TCONS_00036738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036738
Unique NameTCONS_00036738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036738 ID=TCONS_00036738|Name=TCONS_00036738|organism=Clytia hemisphaerica|type=transcript|length=753bp
TTGGCTGTTGCgtctcttaaaatatttttcttattccCATGTTGTAATTA
CAAAGATACGCATACCTACTTATAAAATCTGATCGTGATTTCTAATTTGA
ATAATTGGCATACTAAATTACAAAGTTAGATATACCTTAAGTACATCATA
GCCTGTTTTCATTTAGCATTTGATACCGACTGTGGATTTACTCGCAACAA
GATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAG
AATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGAT
GACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTT
GATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCT
GCTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCT
GATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTA
ATGATACACCCCTTCTCATAAACTCGGTAAACTTTTTCAGTCATTGGGGT
AAAAATGACgaactgaaactcaatggggattggattccattattttcaag
tcagaaaattcagttgggATGCAAAAATAACACTATtactttgcagtgag
gatttgtttatttgattatttttagcaTGGACAAAATTTGGAGTATAGTT
TTCCACTTGAGacaatattttgaccaatttttgtcAGGGGAGGGTGATTA
CCG
Run BLAST on NCBI

protein sequence of TCONS_00036738-protein

>TCONS_00036738-protein ID=TCONS_00036738-protein|Name=TCONS_00036738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MDVKQEVMEKVEVKDEEFPQDHLDQPSKRKNIDDTEPIKQEDGGDDNFDL
MTGTMNKRMRNGFKKLCSAIDGKDVFRSFKKSADTIYQSHKQTELNTLL
Run BLAST on NCBI

transcript from alignment at sc0001507:36500..41208+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036738 ID=TCONS_00036738|Name=TCONS_00036738|organism=Clytia hemisphaerica|type=transcript|length=4709bp|location=Sequence derived from alignment at sc0001507:36500..41208+ (Clytia hemisphaerica)
TTGGCTGTTGCgtctcttaaaatatttttcttattccCATGTTGTAATTA
CAAAGATACGCATACCTACTTATAAAATCTGATCGTGATTTCTAATTTGA
ATAATTGGCATACTAAATTACAAAGTTAGATATACCTTAAGTACATCATA
GCCTGTTTTCATTTAGCATTTGATACCGACTGTGGATTTACTCGCAACAA
GATGGTAAGATTATTTATCTACTCTTTGTTTTAACTTTTCGTACGACTTT
TTTCTCATGAAGAATATATCCAAAATAAATCCTAGATAGAATAGATCTTT
TAAAAGAAGGAAGGAGTTTTTTCTGGGGTCTAGCGACACACTTTAGTTTT
ATACGGAAgtaattttcttctttgattACGAAAAAGCCAACAGATTAACC
AACCAAATTGTAGGTGCAAATAGTTTTGGGCTTCACGCATACTCAATTAT
ATTTACCCAAAGAAGCGTATTTTGATGTAGAACGCAGCAAAAATAGACAT
TTTGCTAGtcaggatgtcatgttgaataattaaaaactacAGAATTGGAG
TTGAAGTTGGGAATAACAGCACAGTTGGAATTAATGACAGGCTGATGGAA
ACTagatttctttgcttagcgatcAGAGATTCATACGAGCGAATTAAACT
AATTAAGTGTAATTTATTTTCCTGTACAATTGAAGGATGTTAAACAAGAA
GTAATGGAAAAAGTAGAAGTTAAAGACGAAGAATTTCCCCAGGTAAGCAT
GGAAGGCATGAAAAATAAGAGTATTTTAAGAGTATTTCGTGTATTCTGAT
AGTTACCACTTCtgggatacacgtttttttataagaacattcaaattttt
tgaagccttcagataaCTTTTTGtgtaagtctaaaaatgttcttaacctg
ttcttaacattttggccagcgaagccttatgttcttgtatagtttgttct
tataaaaaaaacgtgtaccataCAATATTTTCCCTTTAAGTCTCGtgcta
tttttttccaaatgacTTAGTTTTGGAGCCAAACCCGATCTTGATCTGCT
TGAAATAAGTCCTTTAACTTCGTCCATTAGCATTTTCTTCTGTGTGTCAA
TTTTGTCTCTGGTTACTTTTCGCCCTTGAAAGAATTCTTTTACGTAGAAA
GGTATTGGTTCATCGAGGGCTTTGAAAGGCTGGTCGGTGATCGCATTTTT
AGAAATAAATCCTTAatgatggtgatgatgatgatggggAATCATCTAAC
ATGTTgaacaaaaatcaggaaatttcaaagtagtctctctaagggtggga
aaaatcacgacttttagaaaaaaattttgattttgagagaaaaaattacg
aaaaagtctcactaagggtaggaaatttttgaaaatcacggaaaattttt
cgaaaaagtctctctaagggtcactatttcactaaaatttggtctctcta
agggtcggttttcggaggtcccgtccgcacatacccctcattcaccaacc
ctagtaccccccctggCTCTAAGGTCACCCGTTAATTTAAAAAATGCGAC
ACGTTTCGATTGTCATTCCATTTCGAAGGATGTTCAACTTCaataaaagt
tatcaaaaacaCGAGCATGGCTCGAGGTATGATTTCATCGATAAAAAGTC
ACGATCTAACAAAGTAAAAGACATAAAACACGTAGAAAAAGAACACTCAC
AACTTGAATGTTTCCACATATGATCTTTACTACTATACATCTTTGATGTG
ATTTGGGAGGTTTTTTGACGCCATTCCAATCATCAATCATTTTTTACTAC
TATCTAAGActaggaaaaataaaataataggAATTTAACCACTATCAAAA
ACATCGGGCAAGCTTCAAGATAAAACCATCagcaatatttaaaaaatcaa
aattaaaaacttgaaattctaaattgatttactttttgcatttcttttta
gattttcagCGTAAAAATCATGCATTTTTAGATATCTTTCAGGTTTGGTA
GAATCAGATTTCAACTTTGGCTTCGATACTCATCTTCAcagggggggtca
acatccagataccagacccatagccgggtggtgNGGACCATTTGGACCAG
CCTTCCAAAAGAAAGAACATTGATGACACTGTACGTGACATTCTCTTTCT
AACAGCATTCGTTGCCCCATCGATGACAAAAATGCTTCAAGTTATCTAAC
TAAATTTATCGAAATCGTTGTAAAGATTGatggaaagttttttcaataat
tCGATTTCATGACTATCCAAAATACGTTATTTCAGCAAAATGTCAACCTC
ATTTTATgatctttcttattttttctctttCGATATTCCTTAGGAGCCGA
TCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTGATGGTAAGAATA
CTTTTTAGTTGAGCCGAACATTTTGTTCATTTAATTCTCATCATATATCC
CATGGCCAATGTCCCTTTTAATTGCTACTATTATATACGACATACGACCC
TTCAGTATGATCAATATGCTATCGATGTCGACAAATGTATAAAGATATCT
GTTTACTCGGGTGTTCCCAAAAGGAAGGGTAACGAAGTAGGTACTTTTTT
TATTGCCCATTATACTTATCAATGCTACCTTAACCTTTTACCTTTTACCT
TTTGGCAGTGGATTTGGTATTTGCTTGATAATTCAGTCATCGTCGGGCTG
GAATAATTATATAAAATGGGGGACCGCCTGAGAACTCCCGGTTCGTGGAA
CGTAGTGAAATCTTTCTCCCAGTCAAGTTCAGGAATTTAGCCAAGTCTCT
AGAATATTCTAAATGGTCCGTTTTGGGCTCGTTGGCAATGTTGGCAAGCC
ATGAAACGCTGAGAAAATTTCCCGGCGCTTCGAGTCAGACAATTATCTTT
ATGTGAGTTCGAATCTGGTCTTTCGCcaagttttgatatttcattCCACA
AAATGTGGTCCAAAGttctgaaaaatttggcaaaaaggTGCGGGAGTAAA
CCCAAGGAACGATTTTGACCTGTCTGTAGCCCCCCCCCTCTCTAGCGCAC
AGAATCGAGCGAATACATTTTGATTGGCGCATGCAACGCAACGTcgaaat
cttctttttttacgaTACTTTTCTAGTTTTATAGTTTTGTCGATAATCTG
GCTAATGTAGGGGGAGTAGATATTGCAAATAAGTAAGAAACAAATCTATT
TTTTGATGTCACAAAaccgaaaaaatttaaaacacagTGGTAATTTGTTA
CAGTCTGTAAAGCTTTAGGCTACCCCAATAACTAGCTCAATCAAGGTCCA
AATTGGGGTACCCTACCTTTTGGGAACActcatttttctgattttaccTT
TCAAACTTTGGTATTTTTTGTATCTTGACGACTTTGCAATATAGATAATT
TGAGTAACCGAATTTCTAGTAAGAGTGTGGACATTCCTTCGATTACCAAG
GTTTTGTAACAATTAAAAAATTCTTCTATCTCACTAGTTTTTTAACCTCG
TTGTAGGATGATCTTGCAAAGTAAAATCACCGTACGTAGAGTAAGTTAAG
GACCTCTTAGTGTGAAGAAAGGTGCTGCTGGTGAATGATAGCCTAAACAA
AGCAATGAGATTTTCAGATTCAATTAGCAACTATAGTTTAATTACACAAT
TACCAAGTGCCCTTCTAGATTGATTGGATTGAGTTTGAATTCAAGTCAAC
TTGGTTTGACTTCTCTCTCATGGAATGCAAATATTGAACTTGAAGcccct
ttcatttttattttattttagactGGAACAATGAATAAAAGGATGCGGAA
TGGATTCAAAAGTAAGCATTGCTAGTAACTCTACCTCTCATGTGTATAAA
GATttaaattgggcttttccagaaaaaaatcgtgcaccccctgttgagga
ggtccatttccgttccaagggggtaaggtttgaaatgcagtggaattcca
taagggcagacgaaaatccgtcaaaaataagcggaattccaagggggtaa
tgattgaaaatttgtaaaaattcggagttccagaggggtatgatcctaaa
attggttggaattccaagggggtaggtcacaaaaggttggacctcctcaa
cagggggtgcacggtttctttttctggaaaagcccatttataTGTTTTCT
CTGCTTTCTTCATACTTCAAGAACTTTTTTATGCTTACATTAAAGGAATC
TTAGGTGGGTGAAATTTACACACAGAGTTCGATAAATTATTTTATGCAGT
AATTAAAACAATACCTGACTAGGTTATTGTGATTTACATATTAAAAAGTC
TATTAGAATACGCACCAATGTATTAAAACTTAcatatttctatattttag
AACTCTGCTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAG
TCTGCTGATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTT
ACTTTAATGATACACCCCTTCTCATAAACTCGGTAAACTTTTTCAGTCAT
TGGGGTAAAAATGACgaactgaaactcaatggggattggattccattatt
ttcaagtcagaaaattcagttgggATGCAAAAATAACACTATtactttgc
agtgaggatttgtttatttgattatttttagcaTGGACAAAATTTGGAGT
ATAGTTTTCCACTTGAGacaatattttgaccaatttttgtcAGGGGAGGG
TGATTACCG

Coding sequence (CDS) from alignment at sc0001507:36500..41208+

>TCONS_00036738 ID=TCONS_00036738|Name=TCONS_00036738|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0001507:36500..41208+ (Clytia hemisphaerica)
ATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAGA
ATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGATG
ACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTG
ATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCTG
CTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCTG
ATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTAA
ATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAGA
ATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGATG
ACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTG
ATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCTG
CTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCTG
ATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTAA
ATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAGA
ATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGATG
ACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTG
ATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCTG
CTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCTG
ATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTAA
ATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAGA
ATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGATG
ACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTG
ATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCTG
CTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCTG
ATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTAA
ATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAGA
ATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGATG
ACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTG
ATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCTG
CTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCTG
ATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTAA
ATGGATGTTAAACAAGAAGTAATGGAAAAAGTAGAAGTTAAAGACGAAGA
ATTTCCCCAGGACCATTTGGACCAGCCTTCCAAAAGAAAGAACATTGATG
ACACTGAGCCGATCAAGCAGGAGGATGGTGGAGATGATAATTTTGATTTG
ATGactGGAACAATGAATAAAAGGATGCGGAATGGATTCAAAAAACTCTG
CTCAGCGATTGACGGTAAAGACGTTTTCCGATCGTTTAAAAAGTCTGCTG
ATACGATTTATCAATCCCACAAGCAAACAGAGCTCAATACTTTACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021700XLOC_021700Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036738-proteinTCONS_00036738-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036738-exon-sc0001507-1491911889:36500..36703TCONS_00036738-exon-sc0001507-1491911889:36500..36703Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1510915933:36500..36703TCONS_00036738-exon-sc0001507-1510915933:36500..36703Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1575043694:36500..36703TCONS_00036738-exon-sc0001507-1575043694:36500..36703Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1491911889:37185..37241TCONS_00036738-exon-sc0001507-1491911889:37185..37241Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1510915933:37185..37241TCONS_00036738-exon-sc0001507-1510915933:37185..37241Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1575043694:37185..37241TCONS_00036738-exon-sc0001507-1575043694:37185..37241Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1491911889:38585..38629TCONS_00036738-exon-sc0001507-1491911889:38585..38629Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1510915933:38585..38629TCONS_00036738-exon-sc0001507-1510915933:38585..38629Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1575043694:38585..38629TCONS_00036738-exon-sc0001507-1575043694:38585..38629Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1491911889:38843..38890TCONS_00036738-exon-sc0001507-1491911889:38843..38890Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1510915933:38843..38890TCONS_00036738-exon-sc0001507-1510915933:38843..38890Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1575043694:38843..38890TCONS_00036738-exon-sc0001507-1575043694:38843..38890Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1491911889:40271..40310TCONS_00036738-exon-sc0001507-1491911889:40271..40310Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1510915933:40271..40310TCONS_00036738-exon-sc0001507-1510915933:40271..40310Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1575043694:40271..40310TCONS_00036738-exon-sc0001507-1575043694:40271..40310Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1491911889:40850..41208TCONS_00036738-exon-sc0001507-1491911889:40850..41208Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1510915933:40850..41208TCONS_00036738-exon-sc0001507-1510915933:40850..41208Clytia hemisphaericaexon
TCONS_00036738-exon-sc0001507-1575043694:40850..41208TCONS_00036738-exon-sc0001507-1575043694:40850..41208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001507supercontigsc0001507:36500..41208 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0549566	0.0680727	0.066073	0	0	0.0450437	0	0	0	0	0	0.0725452	0.063055	0	0	0.0679821	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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