TCONS_00036692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036692
Unique NameTCONS_00036692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036692 ID=TCONS_00036692|Name=TCONS_00036692|organism=Clytia hemisphaerica|type=transcript|length=333bp
CCACTATGTCAGTATATTAATTTACTTCTATTCCATCTTTTTAGAACGAT
CACATTGAAAGCTACATTGCTGAAAACAACTATTGTAAAgcTACTCTGGA
TTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTGA
TGGACGAAATTTTAACGGAGAACGAGTTTGCCACCTGCACTGTCAAAGGA
CAAGGCCAAACAGATCAGGAAGGAATCTGTGAGGAAAAGAGAGAAATTAT
TGAAAGTAAGTGTATTTACCACAAATACGATTTTAGTCTTAAGattttat
gtctttttttatataaaaatatgtaGTTCGGAA
Run BLAST on NCBI

transcript from alignment at sc0001499:46421..47045-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036692 ID=TCONS_00036692|Name=TCONS_00036692|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at sc0001499:46421..47045- (Clytia hemisphaerica)
CCACTATGTCAGTATATTAATTTACTTCTATTCCATCTTTTTAGAACGAT
CACATTGAAAGCTACATTGCTGAAAACAACTATTGTAAAGTAAGCTCACT
CTAAATGATTTCTATAATGATTTTCCTCCAGCTCCCACTGGAAAAATTGT
CAAAATTGGTTGGAAAGATACCCTTAATGTTTACCCCATTCTAAAATTAC
CTTATTATGATTTTATCACCATGGCCGATTAGTATTTGTTGAAAGGACTA
GGGAAATTCGAAACAAAAATATGATATCACGTGGAGTAGTAAAAGTTTTC
TGAGGTAGGAACGTGTTCATGCTTACACTATGACTTAGGAAAATAAATGA
ATAAGTAATTTTTTATTTTTTTTATTTCAAGGCTACTCTGGATTCTATAT
CCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTGATGGACGAA
ATTTTAACGGAGAACGAGTTTGCCACCTGCACTGTCAAAGGACAAGGCCA
AACAGATCAGGAAGGAATCTGTGAGGAAAAGAGAGAAATTATTGAAAGTA
AGTGTATTTACCACAAATACGATTTTAGTCTTAAGATTTTATGTCTTTTT
TTATATAAAAATATGTAGTTCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021666XLOC_021666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036692-exon-sc0001499-1575043694:46957..47045TCONS_00036692-exon-sc0001499-1575043694:46957..47045Clytia hemisphaericaexon
TCONS_00036692-exon-sc0001499-1575043694:46421..46664TCONS_00036692-exon-sc0001499-1575043694:46421..46664Clytia hemisphaericaexon
TCONS_00036692-exon-sc0001499-1510915933:46957..47045TCONS_00036692-exon-sc0001499-1510915933:46957..47045Clytia hemisphaericaexon
TCONS_00036692-exon-sc0001499-1510915933:46421..46664TCONS_00036692-exon-sc0001499-1510915933:46421..46664Clytia hemisphaericaexon
TCONS_00036692-exon-sc0001499-1491911889:46957..47045TCONS_00036692-exon-sc0001499-1491911889:46957..47045Clytia hemisphaericaexon
TCONS_00036692-exon-sc0001499-1491911889:46421..46664TCONS_00036692-exon-sc0001499-1491911889:46421..46664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001499supercontigsc0001499:46421..47045 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.451287	0.554585	0	0	0.304887	0	0.344361	0.644276	0	0.362247	0	0	0.661002	2.09304	3.48636	2.41142	4.12494	1.82482	3.2485	0.616641	1.75339	0	0.374501	0	0.822448	0.392307	0.837361	1.58777	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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