TCONS_00036723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036723
Unique NameTCONS_00036723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036723 ID=TCONS_00036723|Name=TCONS_00036723|organism=Clytia hemisphaerica|type=transcript|length=428bp
AGGGATTCCCACTATGGCCCTTTATACCTATCCTCCCTTTTTGCAAAATG
TAGCTACCCCCAAGAAAACTGCCCTTTTTCAGAACCTTTGCCAAGATATG
TCTTGCCCATAACAGTCCATGTTATCCCCTAGTTCAAataatttcatcaa
tttttgaaaggtTTACTTATAAAAAGTCAAAGATGTTTACCTTACTGGCC
CTTTTTACACTGGCTCTTATTGGTGTTATCTTTTCGCCGCTGACGTAATA
AGGGTCGACGTAAGGGGTCTGAATTAACAGCCGggataaaattgaaaaac
attcaGCTTTGGCCAGCGTAAAGGGggtcggcgtaaaaagggctgataag
gTATAAAGATTACAAGGGCTGTTGCACTTTGTTATAAAGTTTTCTAAGAA
TCTATACACCTCTTTGAAAATCTACCCC
Run BLAST on NCBI

transcript from alignment at sc0001504:52859..53286

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036723 ID=TCONS_00036723|Name=TCONS_00036723|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0001504:52859..53286 (Clytia hemisphaerica)
GGGGTAGATTTTCAAAGAGGTGTATAGATTCTTAGAAAACTTTATAACAA
AGTGCAACAGCCCTTGTAATCTTTATAccttatcagccctttttacgccg
accCCCTTTACGCTGGCCAAAGCtgaatgtttttcaattttatccCGGCT
GTTAATTCAGACCCCTTACGTCGACCCTTATTACGTCAGCGGCGAAAAGA
TAACACCAATAAGAGCCAGTGTAAAAAGGGCCAGTAAGGTAAACATCTTT
GACTTTTTATAAGTAAacctttcaaaaattgatgaaattatTTGAACTAG
GGGATAACATGGACTGTTATGGGCAAGACATATCTTGGCAAAGGTTCTGA
AAAAGGGCAGTTTTCTTGGGGGTAGCTACATTTTGCAAAAAGGGAGGATA
GGTATAAAGGGCCATAGTGGGAATCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021690XLOC_021690Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036723-exon-sc0001504-1491911889:52859..53286TCONS_00036723-exon-sc0001504-1491911889:52859..53286Clytia hemisphaericaexon
TCONS_00036723-exon-sc0001504-1510915933:52859..53286TCONS_00036723-exon-sc0001504-1510915933:52859..53286Clytia hemisphaericaexon
TCONS_00036723-exon-sc0001504-1575043694:52859..53286TCONS_00036723-exon-sc0001504-1575043694:52859..53286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001504supercontigsc0001504:52859..53286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161999	0.315949	0.366847	0.179451	0.436929	0.517901	0	0.194985	0.136513	0.338188	0.49238	0.10789	0.10774	0.111889	0.183977	0.39487	0.364836	0	0.344417	0.180204	0	0.229195	0.185745	0.168869	0.173931	0.155229	0.222133	0	0.179806	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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