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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036730 ID=TCONS_00036730|Name=TCONS_00036730|organism=Clytia hemisphaerica|type=transcript|length=1366bp
GATTACACCCAATTTATGAAAgtAACAAGTGTTCCATATATCTTGAGCAG
TTCCTTGGGTTAACTTCGATTCCAGTGTACTGTTATTCATGCGATTCCTG
TTTGGATGAAGTTAAGGAAATGCTTTATAAATTAGAAAAGGATGCGGCAG
ATTCGGTTGAAGTGGAAACGACTGTTTATGTGAACAAGGAAGTATGCATA
AGGAAATTACATCGAAAGAATTGTAGAAGGTGTGGTGGTAGAGTATCAAG
AATAAATAGATTTATGAGGTCTCTGAAGTGCAGATGATCAACAAATTGTA
ACATTATaatcaacctcgttccctgcgtattatcagctttttgtaGTCTG
ATTTgcagacctatacttcctatagaacttctataagaaacttttttcgc
tagaggatgagcagaagcctaaccttttttatgcttactgcgATAGCGCT
AGGGTATGCTCTGGTGTCAATCAGTGACGTAAATAGAGCCTGGGATACAC
GATGACGAGGTTATATTAAATTATTTCTATTTATATtgagacgattaatt
tgtctgagaTGAGCAATTCAGAAAATGAGAATTATGGAGGAGTGTACatt
ccattcatgtttcaataaataggatctcctccacagatcacattttacaa
actactcgtctcagacgatttttctGTCTCAGTATGAATAGAACTAATTA
AAATGTAACAAGATTTCAAGATCGGAAGAAGAATTTTCAATGTGTACAGT
ACACACGGCTCAGGGCTGAAGTTTCTATAAGGATTTTCCGGACTGCAGCC
AAAAAGTTGCTTGtgaattttgagcaaaaaatatgCCTAGtgacttcaaa
aactttggctTTTGATCTCATTTTtgtctaaaatacctcaatttggCATT
TAAATAGCATTTATACNTTCCGGACTGCAGCCAAAAAGTTGCTTGtgaat
tttgagcaaaaaatatgCCTAGtgacttcaaaaactttggctTTTGATCT
CATGTTTtgtctaaaatacctcaatttggCATTTAAATAGCATTTATAGA
CCTTTTAATGCCAGATAATACAGCTGCTTTCCTGGTTCATATCCAGTTTC
AGGGCTAGGTTGCTAAGGCCAGCTTGCTTAAGTTTCTGGATTTTCTCAGG
GCTGGAAccttagcaactcggttgcttataaaaagttttcagttgaaatt
tcatatcacattcaaaattttattatttgcaACGACATTGTAAATACACT
TTTACAGAATTTATAATTTAATTATCTGTATATGTATTTTCGACTAAACA
GAGTTAAAAAACTCGAAAACTTTTGCGAGTGTGTGAACGGAGGATCTACT
CAACCCTGAGAGACAG Run BLAST on NCBI transcript from alignment at sc0001506:41076..42881- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036730 ID=TCONS_00036730|Name=TCONS_00036730|organism=Clytia hemisphaerica|type=transcript|length=1806bp|location=Sequence derived from alignment at sc0001506:41076..42881- (Clytia hemisphaerica)
GATTACACCCAATTTATGAAAGTAAGAGAATATTTGGGGAAAATAACGAG
GGTGTTGCTTTTATCCTTCTGTCAAACTCCGGGTGGGGCCCTCTACCCAC
TGGAAAACATCCTGAAAGTCGTCTGCGATGAGATTGCAATGCGCTCATGC
AACTTGGGAAAGACACTCAAAATCTGGAGATCCCAAAAAAGATTTTCAAT
ACCTTTTGCATTTGCTTCTGTTGTTTCCATCTTTGCTGGTATAACCTTCC
TCACAGGGTCACTGAGACATGGATGTTATGATACACCAGATCAGTTGAAA
ATATTAAAGGAAAGCCCCTCATTTTTAATACTTTGCAAAAAGTTTTAGAA
GCTGATAGAAGTGTAATGCTTGATGTCCCCTTGATATATTTCACAAAAAT
TTCTATTTATTTCTATCTATCTATTTACATTGCTAAATGATTTTTAAATT
TCTTATTTTAGGTAACAAGTGTTCCATATATCTTGAGCAGTTCCTTGGGT
TAACTTCGATTCCAGTGTACTGTTATTCATGCGATTCCTGTTTGGATGAA
GTTAAGGAAATGCTTTATAAATTAGAAAAGGATGCGGCAGATTCGGTTGA
AGTGGAAACGACTGTTTATGTGAACAAGGAAGTATGCATAAGGAAATTAC
ATCGAAAGAATTGTAGAAGGTGTGGTGGTAGAGTATCAAGAATAAATAGA
TTTATGAGGTCTCTGAAGTGCAGATGATCAACAAATTGTAACATTATAAT
CAACCTCGTTCCCTGCGTATTATCAGCTTTTTGTAGTCTGATTTGCAGAC
CTATACTTCCTATAGAACTTCTATAAGAAACTTTTTTCGCTAGAGGATGA
GCAGAAGCCTAACCTTTTTTATGCTTACTGCGATAGCGCTAGGGTATGCT
CTGGTGTCAATCAGTGACGTAAATAGAGCCTGGGATACACGATGACGAGG
TTATATTAAATTATTTCTATTTATATTGAGACGATTAATTTGTCTGAGAT
GAGCAATTCAGAAAATGAGAATTATGGAGGAGTGTACATTCCATTCATGT
TTCAATAAATAGGATCTCCTCCACAGATCACATTTTACAAACTACTCGTC
TCAGACGATTTTTCTGTCTCAGTATGAATAGAACTAATTAAAATGTAACA
AGATTTCAAGATCGGAAGAAGAATTTTCAATGTGTACAGTACACACGGCT
CAGGGCTGAAGTTTCTATAAGGATTTTCCGGACTGCAGCCAAAAAGTTGC
TTGTGAATTTTGAGCAAAAAATATGCCTAGTGACTTCAAAAACTTTGGCT
TTTGATCTCATTTTTGTCTAAAATACCTCAATTTGGCATTTAAATAGCAT
TTATACNTTCCGGACTGCAGCCAAAAAGTTGCTTGTGAATTTTGAGCAAA
AAATATGCCTAGTGACTTCAAAAACTTTGGCTTTTGATCTCATGTTTTGT
CTAAAATACCTCAATTTGGCATTTAAATAGCATTTATAGACCTTTTAATG
CCAGATAATACAGCTGCTTTCCTGGTTCATATCCAGTTTCAGGGCTAGGT
TGCTAAGGCCAGCTTGCTTAAGTTTCTGGATTTTCTCAGGGCTGGAACCT
TAGCAACTCGGTTGCTTATAAAAAGTTTTCAGTTGAAATTTCATATCACA
TTCAAAATTTTATTATTTGCAACGACATTGTAAATACACTTTTACAGAAT
TTATAATTTAATTATCTGTATATGTATTTTCGACTAAACAGAGTTAAAAA
ACTCGAAAACTTTTGCGAGTGTGTGAACGGAGGATCTACTCAACCCTGAG
AGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036730-exon-sc0001506-1575043694:42861..42881 | TCONS_00036730-exon-sc0001506-1575043694:42861..42881 | Clytia hemisphaerica | exon |
| TCONS_00036730-exon-sc0001506-1575043694:41076..42420 | TCONS_00036730-exon-sc0001506-1575043694:41076..42420 | Clytia hemisphaerica | exon |
| TCONS_00036730-exon-sc0001506-1510915933:42861..42881 | TCONS_00036730-exon-sc0001506-1510915933:42861..42881 | Clytia hemisphaerica | exon |
| TCONS_00036730-exon-sc0001506-1510915933:41076..42420 | TCONS_00036730-exon-sc0001506-1510915933:41076..42420 | Clytia hemisphaerica | exon |
| TCONS_00036730-exon-sc0001506-1491911889:42861..42881 | TCONS_00036730-exon-sc0001506-1491911889:42861..42881 | Clytia hemisphaerica | exon |
| TCONS_00036730-exon-sc0001506-1491911889:41076..42420 | TCONS_00036730-exon-sc0001506-1491911889:41076..42420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001506 | supercontig | sc0001506:41076..42881 - |
Blast
The following BLAST results are available for this feature:
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