TCONS_00036695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036695
Unique NameTCONS_00036695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036695 ID=TCONS_00036695|Name=TCONS_00036695|organism=Clytia hemisphaerica|type=transcript|length=883bp
CCCCCTCCTTTCAAGACTCTATGTAATGTTAAATTAGGGATTACCTACCg
agtgttttcaaaaaaagttaacaaGTTTGAGTTTAGATTCTGAGAAAGCC
AAAAATGATATTAGATATAAACTTTTGTTGATTCCTTTTATGGGGGTACA
TACTGTTTATGTATGTATTGCATATTACCCAAATTATTATCAATGCATCC
ATACTCATTTAATAGGGATTTTCCCGTAGAAAAAGGTTGAAAGGCTGTAA
TTTCGGTCTCTTACGAGTCCTAGAATCTCCTAGAAAAGTGCAATCGATTG
GAAAACTTCtggtttaaaatattctttccttgtgtattttgtttaaaata
cgTCAAGAAACGATACGGGGAAAGTGCATCTGCCCATACAAACGGCACGT
TCATGTGTCAGTATTTCACCAATCGGCAACGCACAAAGCCTGAAAATAGA
AAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAATTCGTGCTCGCTGT
AATTCGTTGTAAATTACTTGCAAATGTACTCTCTATTTTATTAACACGAG
cctagaaaattacaaaaattaagaacaattcaagggcGTCTCGCAACTAA
CAGCAGCGTTCCATAAGGGAACTAATTTACGGTAACTTACGCGTTTTAGG
GTGTCTACAAACTACTTTAATCGTATAAATTTTAAAcgctaattttagcg
ttttagcgattTTTCCCTGTTtccgctaaaataaatctcgctaaaacacg
ccgaatcgacagatcgctaaaatttatccacgtgaaatttctggttatat
tgccttgatacatttttatcaataggaagggtttcagtgcaaagaaatgc
tagaaaacgaattcagtcaataatgtaataaga
Run BLAST on NCBI

transcript from alignment at sc0001499:44489..45371

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036695 ID=TCONS_00036695|Name=TCONS_00036695|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0001499:44489..45371 (Clytia hemisphaerica)
tcttattacattattgactgaattcgttttctagcatttctttgcactga
aacccttcctattgataaaaatgtatcaaggcaatataaccagaaatttc
acgtggataaattttagcgatctgtcgattcggcgtgttttagcgagatt
tattttagcggaAACAGGGAAAaatcgctaaaacgctaaaattagcgTTT
AAAATTTATACGATTAAAGTAGTTTGTAGACACCCTAAAACGCGTAAGTT
ACCGTAAATTAGTTCCCTTATGGAACGCTGCTGTTAGTTGCGAGACgccc
ttgaattgttcttaatttttgtaattttctaggCTCGTGTTAATAAAATA
GAGAGTACATTTGCAAGTAATTTACAACGAATTACAGCGAGCACGAATTA
TTCCTCCCTCTCTTCGTTTCCTCTAGCCTTCTTTCTATTTTCAGGCTTTG
TGCGTTGCCGATTGGTGAAATACTGACACATGAACGTGCCGTTTGTATGG
GCAGATGCACTTTCCCCGTATCGTTTCTTGAcgtattttaaacaaaatac
acaaggaaagaatattttaaaccaGAAGTTTTCCAATCGATTGCACTTTT
CTAGGAGATTCTAGGACTCGTAAGAGACCGAAATTACAGCCTTTCAACCT
TTTTCTACGGGAAAATCCCTATTAAATGAGTATGGATGCATTGATAATAA
TTTGGGTAATATGCAATACATACATAAACAGTATGTACCCCCATAAAAGG
AATCAACAAAAGTTTATATCTAATATCATTTTTGGCTTTCTCAGAATCTA
AACTCAAACttgttaactttttttgaaaacactcGGTAGGTAATCCCTAA
TTTAACATTACATAGAGTCTTGAAAGGAGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021669XLOC_021669Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036695-exon-sc0001499-1491911889:44489..45371TCONS_00036695-exon-sc0001499-1491911889:44489..45371Clytia hemisphaericaexon
TCONS_00036695-exon-sc0001499-1510915933:44489..45371TCONS_00036695-exon-sc0001499-1510915933:44489..45371Clytia hemisphaericaexon
TCONS_00036695-exon-sc0001499-1575043694:44489..45371TCONS_00036695-exon-sc0001499-1575043694:44489..45371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001499supercontigsc0001499:44489..45371 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.399942	0.650799	0.304109	0.859058	2.66041	1.65068	2.14144	2.22979	1.49799	0.819013	0.568141	1.49509	0.976863	0.987873	1.36522	0.943283	1.05757	1.01361	1.3238	2.13054	1.71889	2.30765	0.735415	0.961581	0.734691	1.56001	1.92237	1.41184	2.19706	2.26024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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