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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036739 ID=TCONS_00036739|Name=TCONS_00036739|organism=Clytia hemisphaerica|type=transcript|length=2336bp
CAAACAAAAGGTTTtggacttttcaaaaatacatgaaaCATTTTAGAGCA
AGCTCTAACCCATTTTTACCAGGGCCAATTTTGCTCTTATTGGATTTGGA
GACTTTTGGTCTTCAGGCCTCTTTTTGTCTGAGATGAAAGATTGAAGGTT
CAATGACTTTTGCACTTCAATATTTTCGAGAAGACATCTAACTAGACCTT
ATTCGAGATGGTTTATTCAACTATAAACAATTTTTCAGAGCTCTCTGGTG
CACCCACCACCCACCACCCACCAACTGTGTGGCTGAAGTTTGCCCCCTTT
CAGTCCTTGTAGACTAAATCCACAAAGTCTTCTAGCAAGCCTGTAGGTGt
attcttcaaaataataacTTGTGGTTCATTTGGCGAAGTTCCCAAGTGTC
AAAATGGTTTTTACTGTCACTattgaataagttttgaaaagtctacagaT
CTTTTGTTCATGATTGTAGCGTTTATATCTTATATTATGGGTCGACAACT
ACGACCAATGTAAGGTTTCGAATTTAGAAATAAATATCATGATGAAGAAA
ATTTGTGCAAAGTGACAAGTTTCCTACATCTAAATGCTAAAAAACAGACC
CCATTGCTTATACGGGACCCAATACACCTAATAAATGGATTGAGTCGGTG
TTGTATTTTAAGCCTTACTAACGTACTTTGTCTATAAGCAGGATAAGGTG
CAACGTGCGTAACATGCAGCTATGAATCGTTTATTAAAAAGAGTTCGATT
ACTTAACTTTAAAAATTCACTTGACTTAAAGGAGGAAGATGCCAATGAAA
GACTAACCTGGGAGAAATTTTCAgctaattttacaattttaacaGTGAGA
TGATTCCACCGGGTCCTTGATTCAGAGGAGTGCGGTTACTTTCCccattt
ttatatatttcagaGTGACTGACAAGGATGGCTGCAGACAGCACGGATTT
TTAATATTATATTATGGTTATTTATATAGTAGATCCAACATCAATGCTAG
AACTTTAGACCTTTACCAAATAAATTATACATTACATTATATTCattatc
atttttattatattaatttatatttatatttctaTACTTATATTTAAAGA
TTGAGTACCATGGTACCTTTGCGGCTTTTTGGCAACTTTATGTGAGATGA
TTTTTGTGAGTTTTCCTAAGGAATAATTTTGTTTGTGTTGaaattctttc
ttttgatatataacaCTTGTATATTTtgagaactttttttttcggatatt
ttttttcgaacatGTCGGACAAAAAATTGTCTTCATAAGTTGTTTGtgaa
tttattctatcaaaagtaattagTAATCTAATTACGAAAATGATATTAAG
AACCTGAAAAGATGAAGGATTTTTTTGACTTCTTTTTATCCAAGACAAAG
CGGAAAATCACCAAAACGAAGTACATCACTTTTGACCAGTCACTGTGGCA
GAAAACTATTGGGATCATACAAGATAAGTCTTGGTGGGTTTCACACGTTG
ATGAGTTTCCTCGGTAGTGTTGGAAAAGTTAACGATGGGGTCGGGTATAG
GAAGTTGTTTGAGGAATATACTGAGGATGCTGTAAAGCACATGACAACAG
GGAGGGTCTACGCTAGATCATTACGAGCTCATTTGAAGAGTAGTTCTTGG
TCGAAAAGGTTGACAGGAGGCGAGATTCTCTTTTGACCTTTTTTGGATAT
CGGAAGGAACTGATATTATCTTCTAAATCATTTAAATCATTTAAATTAGC
TGAgcaatttcaatgaaagtttTTCACGACAATTCTTTGCGATCTAGAAA
CAAATCACAGCAGAAAGCTTTTTAAAAGTTCACGTATGAGGTCCCGTAAA
TTCAAAAGGGCGCAAAATTGCGCAATATAGCATAATAGGATGTTACCTGA
AAATTTACGGAAAACATCATTGCAGTATTTGAAGTTTTGCGATGTTTTTG
GTAATTACTGTCATTAAAACTGAAATCaaattaatatctttaaatatttt
ttattttttgtaatggTAGCATTGCTCCGCAACCCGAATGGTTGTAGTTT
TTCAGTTTCTAGTTTTATGAAAACTTTGTTCAACTCGATTGTCAAAGTAC
AAAgacttctatttttcttttcagactAATAGACGAAGAAAGGGAAACAC
ATTTTGTTCTATTTTTTATCAACAATTAAATTAATTCAATTGCTTTTGCA
GCTCATGCGTCAGCTGGGAGACAACTGCTAGTAATTGATATTTTGAATCC
TAAAGGCAAGTAAAGGAAATGACACCCAaagagatttattttagatttac
aCCAGATATCTCGATAAAATACTATCGATTTCTATA Run BLAST on NCBI transcript from alignment at sc0001507:18415..20750 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036739 ID=TCONS_00036739|Name=TCONS_00036739|organism=Clytia hemisphaerica|type=transcript|length=2336bp|location=Sequence derived from alignment at sc0001507:18415..20750 (Clytia hemisphaerica)
TATAGAAATCGATAGTATTTTATCGAGATATCTGGtgtaaatctaaaata
aatctcttTGGGTGTCATTTCCTTTACTTGCCTTTAGGATTCAAAATATC
AATTACTAGCAGTTGTCTCCCAGCTGACGCATGAGCTGCAAAAGCAATTG
AATTAATTTAATTGTTGATAAAAAATAGAACAAAATGTGTTTCCCTTTCT
TCGTCTATTagtctgaaaagaaaaatagaagtcTTTGTACTTTGACAATC
GAGTTGAACAAAGTTTTCATAAAACTAGAAACTGAAAAACTACAACCATT
CGGGTTGCGGAGCAATGCTAccattacaaaaaataaaaaatatttaaaga
tattaatttGATTTCAGTTTTAATGACAGTAATTACCAAAAACATCGCAA
AACTTCAAATACTGCAATGATGTTTTCCGTAAATTTTCAGGTAACATCCT
ATTATGCTATATTGCGCAATTTTGCGCCCTTTTGAATTTACGGGACCTCA
TACGTGAACTTTTAAAAAGCTTTCTGCTGTGATTTGTTTCTAGATCGCAA
AGAATTGTCGTGAAaaactttcattgaaattgcTCAGCTAATTTAAATGA
TTTAAATGATTTAGAAGATAATATCAGTTCCTTCCGATATCCAAAAAAGG
TCAAAAGAGAATCTCGCCTCCTGTCAACCTTTTCGACCAAGAACTACTCT
TCAAATGAGCTCGTAATGATCTAGCGTAGACCCTCCCTGTTGTCATGTGC
TTTACAGCATCCTCAGTATATTCCTCAAACAACTTCCTATACCCGACCCC
ATCGTTAACTTTTCCAACACTACCGAGGAAACTCATCAACGTGTGAAACC
CACCAAGACTTATCTTGTATGATCCCAATAGTTTTCTGCCACAGTGACTG
GTCAAAAGTGATGTACTTCGTTTTGGTGATTTTCCGCTTTGTCTTGGATA
AAAAGAAGTCAAAAAAATCCTTCATCTTTTCAGGTTCTTAATATCATTTT
CGTAATTAGATTActaattacttttgatagaataaattcaCAAACAACTT
ATGAAGACAATTTTTTGTCCGACatgttcgaaaaaaaatatccgaaaaaa
aaagttctcaAAATATACAAGtgttatatatcaaaagaaagaatttCAAC
ACAAACAAAATTATTCCTTAGGAAAACTCACAAAAATCATCTCACATAAA
GTTGCCAAAAAGCCGCAAAGGTACCATGGTACTCAATCTTTAAATATAAG
TAtagaaatataaatataaattaatataataaaaatgataatGAATATAA
TGTAATGTATAATTTATTTGGTAAAGGTCTAAAGTTCTAGCATTGATGTT
GGATCTACTATATAAATAACCATAATATAATATTAAAAATCCGTGCTGTC
TGCAGCCATCCTTGTCAGTCACtctgaaatatataaaaatggGGAAAGTA
ACCGCACTCCTCTGAATCAAGGACCCGGTGGAATCATCTCACtgttaaaa
ttgtaaaattagcTGAAAATTTCTCCCAGGTTAGTCTTTCATTGGCATCT
TCCTCCTTTAAGTCAAGTGAATTTTTAAAGTTAAGTAATCGAACTCTTTT
TAATAAACGATTCATAGCTGCATGTTACGCACGTTGCACCTTATCCTGCT
TATAGACAAAGTACGTTAGTAAGGCTTAAAATACAACACCGACTCAATCC
ATTTATTAGGTGTATTGGGTCCCGTATAAGCAATGGGGTCTGTTTTTTAG
CATTTAGATGTAGGAAACTTGTCACTTTGCACAAATTTTCTTCATCATGA
TATTTATTTCTAAATTCGAAACCTTACATTGGTCGTAGTTGTCGACCCAT
AATATAAGATATAAACGCTACAATCATGAACAAAAGAtctgtagactttt
caaaacttattcaatAGTGACAGTAAAAACCATTTTGACACTTGGGAACT
TCGCCAAATGAACCACAAgttattattttgaagaataCACCTACAGGCTT
GCTAGAAGACTTTGTGGATTTAGTCTACAAGGACTGAAAGGGGGCAAACT
TCAGCCACACAGTTGGTGGGTGGTGGGTGGTGGGTGCACCAGAGAGCTCT
GAAAAATTGTTTATAGTTGAATAAACCATCTCGAATAAGGTCTAGTTAGA
TGTCTTCTCGAAAATATTGAAGTGCAAAAGTCATTGAACCTTCAATCTTT
CATCTCAGACAAAAAGAGGCCTGAAGACCAAAAGTCTCCAAATCCAATAA
GAGCAAAATTGGCCCTGGTAAAAATGGGTTAGAGCTTGCTCTAAAATGtt
tcatgtatttttgaaaagtccaAAACCTTTTGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036739-exon-sc0001507-1491911889:18415..20750 | TCONS_00036739-exon-sc0001507-1491911889:18415..20750 | Clytia hemisphaerica | exon |
| TCONS_00036739-exon-sc0001507-1510915933:18415..20750 | TCONS_00036739-exon-sc0001507-1510915933:18415..20750 | Clytia hemisphaerica | exon |
| TCONS_00036739-exon-sc0001507-1575043694:18415..20750 | TCONS_00036739-exon-sc0001507-1575043694:18415..20750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001507 | supercontig | sc0001507:18415..20750 . |
Blast
The following BLAST results are available for this feature:
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