TCONS_00036718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036718
Unique NameTCONS_00036718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036718 ID=TCONS_00036718|Name=TCONS_00036718|organism=Clytia hemisphaerica|type=transcript|length=328bp
GCAAGGGTTTAATGTTAAGTATGTTTGGTAccgaaaaaatgttgaaaaga
tCAAAGAAAGTTTAACCTTATTTGGAAAGAACAATTCAGCTGTTAGAAAT
AGTTTGATTGATGGGTTTTCTAATGGAGTCTGGTCAGCATTGTGTCAAAA
ACAAAAAGCTAGGCACAGTCTTTTTCATTGCAATGggtgtttgaaaattg
aaaagaatcGTGCACTGTTGGCTAAGTTTCCTATAAAAGAAAACGATTAC
ACAGCAAAGAAGAGAGCAAAAGAAGGTGGCTCGTACAAACCAAATACCAG
TGAAATGAGAAAGATTACTACAGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00036718-protein

>TCONS_00036718-protein ID=TCONS_00036718-protein|Name=TCONS_00036718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
QGFNVKYVWYRKNVEKIKESLTLFGKNNSAVRNSLIDGFSNGVWSALCQK
QKARHSLFHCNGCLKIEKNRALLAKFPIKENDYTAKKRAKEGGSYKPNTS
EMRKITTEK
Run BLAST on NCBI

transcript from alignment at sc0001502:44546..44873

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036718 ID=TCONS_00036718|Name=TCONS_00036718|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at sc0001502:44546..44873 (Clytia hemisphaerica)
CTTTTCTGTAGTAATCTTTCTCATTTCACTGGTATTTGGTTTGTACGAGC
CACCTTCTTTTGCTCTCTTCTTTGCTGTGTAATCGTTTTCTTTTATAGGA
AACTTAGCCAACAGTGCACgattcttttcaattttcaaacaccCATTGCA
ATGAAAAAGACTGTGCCTAGCTTTTTGTTTTTGACACAATGCTGACCAGA
CTCCATTAGAAAACCCATCAATCAAACTATTTCTAACAGCTGAATTGTTC
TTTCCAAATAAGGTTAAACTTTCTTTGatcttttcaacattttttcggTA
CCAAACATACTTAACATTAAACCCTTGC

Coding sequence (CDS) from alignment at sc0001502:44546..44873

>TCONS_00036718 ID=TCONS_00036718|Name=TCONS_00036718|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0001502:44546..44873 (Clytia hemisphaerica)
CTTTTCTGTAGTAATCTTTCTCATTTCACTGGTATTTGGTTTGTACGAGC
CACCTTCTTTTGCTCTCTTCTTTGCTGTGTAATCGTTTTCTTTTATAGGA
AACTTAGCCAACAGTGCACgattcttttcaattttcaaacaccCATTGCA
ATGAAAAAGACTGTGCCTAGCTTTTTGTTTTTGACACAATGCTGACCAGA
CTCCATTAGAAAACCCATCAATCAAACTATTTCTAACAGCTGAATTGTTC
TTTCCAAATAAGGTTAAACTTTCTTTGatcttttcaacattttttcggTA
CCAAACATACTTAACATTAAACCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021685XLOC_021685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036718-exon-sc0001502-1491911889:44546..44873TCONS_00036718-exon-sc0001502-1491911889:44546..44873Clytia hemisphaericaexon
TCONS_00036718-exon-sc0001502-1510915933:44546..44873TCONS_00036718-exon-sc0001502-1510915933:44546..44873Clytia hemisphaericaexon
TCONS_00036718-exon-sc0001502-1575043694:44546..44873TCONS_00036718-exon-sc0001502-1575043694:44546..44873Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036718-proteinTCONS_00036718-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001502supercontigsc0001502:44546..44873 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78872	1.74428	0.675094	0.330237	1.60813	0.953072	1.53312	1.07647	0.75366	0.311177	2.11425	0	0.396541	0.411811	0.507847	2.36166	0.223798	0.229385	0	0	1.15296	0.843558	0.683637	0	2.24055	1.42831	1.22635	0.872526	0	1.01137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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