TCONS_00036731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036731
Unique NameTCONS_00036731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036731 ID=TCONS_00036731|Name=TCONS_00036731|organism=Clytia hemisphaerica|type=transcript|length=2146bp
CCATAATCAATTCTTCCTGTtttatttacatatttttttgcttatattga
TGGCAATTTCTCCCTCTTTATCTAGATATaattatttccttttttatcAA
TCAATTTTCCATAGAGCCCTCAATCGAAAATGGATGGCCACACCGATGGT
GTCTTCACATCAAATGGAGCGAAATAGAAATTCCAAATTTAATTTGGAAC
CTACCACATATCGAAAAGATTGATTTCTCCAAAAGATACGACCAGAAGAA
ATTGGAATTTTTATCACATAACATTGGTAAACTCACCGACGTTGAAGAGG
TTAAACTATATCGAAACAATTTAAAAGATCTACCAATATCGTTACTAAGt
tgccaaaaattgagaaaactaAAACTGCTCGCAaacaactttgaagagct
tccTTTATTTCTAAAAGACTTACCAAATCTTGAACTTGTTGAGAGATTCT
GTAATCCATTGACTTGGATGAATTTTGGTTCTGGATTAAGGATAAAGAAA
CATGAAGACAGGGAGCAACTGTTGGAGGATGTACCAGAGATTGTTTTAAA
CCCTGAATTGAACTTACATCAAAATCAGCAACCAGGAGACAAATATGAAC
CCAAACCTGAAATTACACAACTTCAACCAGATACTTTATTAATCACTGCA
TCAAAACGAATATGTAAAGAAATAGTACAATCAGGATTGAGTATCGATTC
TTTGAATATTTCAAGACAAACTAAAGATGTCATTTATCAATCGATGGAGA
ATTTCAACTTCTGCTACAACTGCAAGAAAGGATTACACCCAATTTATGAA
AgtAACAAGTGTTCCATATATCTTGAGCAGTTCCTTGGGTTAACTTCGAT
TCCAGTGTACTGTTATTCATGCGATTCCTGTTTGGATGAAGTTAAGGAAA
TGCTTTATAAATTAGAAAAGGATGCGGCAGATTCGGTTGAAGTGGAAACG
ACTGTTTATGTGAACAAGGAAGTATGCATAAGGAAATTACATCGAAAGAA
TTGTAGAAGGTGTGGTGGTAGAGTATCAAGAATAAATAGATTTATGAGGT
CTCTGAAGTGCAGATGATCAACAAATTGTAACATTATaatcaacctcgtt
ccctgcgtattatcagctttttgtaGTCTGATTTgcagacctatacttcc
tatagaacttctataagaaacttttttcgctagaggatgagcagaagcct
aaccttttttatgcttactgcgATAGCGCTAGGGTATGCTCTGGTGTCAA
TCAGTGACGTAAATAGAGCCTGGGATACACGATGACGAGGTTATATTAAA
TTATTTCTATTTATATtgagacgattaatttgtctgagaTGAGCAATTCA
GAAAATGAGAATTATGGAGGAGTGTACattccattcatgtttcaataaat
aggatctcctccacagatcacattttacaaactactcgtctcagacgatt
tttctGTCTCAGTATGAATAGAACTAATTAAAATGTAACAAGATTTCAAG
ATCGGAAGAAGAATTTTCAATGTGTACAGTACACACGGCTCAGGGCTGAA
GTTTCTATAAGGATTTTCCGGACTGCAGCCAAAAAGTTGCTTGtgaattt
tgagcaaaaaatatgCCTAGtgacttcaaaaactttggctTTTGATCTCA
TTTTtgtctaaaatacctcaatttggCATTTAAATAGCATTTATACNTTC
CGGACTGCAGCCAAAAAGTTGCTTGtgaattttgagcaaaaaatatgCCT
AGtgacttcaaaaactttggctTTTGATCTCATGTTTtgtctaaaatacc
tcaatttggCATTTAAATAGCATTTATAGACCTTTTAATGCCAGATAATA
CAGCTGCTTTCCTGGTTCATATCCAGTTTCAGGGCTAGGTTGCTAAGGCC
AGCTTGCTTAAGTTTCTGGATTTTCTCAGGGCTGGAAccttagcaactcg
gttgcttataaaaagttttcagttgaaatttcatatcacattcaaaattt
tattatttgcaACGACATTGTAAATACACTTTTACAGAATTTATAATTTA
ATTATCTGTATATGTATTTTCGACTAAACAGAGTTAAAAAACTCGAAAAC
TTTTGCGAGTGTGTGAACGGAGGATCTACTCAACCCTGAGAGACAG
Run BLAST on NCBI

protein sequence of TCONS_00036731-protein

>TCONS_00036731-protein ID=TCONS_00036731-protein|Name=TCONS_00036731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MNFGSGLRIKKHEDREQLLEDVPEIVLNPELNLHQNQQPGDKYEPKPEIT
QLQPDTLLITASKRICKEIVQSGLSIDSLNISRQTKDVIYQSMENFNFCY
NCKKGLHPIYESNKCSIYLEQFLGLTSIPVYCYSCDSCLDEVKEMLYKLE
KDAADSVEVETTVYVNKEVCIRKLHRKNCRRCGGRVSRINRFMRSLKCR
Run BLAST on NCBI

transcript from alignment at sc0001506:41076..45069-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036731 ID=TCONS_00036731|Name=TCONS_00036731|organism=Clytia hemisphaerica|type=transcript|length=3994bp|location=Sequence derived from alignment at sc0001506:41076..45069- (Clytia hemisphaerica)
CCATAATCAATTCTTCCTGTTTTATTTACATATTTTTTTGCTTATATTGA
TGGCAATTTCTCCCTCTTTATCTAGATATAATTATTTCCTTTTTTATCAA
TCAATTTTCCATAGAGCCCTCAATCGAAAATGGATGGCCACACCGATGGT
GTCTTCACATCAAATGGAGCGAAATAGAAATTCCAAATTTAGTATGTTTC
TCTCGCAATTTTTCTGACCTTTTTTACGACAGTGAAAGTTCTTTAGACCT
TAAAAAACAGCTGTCGTTCTTGATTCAAGAAGTATTTGTATTTTTAAACA
AGAGAAAGCCTAAGCGGTGTAAAGGCCCGGCAGTGTTGGCACCGTCAGCA
TATTTTTTCGATGCAGAGTCGCCATACAACAGGAGCGAATTTTTTCAACG
TATAGACTCGGGTCGGGCGAGCAGTAAAGAATTAATTACTTTAAACTTTT
TTCTACTAATTAAGGAAGAAAGATTTGACCATGTAAGTTGGAGGTATTAA
TTATATGTGGTTTTTTCTTACGCATGCGCACAATAGAAAGTCAGGTAGTT
CGATTTTAGCCTGGAATCGTCGATTGATAATTGCGTGCATAGGCCCAATC
CCAAGTCAAATTTTTTTCAACTAGTTGTGTTTTAAAGGCCCATTGCGCTG
CGCGCTGGGCCAACAAAGTCTTATTTTTTAATTTTTTTTCTTATTTTAAC
GATTCACCGAGGTTTATAAACAATTTTGCTCAATTTCGCGGAAAAAATAT
TTGTCTCAAGTCTTCATAGGCTTTTGTGGCCACGATCGTGTAAATTTGTA
TGCCTCTAAAGTATAAAAACTATGTAGGCACTGCATCTTTACATTGAATA
GTTTGAATCTAAAAACGTTTTGGTTCGAGAATGAGCTACAATCATGGTTG
TAATATTTGAGAAAAAGGGAAATTCACTGGGAAGTTTTGAAACCACAATT
GATTTGCAAGTGCTCTAAAGTAGCTTCGAAGGGTAGAGTTTTAAATCTGA
GTTTTAACTCTGAGTTTTAACATGAGACTTAAGGTCTGGGGATCCAAAAG
TTCAAAAATGGTCCAATAAGGCTCATAACATAACCTGGAAGTCTGTAAGC
CCGAGCCAAATTGAAATATCCGATTAAATTTAAGAGACGGCCCAAAATCG
ACTTTCTCACCCGAACTCCAAATTTCGAAAAAACGAGGAAATAAGCTTAA
TTATTAGATTTCAACCATGATTGTAGGCCAAGGTTTTATTTTAATTAAAA
NCCCGAACTCCAAATTTCGAAAAAACGAGGAAATAAGCTTAATTATTAGA
TTTCAACCATGATTGTAGGCCAAGGTTTTATTTTAATTAAAACATTCTCC
TAAATTGAAAAACGAGAAAATGATTGAAAAATTTTCAGAAATCAAAATCT
TCTATTTCACTCAGTGTAAGAAAGGTTTATCTAGCCATGGCCAGATATTT
ATATCACGCATTAACAATATAGCTTAACTGAAACTTATTTATTCGCTTGT
TCGCCAGATTTGGAACCTACCACATATCGAAAAGATTGATTTCTCCAAAA
GATACGACCAGAAGAAATTGGAATTTTTATCACATAACATTGGTAAACTC
ACCGACGTTGAAGAGGTTAAACTATATCGAAACAATTTAAAAGATCTACC
AATATCGTTACTAAGTTGCCAAAAATTGAGAAAACTAAAACTGCTCGCAA
ACAACTTTGAAGAGCTTCCTTTATTTCTAAAAGACTTACCAAATCTTGAA
CTTGTTGAGAGATTCTGTAATCCATTGACTTGGATGAATTTTGGTTCTGG
ATTAAGGATAAAGAAACATGAAGACAGGGAGCAACTGTTGGAGGATGTAC
CAGAGATTGTTTTAAACCCTGAATTGAACTTACATCAAAATCAGCAACCA
GGAGACAAATATGAACCCAAACCTGAAATTACACAACTTCAACCAGATAC
TTTATTAATCACTGCATCAAAACGAATATGTAAAGAAATAGTACAATCAG
GATTGAGTATCGATTCTTTGAATATTTCAAGACAAACTAAAGATGTCATT
TATCAATCGATGGAGAATTTCAACTTCTGCTACAACTGCAAGAAAGGATT
ACACCCAATTTATGAAAGTAAGAGAATATTTGGGGAAAATAACGAGGGTG
TTGCTTTTATCCTTCTGTCAAACTCCNCTGCAAGAAAGGATTACACCCAA
TTTATGAAAGTAAGAGAATATTTGGGGAAAATAACGAGGGTGTTGCTTTT
ATCCTTCTGTCAAACTCCGGGTGGGGCCCTCTACCCACTGGAAAACATCC
TGAAAGTCGTCTGCGATGAGATTGCAATGCGCTCATGCAACTTGGGAAAG
ACACTCAAAATCTGGAGATCCCAAAAAAGATTTTCAATACCTTTTGCATT
TGCTTCTGTTGTTTCCATCTTTGCTGGTATAACCTTCCTCACAGGGTCAC
TGAGACATGGATGTTATGATACACCAGATCAGTTGAAAATATTAAAGGAA
AGCCCCTCATTTTTAATACTTTGCAAAAAGTTTTAGAAGCTGATAGAAGT
GTAATGCTTGATGTCCCCTTGATATATTTCACAAAAATTTCTATTTATTT
CTATCTATCTATTTACATTGCTAAATGATTTTTAAATTTCTTATTTTAGG
TAACAAGTGTTCCATATATCTTGAGCAGTTCCTTGGGTTAACTTCGATTC
CAGTGTACTGTTATTCATGCGATTCCTGTTTGGATGAAGTTAAGGAAATG
CTTTATAAATTAGAAAAGGATGCGGCAGATTCGGTTGAAGTGGAAACGAC
TGTTTATGTGAACAAGGAAGTATGCATAAGGAAATTACATCGAAAGAATT
GTAGAAGGTGTGGTGGTAGAGTATCAAGAATAAATAGATTTATGAGGTCT
CTGAAGTGCAGATGATCAACAAATTGTAACATTATAATCAACCTCGTTCC
CTGCGTATTATCAGCTTTTTGTAGTCTGATTTGCAGACCTATACTTCCTA
TAGAACTTCTATAAGAAACTTTTTTCGCTAGAGGATGAGCAGAAGCCTAA
CCTTTTTTATGCTTACTGCGATAGCGCTAGGGTATGCTCTGGTGTCAATC
AGTGACGTAAATAGAGCCTGGGATACACGATGACGAGGTTATATTAAATT
ATTTCTATTTATATTGAGACGATTAATTTGTCTGAGATGAGCAATTCAGA
AAATGAGAATTATGGAGGAGTGTACATTCCATTCATGTTTCAATAAATAG
GATCTCCTCCACAGATCACATTTTACAAACTACTCGTCTCAGACGATTTT
TCTGTCTCAGTATGAATAGAACTAATTAAAATGTAACAAGATTTCAAGAT
CGGAAGAAGAATTTTCAATGTGTACAGTACACACGGCTCAGGGCTGAAGT
TTCTATAAGGATTTTCCGGACTGCAGCCAAAAAGTTGCTTGTGAATTTTG
AGCAAAAAATATGCCTAGTGACTTCAAAAACTTTGGCTTTTGATCTCATT
TTTGTCTAAAATACCTCAATTTGGCATTTAAATAGCATTTATACNTTCCG
GACTGCAGCCAAAAAGTTGCTTGTGAATTTTGAGCAAAAAATATGCCTAG
TGACTTCAAAAACTTTGGCTTTTGATCTCATGTTTTGTCTAAAATACCTC
AATTTGGCATTTAAATAGCATTTATAGACCTTTTAATGCCAGATAATACA
GCTGCTTTCCTGGTTCATATCCAGTTTCAGGGCTAGGTTGCTAAGGCCAG
CTTGCTTAAGTTTCTGGATTTTCTCAGGGCTGGAACCTTAGCAACTCGGT
TGCTTATAAAAAGTTTTCAGTTGAAATTTCATATCACATTCAAAATTTTA
TTATTTGCAACGACATTGTAAATACACTTTTACAGAATTTATAATTTAAT
TATCTGTATATGTATTTTCGACTAAACAGAGTTAAAAAACTCGAAAACTT
TTGCGAGTGTGTGAACGGAGGATCTACTCAACCCTGAGAGACAG

Coding sequence (CDS) from alignment at sc0001506:41076..45069-

>TCONS_00036731 ID=TCONS_00036731|Name=TCONS_00036731|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0001506:41076..45069- (Clytia hemisphaerica)
GTAACAAGTGTTCCATATATCTTGAGCAGTTCCTTGGGTTAACTTCGATT
CCAGTGTACTGTTATTCATGCGATTCCTGTTTGGATGAAGTTAAGGAAAT
GCTTTATAAATTAGAAAAGGATGCGGCAGATTCGGTTGAAGTGGAAACGA
CTGTTTATGTGAACAAGGAAGTATGCATAAGGAAATTACATCGAAAGAAT
TGTAGAAGGTGTGGTGGTAGAGTATCAAGAATAAATAGATTTATGAGGTC
TCTGAAGTGCAGATGAATGAATTTTGGTTCTGGATTAAGGATAAAGAAAC
ATGAAGACAGGGAGCAACTGTTGGAGGATGTACCAGAGATTGTTTTAAAC
CCTGAATTGAACTTACATCAAAATCAGCAACCAGGAGACAAATATGAACC
CAAACCTGAAATTACACAACTTCAACCAGATACTTTATTAATCACTGCAT
CAAAACGAATATGTAAAGAAATAGTACAATCAGGATTGAGTATCGATTCT
TTGAATATTTCAAGACAAACTAAAGATGTCATTTATCAATCGATGGAGAA
TTTCAACTTCTGCTACAACTGCAAGAAAGGATTACACCCAATTTATGAAA
GTAACAAGTGTTCCATATATCTTGAGCAGTTCCTTGGGTTAACTTCGATT
CCAGTGTACTGTTATTCATGCGATTCCTGTTTGGATGAAGTTAAGGAAAT
GCTTTATAAATTAGAAAAGGATGCGGCAGATTCGGTTGAAGTGGAAACGA
CTGTTTATGTGAACAAGGAAGTATGCATAAGGAAATTACATCGAAAGAAT
TGTAGAAGGTGTGGTGGTAGAGTATCAAGAATAAATAGATTTATGAGGTC
TCTGAAGTGCAGATGAATGAATTTTGGTTCTGGATTAAGGATAAAGAAAC
ATGAAGACAGGGAGCAACTGTTGGAGGATGTACCAGAGATTGTTTTAAAC
CCTGAATTGAACTTACATCAAAATCAGCAACCAGGAGACAAATATGAACC
CAAACCTGAAATTACACAACTTCAACCAGATACTTTATTAATCACTGCAT
CAAAACGAATATGTAAAGAAATAGTACAATCAGGATTGAGTATCGATTCT
TTGAATATTTCAAGACAAACTAAAGATGTCATTTATCAATCGATGGAGAA
TTTCAACTTCTGCTACAACTGCAAGAAAGGATTACACCCAATTTATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021693XLOC_021693Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036731-proteinTCONS_00036731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036731-exon-sc0001506-1575043694:44879..45069TCONS_00036731-exon-sc0001506-1575043694:44879..45069Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1575043694:42953..43562TCONS_00036731-exon-sc0001506-1575043694:42953..43562Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1575043694:41076..42420TCONS_00036731-exon-sc0001506-1575043694:41076..42420Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1510915933:44879..45069TCONS_00036731-exon-sc0001506-1510915933:44879..45069Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1510915933:42953..43562TCONS_00036731-exon-sc0001506-1510915933:42953..43562Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1510915933:41076..42420TCONS_00036731-exon-sc0001506-1510915933:41076..42420Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1491911889:44879..45069TCONS_00036731-exon-sc0001506-1491911889:44879..45069Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1491911889:42953..43562TCONS_00036731-exon-sc0001506-1491911889:42953..43562Clytia hemisphaericaexon
TCONS_00036731-exon-sc0001506-1491911889:41076..42420TCONS_00036731-exon-sc0001506-1491911889:41076..42420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001506supercontigsc0001506:41076..45069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371026	0.421358	0.106187	0.0503844	0.401208	0.145411	1.47178	2.1205	2.73365	6.07209	18.4169	1.11727	1.33018	0.76356	1.4257	1.43628	0.62449	0.475433	2.27575	3.10367	1.05941	1.19608	1.41307	7.56259	2.46789	4.72847	2.64746	2.49737	15.5192	8.68571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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