TCONS_00036701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036701
Unique NameTCONS_00036701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036701 ID=TCONS_00036701|Name=TCONS_00036701|organism=Clytia hemisphaerica|type=transcript|length=493bp
GGATGCTATTGGGACCAGAAGCTTTGTTCTCACTCAAGGACATTAAAACT
TTAGAGAGTTCGAGTTTGGAGACTGGCGAGATGAGAAAGTTATTAGGATT
TCGACGTTCATTTGATAGCCATTCAGAAAAGTGATGACGTGTGAAAGGGT
TTTTTGATCGTATCTTACCAGCAATCGTTGAGAAGAAATCATTGAAGCCC
TCTGAGACTTCTTGAGGACATGAAGAAAGAGAGTCATTGATGTTGAGAGA
AATACTAGACCTAGAATTTGAAGAAGATATGACTTCCCGGACACCTTGCC
AAAGTTTACGAAGGTTATTAAAGTTTAAAGAATAATGAAGTTTTTTACTT
GCACGAATGAGTGAAACTATTCGATTACGATAAAATTTAAACCTACCTCG
AAGGAAAGATTTGAGATCCTTTGCAGAATCAGGAACGCTCAGATAGTCAT
TTTTGAGATTATCCCTGATTTTCATTGAGGTACGAATGCCACT
Run BLAST on NCBI

protein sequence of TCONS_00036701-protein

>TCONS_00036701-protein ID=TCONS_00036701-protein|Name=TCONS_00036701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
SGIRTSMKIRDNLKNDYLSVPDSAKDLKSFLRGRFKFYRNRIVSLIRASK
KLHYSLNFNNLRKLWQGVREVISSSNSRSSISLNINDSLSSCPQEVSEGF
NDFFSTIAGKIRSKNPFTRHHFSEWLSNERRNPNNFLISPVSKLELSKVL
MSLSENKASGPNSI
Run BLAST on NCBI

transcript from alignment at sc0001500:49624..50116

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036701 ID=TCONS_00036701|Name=TCONS_00036701|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at sc0001500:49624..50116 (Clytia hemisphaerica)
AGTGGCATTCGTACCTCAATGAAAATCAGGGATAATCTCAAAAATGACTA
TCTGAGCGTTCCTGATTCTGCAAAGGATCTCAAATCTTTCCTTCGAGGTA
GGTTTAAATTTTATCGTAATCGAATAGTTTCACTCATTCGTGCAAGTAAA
AAACTTCATTATTCTTTAAACTTTAATAACCTTCGTAAACTTTGGCAAGG
TGTCCGGGAAGTCATATCTTCTTCAAATTCTAGGTCTAGTATTTCTCTCA
ACATCAATGACTCTCTTTCTTCATGTCCTCAAGAAGTCTCAGAGGGCTTC
AATGATTTCTTCTCAACGATTGCTGGTAAGATACGATCAAAAAACCCTTT
CACACGTCATCACTTTTCTGAATGGCTATCAAATGAACGTCGAAATCCTA
ATAACTTTCTCATCTCGCCAGTCTCCAAACTCGAACTCTCTAAAGTTTTA
ATGTCCTTGAGTGAGAACAAAGCTTCTGGTCCCAATAGCATCC

Coding sequence (CDS) from alignment at sc0001500:49624..50116

>TCONS_00036701 ID=TCONS_00036701|Name=TCONS_00036701|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0001500:49624..50116 (Clytia hemisphaerica)
AGTGGCATTCGTACCTCAATGAAAATCAGGGATAATCTCAAAAATGACTA
TCTGAGCGTTCCTGATTCTGCAAAGGATCTCAAATCTTTCCTTCGAGGTA
GGTTTAAATTTTATCGTAATCGAATAGTTTCACTCATTCGTGCAAGTAAA
AAACTTCATTATTCTTTAAACTTTAATAACCTTCGTAAACTTTGGCAAGG
TGTCCGGGAAGTCATATCTTCTTCAAATTCTAGGTCTAGTATTTCTCTCA
ACATCAATGACTCTCTTTCTTCATGTCCTCAAGAAGTCTCAGAGGGCTTC
AATGATTTCTTCTCAACGATTGCTGGTAAGATACGATCAAAAAACCCTTT
CACACGTCATCACTTTTCTGAATGGCTATCAAATGAACGTCGAAATCCTA
ATAACTTTCTCATCTCGCCAGTCTCCAAACTCGAACTCTCTAAAGTTTTA
ATGTCCTTGAGTGAGAACAAAGCTTCTGGTCCCAATAGCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021675XLOC_021675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036701-exon-sc0001500-1491911889:49624..50116TCONS_00036701-exon-sc0001500-1491911889:49624..50116Clytia hemisphaericaexon
TCONS_00036701-exon-sc0001500-1510915933:49624..50116TCONS_00036701-exon-sc0001500-1510915933:49624..50116Clytia hemisphaericaexon
TCONS_00036701-exon-sc0001500-1575043694:49624..50116TCONS_00036701-exon-sc0001500-1575043694:49624..50116Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036701-proteinTCONS_00036701-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001500supercontigsc0001500:49624..50116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18732	0.561864	0.857549	1.42974	1.4908	3.0117	0.452489	0.412614	0.232984	0.692817	0.328293	0.412479	1.60261	0.230273	1.00518	0.614931	0.468891	1.27046	1.8707	0.920615	0.729708	0	0.289029	0.0310457	2.06162	0.334042	0	0	0.442042	0.299371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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