TCONS_00036679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036679
Unique NameTCONS_00036679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036679 ID=TCONS_00036679|Name=TCONS_00036679|organism=Clytia hemisphaerica|type=transcript|length=698bp
AAGTGTTTTGAAATACAAAAAAGGCGAAATAGTGCCTAAACCTCGTGCCT
TTTATTGGAAGAAGGTCGATCCTGTAATCCAGATTGAAAGAATTTGAAAC
GAAATCAGATGCAGTTGTAAAATTTGAACTTGAGCATTTCACAAACCACG
CACGAGGTTTTTCATCTACAACAACAATGTCTGGAGATTGGTTTCAAAAT
GTCAATGGGGAACtacgtgccaaatttcaagAGCAtcaaatttcagagaa
aaacTTGATCGAAACACTTTGCTTGCACGATAACCGTATTGAACTACTCA
AAATGATGAATTTCACCGTCAGGCAGATACTGCTTTTTGAGCAGTTGCGA
AATCGAATTGTTGGGGATTGTAAAATCAACACTCAACAGCAACAGCTTAC
CCCTTCAACTCAAAGATTCCAGAGAGGAAGAAAGAACTTACTACAACGAG
AGCTTCGAGAAGCTGCTGCAAATAGATGGCCATTGGAGTCCACTCCGCCA
AAATTTGACTCAGATAAATCCAAAGATGAGCTGACAAACTTTGTGcaaaa
gattgccaaaaagcAAACGTTTTCGGATATGGGTGAAAATGCTATTCGCA
AAAAGCTGGTTGGGATCTTTCAACAAAGGCGACGTGTTAAAAGACCATCT
CAACTCAATTATGAGTCAGCCACTGCTCAAAAGAAGCCAAGAGGGCAG
Run BLAST on NCBI

protein sequence of TCONS_00036679-protein

>TCONS_00036679-protein ID=TCONS_00036679-protein|Name=TCONS_00036679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MSGDWFQNVNGELRAKFQEHQISEKNLIETLCLHDNRIELLKMMNFTVRQ
ILLFEQLRNRIVGDCKINTQQQQLTPSTQRFQRGRKNLLQRELREAAANR
WPLESTPPKFDSDKSKDELTNFVQKIAKKQTFSDMGENAIRKKLVGIFQQ
RRRVKRPSQLNYESATAQKKPRGQ
Run BLAST on NCBI

transcript from alignment at sc0001496:43153..46136+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036679 ID=TCONS_00036679|Name=TCONS_00036679|organism=Clytia hemisphaerica|type=transcript|length=2984bp|location=Sequence derived from alignment at sc0001496:43153..46136+ (Clytia hemisphaerica)
AAGTGTTTTGAAATACAAAAAAGGCGAAATAGTGCCTAAACCTCGTGCCT
TTTATTGGAAGAAGGTCGATCCTGTAATCCAGATTGAAAGAATTTGAAAC
GAAATCAGATGCAGTTGTAAAATTTGAACTTGAGCATTTCACAAGTAAGT
AGATATTTACCTTGAATTTTACTATCACAATACATAAAAAGTATTGAAAA
AACTGCATGAAATTTGTGGTGTAGAAAATATGACCATTTTTACAAGTTTA
TCAGCACTCATCATTTGGAAGTCCAAGTTTTACACTGTACCAGTGAACAG
ACTTAATTTTCTGAAATATCACAACATCAATTCTAGTGTAAAccacaaaa
ttttgatttctagGATTTTAAAGGATCACATTATTCAACATTATTTATCT
CATCAGACCACGCACGAGGTTTTTCATCTACAACAACAATGTCTGGAGAT
TGGTTTCAAAATGTCAATGGGGAACtacgtgccaaatttcaaggTTTATA
CATATTATACATTACTTTAAAGTTGCTTTGGTTTTTTGTTGAAACTGAAT
GTTAAGAGTTCTTCTGTCTCACAATTGGATTTGCTGAtccttttctattt
ctatttggttgagttcgCAGGAGGCCTCCAGGCtccagcaccttgaactg
actacccaattcccctcacatggcatggcgGGTTGAACCGCTGTGTGAGT
GTGAGTGGGAATCAAACCTCAGTGTCGCCTGTACAAAAATTGGTGTAAAA
TTATTATTGTCTTATTAAAAGGtaggaaaattgttttttgactAGTTAAA
CTATAGTGTATAGTTCTGTATATTGCTTCTGAAACCTGTTCTTGATGttg
attgttttctttctttgattcaGAGCAtcaaatttcagagaaaaacTTGA
TCGAAACACTTTGCTTGCACGATAACCGTATTGAACTACTCAAAATGATG
AATTTCACCGTCAGGCAGATACTGCTTTTTGAGCAGTTGCGAAATCGAAT
TGTTGGGGATTGTAAAATCAACACTCAACAGCAACAGCTTACCCCTTCAA
CTCAAAGATTCCAGAGAGGAAGAAAGAACTTACTGTAAGTAACCAGGTTT
TGTAATTTAATACCTGACAGGGCAGGGGGGTTGGTAGTAAAATCTCTACA
CGGTGtgacgaaaaattaaaaaaaaaattctactgcTAAGGGTAGTTAAA
ATACTAATAAGGGTCGTATCTATgtgctaaattttgaaaaaattttacta
cctgggtagtaaaaactggtaaaattagcaaatttcagttatttttgtaa
ttctttaattttttggatgacttttctgaaaaaaattttataatttgaaa
aaaatttttgttggaaagttgtttgctgcaaacaaaaatttctcaaaatt
ttttgtcaatataaaaagactttaattctaagacatcaaaacattaattt
ttgcactagctaagtgaaaaatgtgtcacagaaataatcattttttagct
ttttttgtaaaatcagtccgaaaagcaaccaaaaaataggtggtctctat
gaaaaattgtcccaaaaacttttactaccagggtaaaatacctcttccaa
gtgtctgggtggtggtatgtaaaaattcgtaaaaatccctttactactca
tatatgtctgagattttactaccgaccccccccccctggacagGGGTTAa
aagcattgagtttcaagcccgaagggctatagGCAAAACTGTATCCCTtt
tcaggcaagagaaattaaaGCCNtttactactcatatatgtctgagattt
tactaccgaccccgcCCCCCTGGACAGGGGTTAaaagcattgagtttcaa
gcccgaagggctatagGCAAAACTGTATCCCTtttcaggcaagagaaatt
aaagccacttatttcctatccAAAACNtgagtttcaagcccgaagggcta
tagGCAAAACTGTATCCCTtttcaggcaagagaaattaaagccacttatt
tcccatccaaaacgcgcatataATCCGCTGTagtcatgacgacggattgt
atctggcggttcctttgttttggaatactacattttttgaaatctagcga
tagattctAGATTTTAGTTTAAAAATGACCTTACAACCAATTNcatccaa
aacgcgcatagaatcCGCCGTAGTCaggacgacggattgtatctggcggt
tcctttgttttggaggactacattttttgaaatctagcgatagattctAG
ATTTTAGTTTAAAAATGACCTTACAACCAATTCTTTTATCAGACAACGAG
AGCTTCGAGAAGCTGCTGCAAATAGATGGCCATTGGAGTCCACTCCGCCA
AAATTTGACTCAGATAAATCCAAAGATGAGCTGACAAACTTTGTGcaaaa
gattgccaaaaagcAAACGTTTTCGGATATGGGTGAAAATGCTATTCGCA
AAAAGCTGGTTGGGATCTTTCAACAAAGGCGACGTGTTAAAAGACCATCT
CAACTCAATTATGTAAGTCAAACTCTGATCTACTTTCAAATTTCTTAATT
CAACCTCCTCGAAACAAAGTGTTTAAACCAGTGTTTTGATTGTTCAAATG
TACTCCAACCACACTTGATGGACTTTTGCATAATTTCTACACTGAAATTT
ATCCTTGTTATCATCAAAGAGggaaatttgagtaaattttcttttcagtt
aCTTTTGCAAGCATTGCGGAGGGTTCTGCCTGCGAGAAATTGTGTACCTA
AAATAGTCTTTATCTGTCTGTGGAGATAAAAGTGGGAGGGAGAGATAGAG
AGAGTGAGAGCAATCTGTATGCGAAGCAGGCCCAGGGGAAAAACCATAAG
AGTGGGGAAGCTGAAGACTCAAAGAGGTAGAGGTAGAACAGGAAATATCT
TCACATTAAGGCTGTAGTTTACACCAATCTGTTTCGTTCTTTTCACAGGA
GTCAGCCACTGCTCAAAAGAAGCCAAGAGGGCAG

Coding sequence (CDS) from alignment at sc0001496:43153..46136+

>TCONS_00036679 ID=TCONS_00036679|Name=TCONS_00036679|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0001496:43153..46136+ (Clytia hemisphaerica)
ATGTCTGGAGATTGGTTTCAAAATGTCAATGGGGAACtacgtgccaaatt
tcaagAGCAtcaaatttcagagaaaaacTTGATCGAAACACTTTGCTTGC
ACGATAACCGTATTGAACTACTCAAAATGATGAATTTCACCGTCAGGCAG
ATACTGCTTTTTGAGCAGTTGCGAAATCGAATTGTTGGGGATTGTAAAAT
CAACACTCAACAGCAACAGCTTACCCCTTCAACTCAAAGATTCCAGAGAG
GAAGAAAGAACTTACTACAACGAGAGCTTCGAGAAGCTGCTGCAAATAGA
TGGCCATTGGAGTCCACTCCGCCAAAATTTGACTCAGATAAATCCAAAGA
TGAGCTGACAAACTTTGTGcaaaagattgccaaaaagcAAACGTTTTCGG
ATATGGGTGAAAATGCTATTCGCAAAAAGCTGGTTGGGATCTTTCAACAA
AGGCGACGTGTTAAAAGACCATCTCAACTCAATTATGAGTCAGCCACTGC
TCAAAAGAAGCCAAGAGGGCAGATGTCTGGAGATTGGTTTCAAAATGTCA
ATGGGGAACtacgtgccaaatttcaagAGCAtcaaatttcagagaaaaac
TTGATCGAAACACTTTGCTTGCACGATAACCGTATTGAACTACTCAAAAT
GATGAATTTCACCGTCAGGCAGATACTGCTTTTTGAGCAGTTGCGAAATC
GAATTGTTGGGGATTGTAAAATCAACACTCAACAGCAACAGCTTACCCCT
TCAACTCAAAGATTCCAGAGAGGAAGAAAGAACTTACTACAACGAGAGCT
TCGAGAAGCTGCTGCAAATAGATGGCCATTGGAGTCCACTCCGCCAAAAT
TTGACTCAGATAAATCCAAAGATGAGCTGACAAACTTTGTGcaaaagatt
gccaaaaagcAAACGTTTTCGGATATGGGTGAAAATGCTATTCGCAAAAA
GCTGGTTGGGATCTTTCAACAAAGGCGACGTGTTAAAAGACCATCTCAAC
TCAATTATGAGTCAGCCACTGCTCAAAAGAAGCCAAGAGGGCAGATGTCT
GGAGATTGGTTTCAAAATGTCAATGGGGAACtacgtgccaaatttcaagA
GCAtcaaatttcagagaaaaacTTGATCGAAACACTTTGCTTGCACGATA
ACCGTATTGAACTACTCAAAATGATGAATTTCACCGTCAGGCAGATACTG
CTTTTTGAGCAGTTGCGAAATCGAATTGTTGGGGATTGTAAAATCAACAC
TCAACAGCAACAGCTTACCCCTTCAACTCAAAGATTCCAGAGAGGAAGAA
AGAACTTACTACAACGAGAGCTTCGAGAAGCTGCTGCAAATAGATGGCCA
TTGGAGTCCACTCCGCCAAAATTTGACTCAGATAAATCCAAAGATGAGCT
GACAAACTTTGTGcaaaagattgccaaaaagcAAACGTTTTCGGATATGG
GTGAAAATGCTATTCGCAAAAAGCTGGTTGGGATCTTTCAACAAAGGCGA
CGTGTTAAAAGACCATCTCAACTCAATTATGAGTCAGCCACTGCTCAAAA
GAAGCCAAGAGGGCAGATGTCTGGAGATTGGTTTCAAAATGTCAATGGGG
AACtacgtgccaaatttcaagAGCAtcaaatttcagagaaaaacTTGATC
GAAACACTTTGCTTGCACGATAACCGTATTGAACTACTCAAAATGATGAA
TTTCACCGTCAGGCAGATACTGCTTTTTGAGCAGTTGCGAAATCGAATTG
TTGGGGATTGTAAAATCAACACTCAACAGCAACAGCTTACCCCTTCAACT
CAAAGATTCCAGAGAGGAAGAAAGAACTTACTACAACGAGAGCTTCGAGA
AGCTGCTGCAAATAGATGGCCATTGGAGTCCACTCCGCCAAAATTTGACT
CAGATAAATCCAAAGATGAGCTGACAAACTTTGTGcaaaagattgccaaa
aagcAAACGTTTTCGGATATGGGTGAAAATGCTATTCGCAAAAAGCTGGT
TGGGATCTTTCAACAAAGGCGACGTGTTAAAAGACCATCTCAACTCAATT
ATGAGTCAGCCACTGCTCAAAAGAAGCCAAGAGGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021656XLOC_021656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036679-exon-sc0001496-1491911889:43153..43296TCONS_00036679-exon-sc0001496-1491911889:43153..43296Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1510915933:43153..43296TCONS_00036679-exon-sc0001496-1510915933:43153..43296Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1575043694:43153..43296TCONS_00036679-exon-sc0001496-1575043694:43153..43296Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1491911889:43559..43645TCONS_00036679-exon-sc0001496-1491911889:43559..43645Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1510915933:43559..43645TCONS_00036679-exon-sc0001496-1510915933:43559..43645Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1575043694:43559..43645TCONS_00036679-exon-sc0001496-1575043694:43559..43645Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1491911889:44026..44236TCONS_00036679-exon-sc0001496-1491911889:44026..44236Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1510915933:44026..44236TCONS_00036679-exon-sc0001496-1510915933:44026..44236Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1575043694:44026..44236TCONS_00036679-exon-sc0001496-1575043694:44026..44236Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1491911889:45445..45664TCONS_00036679-exon-sc0001496-1491911889:45445..45664Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1510915933:45445..45664TCONS_00036679-exon-sc0001496-1510915933:45445..45664Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1575043694:45445..45664TCONS_00036679-exon-sc0001496-1575043694:45445..45664Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1491911889:46101..46136TCONS_00036679-exon-sc0001496-1491911889:46101..46136Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1510915933:46101..46136TCONS_00036679-exon-sc0001496-1510915933:46101..46136Clytia hemisphaericaexon
TCONS_00036679-exon-sc0001496-1575043694:46101..46136TCONS_00036679-exon-sc0001496-1575043694:46101..46136Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036679-proteinTCONS_00036679-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001496supercontigsc0001496:43153..46136 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37848	1.69798	0.821467	0.0803677	1.07624	1.15972	1.49242	2.18311	2.01755	0.605833	1.32308	1.35293	0.965036	0.40088	0.164789	0.221055	0.490178	0.223296	0	0.161409	0.210441	0.615875	0.748676	0.302514	3.11582	2.91983	0	0	0.48316	0.246132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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