TCONS_00036689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036689
Unique NameTCONS_00036689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036689 ID=TCONS_00036689|Name=TCONS_00036689|organism=Clytia hemisphaerica|type=transcript|length=431bp
CAACAGAAACGCGCATAAGGTAATCGACAACTAGAATAAAGAGAAATGGT
GCAAGGGTATCACCCTGGAGAATAccagctaaaatagaaaaggtTGAAGT
CTCACCATCAGGTGTTTGTACTGAAGATTCTGTATTAGTGTACAGAAGTT
TTATGGCATCAATGATCTTTTGAGGGATACCGTAAAGAGAGAGAATATCA
AACATTAAGTAGCGATCAACCGAATCAAAGGCTTTcttgaaatcaacaaa
aatcaaaattgcttCAAGATTGAAGTTTCTAGCTTCCTCTAAGATTTGTC
GAAGAGCAAGAACTTGGCTTAAAGTAGAACAACCACTTCGAAAACCGTTT
TGATTTTTACGAAGAATGGGTTCAACATGAAGCCGTATTCTATTTAGAAG
AAGCTTATTATAGATTTTTGCTGCGATTGGA
Run BLAST on NCBI

protein sequence of TCONS_00036689-protein

>TCONS_00036689-protein ID=TCONS_00036689-protein|Name=TCONS_00036689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
PIAAKIYNKLLLNRIRLHVEPILRKNQNGFRSGCSTLSQVLALRQILEEA
RNFNLEAILIFVDFKKAFDSVDRYLMFDILSLYGIPQKIIDAIKLLYTNT
ESSVQTPDGETSTFSILAGILQGDTLAPFLFILVVDYLMRVSV
Run BLAST on NCBI

transcript from alignment at sc0001497:52005..52435

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036689 ID=TCONS_00036689|Name=TCONS_00036689|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0001497:52005..52435 (Clytia hemisphaerica)
TCCAATCGCAGCAAAAATCTATAATAAGCTTCTTCTAAATAGAATACGGC
TTCATGTTGAACCCATTCTTCGTAAAAATCAAAACGGTTTTCGAAGTGGT
TGTTCTACTTTAAGCCAAGTTCTTGCTCTTCGACAAATCTTAGAGGAAGC
TAGAAACTTCAATCTTGaagcaattttgatttttgttgatttcaagAAAG
CCTTTGATTCGGTTGATCGCTACTTAATGTTTGATATTCTCTCTCTTTAC
GGTATCCCTCAAAAGATCATTGATGCCATAAAACTTCTGTACACTAATAC
AGAATCTTCAGTACAAACACCTGATGGTGAGACTTCAaccttttctattt
tagctggTATTCTCCAGGGTGATACCCTTGCACCATTTCTCTTTATTCTA
GTTGTCGATTACCTTATGCGCGTTTCTGTTG

Coding sequence (CDS) from alignment at sc0001497:52005..52435

>TCONS_00036689 ID=TCONS_00036689|Name=TCONS_00036689|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0001497:52005..52435 (Clytia hemisphaerica)
CCAATCGCAGCAAAAATCTATAATAAGCTTCTTCTAAATAGAATACGGCT
TCATGTTGAACCCATTCTTCGTAAAAATCAAAACGGTTTTCGAAGTGGTT
GTTCTACTTTAAGCCAAGTTCTTGCTCTTCGACAAATCTTAGAGGAAGCT
AGAAACTTCAATCTTGaagcaattttgatttttgttgatttcaagAAAGC
CTTTGATTCGGTTGATCGCTACTTAATGTTTGATATTCTCTCTCTTTACG
GTATCCCTCAAAAGATCATTGATGCCATAAAACTTCTGTACACTAATACA
GAATCTTCAGTACAAACACCTGATGGTGAGACTTCAaccttttctatttt
agctggTATTCTCCAGGGTGATACCCTTGCACCATTTCTCTTTATTCTAG
TTGTCGATTACCTTATGCGCGTTTCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021663XLOC_021663Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036689-proteinTCONS_00036689-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036689-exon-sc0001497-1491911889:52005..52435TCONS_00036689-exon-sc0001497-1491911889:52005..52435Clytia hemisphaericaexon
TCONS_00036689-exon-sc0001497-1510915933:52005..52435TCONS_00036689-exon-sc0001497-1510915933:52005..52435Clytia hemisphaericaexon
TCONS_00036689-exon-sc0001497-1575043694:52005..52435TCONS_00036689-exon-sc0001497-1575043694:52005..52435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001497supercontigsc0001497:52005..52435 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.83543	3.11679	4.34267	4.95673	2.37063	1.36241	3.90375	3.46229	2.5587	2.83575	2.59054	2.87367	3.29482	3.09057	1.99639	2.53197	1.55959	2.95113	1.18917	3.55537	2.62672	2.93928	1.64911	1.99904	6.00532	5.3596	1.97218	1.40317	2.30589	1.62647
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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