TCONS_00036712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036712
Unique NameTCONS_00036712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036712 ID=TCONS_00036712|Name=TCONS_00036712|organism=Clytia hemisphaerica|type=transcript|length=1343bp
tagaaaattaacttaaaattaaaatagCACAAACAACCGAAACACAGCAC
TACATAAAAATAACACATAATGACTCTTGGACGGACTGTTAAAGATGAAC
TCGCAGACATCATGAGTTCCATCAACGATCACGTTGAGTTAGCAGACTAT
ATCATCAAATCACCGCCCAAAGAGAAACAACACAACGCCCTGGTGAGGTG
GTGCATGAGATGGTTTGTTTTGTATTACAACAGGGCGCAAAATAAATGTT
GGTTACTGTACTTTCAAAATGAAGAAGCGTTTCTAAGTGGAAAACTACCA
AAAGGTAAAATCGATTTAAAGTTATCGAAGATCAAGGAACACAAGACACC
TATGAACAAATATGAATACGTGATTGTTGTCATAGCTGTCAAACGTACCT
TTCACCTCTGTTTTTTGAATcggaaaatttatcaaaaatggcTAACGACA
TTGAAAGAATTTCATTCAGAAGTAtggTCATCACAAGTTCAACAAAAAGt
tacaaacaacaacaacaacaacaattcaCCATTCCTCTTAAACAATCGAA
AAATGCCTTCAAGACCAACTACCATACCAAAAGATATAAATGAACTTTTA
CTTGAAGCCGATACCAAGCATGAGAAAAGATATGCAAGTTTACAAGAAGT
TTCCACCACAAAACGAACATCTATATCACCATTGAATATCCACCTGGAAA
TGCTTGAACGCCTGGAGAAAGCAGCTGCTAAGAGACCACTTTCTGATGGG
TCAGATTATGACATGGGAGGTTTTACAGGACCAAGGTTCAATTACTCGCA
TCAGTGATTGAAGATTAAAAACAGTATAGTTGTTGATGGAAAGTCACTCC
CATTGAGTGAAAGGAAATTGACCATGAAAAGCGGATTAGCAAAGTGAGCC
ACTTGATAATCGGCTTACGTCATAATTTTccagattttgaaatttatacG
ACTATACGCCTTCCAATGTGTGTATATTTAAATTCTAGGAAATACCCACG
TAGTTTAAGGTTTCTGTTATGTTTAGTTCATTGTAGAATATCGTGGCATT
ATCCCTTTATCTCCTCTTTATCACAGACCCGAAGGCTCTGTTGCCAAATT
AAAaccgcaaatttgttcgagctTTGAGAGGCTCGATGATATTGGTTTAA
AAGAGTTCTCAAATAGAACCATggaataatttttgataattttttaattt
tagggtAGAATTCTAAACTTGATTAGATTAGACAACACGGATTAGTATTT
ATAATGTGTTTTAATATCACATGTATTTTAACTGATGACAAACTTTATTT
CTATATTTGAGTTCTTTTCATATTATTTTATCTTATACAGATT
Run BLAST on NCBI

protein sequence of TCONS_00036712-protein

>TCONS_00036712-protein ID=TCONS_00036712-protein|Name=TCONS_00036712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MTLGRTVKDELADIMSSINDHVELADYIIKSPPKEKQHNALVRWCMRWFV
LYYNRAQNKCWLLYFQNEEAFLSGKLPKGKIDLKLSKIKEHKTPMNKYEY
VIVVIAVKRTFHLCFLNRKIYQKWLTTLKEFHSEVWSSQVQQKVTNNNNN
NNSPFLLNNRKMPSRPTTIPKDINELLLEADTKHEKRYASLQEVSTTKRT
SISPLNIHLEMLERLEKAAAKRPLSDGSDYDMGGFTGPRFNYSHQ
Run BLAST on NCBI

transcript from alignment at sc0001501:29317..32521-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036712 ID=TCONS_00036712|Name=TCONS_00036712|organism=Clytia hemisphaerica|type=transcript|length=3205bp|location=Sequence derived from alignment at sc0001501:29317..32521- (Clytia hemisphaerica)
TAGAAAATTAACTTAAAATTAAAATAGCACAAACAACCGAAACACAGCAC
TACATAAAAATAACACATAATGACTCTTGGACGGACTGTTAAAGATGAAC
TCGCAGACATCATGAGTTCCATCAACGATCACGTTGAGTTAGCAGACTAT
ATCATCAAATCACCGCCCAAAGAGAAACAACACAACGCCCTGGTGAGGTG
GTGCATGAGATGGTTTGTTTTGTATTACAACAGGGCGCAAAATAAATGTT
GGTTACTGTACTTTCAAAATGAAGAAGCGTTTCTAAGTGGAAAACTACCA
AAAGGTAAATCTCTATTTAAATATATTCTACACGTTTTTTTTATGAGAGC
ATACAAAATTTTTTAAGCTTTCTTGGGTTTTAAGCCTAAAAATATTCTTA
GCATGTTCTTATTTTCACCATTTTGTGACCATTTTTACCTATTTTCCTAA
GAAATCGGGTGTTTTTGAATATCCGCCAAGCTTTAAAATTTTGGCCATCG
AAGCAATAATGATCTTGCTATTATAGGTAAAATCGATTTAAAGTTATCGA
AGATCAAGGAACACAAGACACCTATGAACAAATATGAATACGTGATTGTT
GTCATAGCTGTCAAACGTACCTTTCACCTCTGTTTTTTGAATCGGAAAAT
TTATCAAAAATGGCTAACGACATTGAAAGAATTTCATTCAGAAGTAGTAA
GTGTTTTTTTATTTCTTTGTCTAACGTTTCAACCCTCTAAATCCTAACCC
CCACACGAGATTAAGCATTTTTGAGAGGTATTTCCAATGTAGTTTACACC
AATATAGTTCTCTTTTCTTTTCTGGAATTAGATGATATATGACTCTTTTA
ACTACAACATCTGCCAAAACATTATTCTAGATCCCGGGTTACTGTATGTA
GAATCAAATTTAGAAACGAAGAAAGTGGATTAAATTCATCCAGATTCATC
CAATAAATTGCGATTTGCAAATCCTCATTCTCTGAAACAGTGCTGAAAGG
CCGCGTTGCCTGAAGTTAATAGCATCTGCTATAATTACTTAATTGGTACC
AAGAAAAAAATCAACTAATTGTAATGCCACGATGTCGGTCTAGAGCCTGC
CAAAAATAGACAATTCTTAACCTTGCTGAATAAGTGTTTGACCTATTGTT
TAATTTGATTTTAATGAAGAAAGATGGTCACAATCCGATACAGTACATAC
CAGTGGATACCCCTTAAAACCACATACCCCTTAAAACCCACAATGTTGCA
TTTTTGGCTTTCATAACTACCAGATTTAATTTTATGTGGTATGTTTCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATAGACAACGTA
CTTTCAACACAAAAAGTTTCAGCCTTACACTCCAACTAAACAATGAGATA
GAGGGTACCACTTTTTATTGTGGGTTTTAAGGGGTATCCGCTGGTACATG
ACATTATCAAATTTTCTTCACTTTCATCTTGCGATTTCCATAAGTAGATG
TGAGGTCTTTGTAACAGACAATATTTTTTCTTTCAGTGGTCATCACAAGT
TCAACAAAAAGTTACAAACAACAACAACAACAACAATTCACCATTCCTCT
TAAACAATCGAAAAATGCCTTCAAGACCAACTACCATACCAAAAGATATA
AATGAACTTTTACTTGAAGCCGATACCAAGCATGAGAAAAGATATGCAAG
TTTACAAGAAGTTTCCACCACAAAACGAACATCTATATCACCATTGAATA
TCCACCTGGAAATGCTTGAACGCCTGGAGAAAGCAGCTGCTAAGAGACCA
CTTTCTGATGGGTCAGATTATGACATGGGAGGTTTTACAGGACCAAGGTT
CAATTACTCGCATCAGTGATTGAAGATTAAAAACAGTATAGTTGTTGATG
GAAAGTCACTCCCATTGAGTGAAAGGAAATTGACCATGAAAAGCGGATTA
GCAAAGTGAGCCACTTGATAATCGGCTTACGTCATAATTTTCCAGATTTT
GAAATTTATACGACTATACGCCTTCCAATGTGTGTATATTTAAATTCTAG
GAAATACCCACGTAGTTTAAGGTTTCTGTTATGTTTAGTTCATTGTAGAA
TATCGTGGCATTATCCCTTTATCTCCTCTTTATCACAGACCCGAAGGCTC
TGTTGCCAAATTAAAACCGCAAATTTGTTCGAGCTTTGAGAGGCTCGATG
ATATTGGTTTAAAAGAGTTCTCAAATAGAACCATGGAATAATTTTTGATA
ATTTTTTAATTTTAGGGTAGAATTCTAAACTTGATTAGATTAGACAACAC
GGATTAGTATTTATAATGTGTTTTAATATCACATGTATTTTAACTGATGA
CAAACTTTATTTCTATATTTGAGTTCTTTTCATATTATTTTATCTTATAC
AGATT

Coding sequence (CDS) from alignment at sc0001501:29317..32521-

>TCONS_00036712 ID=TCONS_00036712|Name=TCONS_00036712|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0001501:29317..32521- (Clytia hemisphaerica)
TGGTCATCACAAGTTCAACAAAAAGTTACAAACAACAACAACAACAACAA
TTCACCATTCCTCTTAAACAATCGAAAAATGCCTTCAAGACCAACTACCA
TACCAAAAGATATAAATGAACTTTTACTTGAAGCCGATACCAAGCATGAG
AAAAGATATGCAAGTTTACAAGAAGTTTCCACCACAAAACGAACATCTAT
ATCACCATTGAATATCCACCTGGAAATGCTTGAACGCCTGGAGAAAGCAG
CTGCTAAGAGACCACTTTCTGATGGGTCAGATTATGACATGGGAGGTTTT
ACAGGACCAAGGTTCAATTACTCGCATCAGTGAGTAAAATCGATTTAAAG
TTATCGAAGATCAAGGAACACAAGACACCTATGAACAAATATGAATACGT
GATTGTTGTCATAGCTGTCAAACGTACCTTTCACCTCTGTTTTTTGAATC
GGAAAATTTATCAAAAATGGCTAACGACATTGAAAGAATTTCATTCAGAA
GTAATGACTCTTGGACGGACTGTTAAAGATGAACTCGCAGACATCATGAG
TTCCATCAACGATCACGTTGAGTTAGCAGACTATATCATCAAATCACCGC
CCAAAGAGAAACAACACAACGCCCTGGTGAGGTGGTGCATGAGATGGTTT
GTTTTGTATTACAACAGGGCGCAAAATAAATGTTGGTTACTGTACTTTCA
AAATGAAGAAGCGTTTCTAAGTGGAAAACTACCAAAAGTGGTCATCACAA
GTTCAACAAAAAGTTACAAACAACAACAACAACAACAATTCACCATTCCT
CTTAAACAATCGAAAAATGCCTTCAAGACCAACTACCATACCAAAAGATA
TAAATGAACTTTTACTTGAAGCCGATACCAAGCATGAGAAAAGATATGCA
AGTTTACAAGAAGTTTCCACCACAAAACGAACATCTATATCACCATTGAA
TATCCACCTGGAAATGCTTGAACGCCTGGAGAAAGCAGCTGCTAAGAGAC
CACTTTCTGATGGGTCAGATTATGACATGGGAGGTTTTACAGGACCAAGG
TTCAATTACTCGCATCAGTGAGTAAAATCGATTTAAAGTTATCGAAGATC
AAGGAACACAAGACACCTATGAACAAATATGAATACGTGATTGTTGTCAT
AGCTGTCAAACGTACCTTTCACCTCTGTTTTTTGAATCGGAAAATTTATC
AAAAATGGCTAACGACATTGAAAGAATTTCATTCAGAAGTAATGACTCTT
GGACGGACTGTTAAAGATGAACTCGCAGACATCATGAGTTCCATCAACGA
TCACGTTGAGTTAGCAGACTATATCATCAAATCACCGCCCAAAGAGAAAC
AACACAACGCCCTGGTGAGGTGGTGCATGAGATGGTTTGTTTTGTATTAC
AACAGGGCGCAAAATAAATGTTGGTTACTGTACTTTCAAAATGAAGAAGC
GTTTCTAAGTGGAAAACTACCAAAAGTGGTCATCACAAGTTCAACAAAAA
GTTACAAACAACAACAACAACAACAATTCACCATTCCTCTTAAACAATCG
AAAAATGCCTTCAAGACCAACTACCATACCAAAAGATATAAATGAACTTT
TACTTGAAGCCGATACCAAGCATGAGAAAAGATATGCAAGTTTACAAGAA
GTTTCCACCACAAAACGAACATCTATATCACCATTGAATATCCACCTGGA
AATGCTTGAACGCCTGGAGAAAGCAGCTGCTAAGAGACCACTTTCTGATG
GGTCAGATTATGACATGGGAGGTTTTACAGGACCAAGGTTCAATTACTCG
CATCAGTGAGTAAAATCGATTTAAAGTTATCGAAGATCAAGGAACACAAG
ACACCTATGAACAAATATGAATACGTGATTGTTGTCATAGCTGTCAAACG
TACCTTTCACCTCTGTTTTTTGAATCGGAAAATTTATCAAAAATGGCTAA
CGACATTGAAAGAATTTCATTCAGAAGTAATGACTCTTGGACGGACTGTT
AAAGATGAACTCGCAGACATCATGAGTTCCATCAACGATCACGTTGAGTT
AGCAGACTATATCATCAAATCACCGCCCAAAGAGAAACAACACAACGCCC
TGGTGAGGTGGTGCATGAGATGGTTTGTTTTGTATTACAACAGGGCGCAA
AATAAATGTTGGTTACTGTACTTTCAAAATGAAGAAGCGTTTCTAAGTGG
AAAACTACCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021679XLOC_021679Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036712-proteinTCONS_00036712-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036712-exon-sc0001501-1575043694:32218..32521TCONS_00036712-exon-sc0001501-1575043694:32218..32521Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1575043694:31826..31995TCONS_00036712-exon-sc0001501-1575043694:31826..31995Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1575043694:29317..30185TCONS_00036712-exon-sc0001501-1575043694:29317..30185Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1510915933:32218..32521TCONS_00036712-exon-sc0001501-1510915933:32218..32521Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1510915933:31826..31995TCONS_00036712-exon-sc0001501-1510915933:31826..31995Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1510915933:29317..30185TCONS_00036712-exon-sc0001501-1510915933:29317..30185Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1491911889:32218..32521TCONS_00036712-exon-sc0001501-1491911889:32218..32521Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1491911889:31826..31995TCONS_00036712-exon-sc0001501-1491911889:31826..31995Clytia hemisphaericaexon
TCONS_00036712-exon-sc0001501-1491911889:29317..30185TCONS_00036712-exon-sc0001501-1491911889:29317..30185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001501supercontigsc0001501:29317..32521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55098	2.85094	1.60962	0.886751	1.33641	1.56663	4.42773	3.65758	3.42843	3.22344	3.34436	5.48549	8.46977	6.73013	2.66382	4.39471	5.95467	7.66922	7.41625	7.69816	4.921	5.23608	7.63561	8.42867	18.272	30.8249	8.10008	3.65771	3.03182	4.51025
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
IPR011993PH_dom-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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