

transcript from alignment at sc0001510:21597..21903+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036759 ID=TCONS_00036759|Name=TCONS_00036759|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0001510:21597..21903+ (Clytia hemisphaerica)
ATAtccgcttttgagaagacatgTACTCTTCACACTTCTTGTAAAATTTC
CCAACAACTTTAGAAATTATNACATGTACTCTTCACACTTCTTGTAAAAT
TTCTCAACAACTTTAGAAATTATAACTATATATTTAAATATTGTAATCTC
ACCAAATTTATCACAGTCAAAGTAAACAGAATCAGTGTCATCATTTTCGT
CTAAAAATTCAGGAACACTTGCAAACTCTTCTTGTAATTTGAAAACTTCC
ACCAGATCTTCGACATTTGTGTTATCATAATGACTGGTCACATAAGCTAA
AAAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021709XLOC_021709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036759-exon-sc0001510-1491911889:21597..21616TCONS_00036759-exon-sc0001510-1491911889:21597..21616Clytia hemisphaericaexon
TCONS_00036759-exon-sc0001510-1510915933:21597..21616TCONS_00036759-exon-sc0001510-1510915933:21597..21616Clytia hemisphaericaexon
TCONS_00036759-exon-sc0001510-1575043694:21597..21616TCONS_00036759-exon-sc0001510-1575043694:21597..21616Clytia hemisphaericaexon
TCONS_00036759-exon-sc0001510-1491911889:21670..21903TCONS_00036759-exon-sc0001510-1491911889:21670..21903Clytia hemisphaericaexon
TCONS_00036759-exon-sc0001510-1510915933:21670..21903TCONS_00036759-exon-sc0001510-1510915933:21670..21903Clytia hemisphaericaexon
TCONS_00036759-exon-sc0001510-1575043694:21670..21903TCONS_00036759-exon-sc0001510-1575043694:21670..21903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001510supercontigsc0001510:21597..21903 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43989	1.01379	0.815161	0	0	0.76721	0.925606	0	1.21337	1.44912	4.70847	3.61066	1.59424	0	0	0.877431	0	0	0	1.40491	0.109047	3.05574	1.60522	0	0	1.37972	0.987191	1.05356	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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