TCONS_00036678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036678
Unique NameTCONS_00036678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036678 ID=TCONS_00036678|Name=TCONS_00036678|organism=Clytia hemisphaerica|type=transcript|length=556bp
ctcgctaatgcGGAAAGtttacattttgattttgatcttTACAGAGTGTT
TCAAATAATGACGAAAAGAAGGTTCAACAATTGATGAAGGATTACAACAA
TCTGTATCGAACCAAATTGATTGAGATACTAAACAATCCATCAGAAAACG
GGCGTCAATTGCTGAATTATGTTTTCTCCTatgagaatttaaaaacaacT
GATTACATCATCAATTTCATTTGGCAAATGATTGAAGAAACAGTGGTTAA
TGAAGATGACCCAGATCAACCAGAATCGCAAGAGATTTTTGATAGTAACA
CCTTAATTCTATGcgaagaagaaaatttggctGGCATCGCTTGTTATTAT
GTAGATGTTACAGTAAGTACAATAGATTCTAGGCTNTTAGCGTAGTGATT
TCCTAGGAttatatttattatatatttttaggccAGTTCCTCGTGATTAG
GATGGAccattcttcttcttcttctttcttcgaGAGGGTCGAATGCGAGA
GTAGATATATTCAAACTAAATGAAGAAAGGAAAACGAAAATTCATAAATA
TTTGAC
Run BLAST on NCBI

protein sequence of TCONS_00036678-protein

>TCONS_00036678-protein ID=TCONS_00036678-protein|Name=TCONS_00036678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MKDYNNLYRTKLIEILNNPSENGRQLLNYVFSYENLKTTDYIINFIWQMI
EETVVNEDDPDQPESQEIFDSNTLILCEEENLAGIACYYVDVTVSTIDSR
XLA
Run BLAST on NCBI

transcript from alignment at sc0001495:55147..55702

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036678 ID=TCONS_00036678|Name=TCONS_00036678|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at sc0001495:55147..55702 (Clytia hemisphaerica)
GTCAAATATTTATGAATTTTCGTTTTCCTTTCTTCATTTAGTTTGAATAT
ATCTACTCTCGCATTCGACCCTCtcgaagaaagaagaagaagaagaatgg
TCCATCCTAATCACGAGGAACTggcctaaaaatatataataaatataaTC
CTAGGAAATCACTACGCTAANAGCCTAGAATCTATTGTACTTACTGTAAC
ATCTACATAATAACAAGCGATGCCagccaaattttcttcttcgCATAGAA
TTAAGGTGTTACTATCAAAAATCTCTTGCGATTCTGGTTGATCTGGGTCA
TCTTCATTAACCACTGTTTCTTCAATCATTTGCCAAATGAAATTGATGAT
GTAATCAgttgtttttaaattctcatAGGAGAAAACATAATTCAGCAATT
GACGCCCGTTTTCTGATGGATTGTTTAGTATCTCAATCAATTTGGTTCGA
TACAGATTGTTGTAATCCTTCATCAATTGTTGAACCTTCTTTTCGTCATT
ATTTGAAACACTCTGTAaagatcaaaatcaaaatgtaaaCTTTCCgcatt
agcgag

Coding sequence (CDS) from alignment at sc0001495:55147..55702

>TCONS_00036678 ID=TCONS_00036678|Name=TCONS_00036678|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0001495:55147..55702 (Clytia hemisphaerica)
CTACGCTAANAGCCTAGAATCTATTGTACTTACTGTAACATCTACATAAT
AACAAGCGATGCCagccaaattttcttcttcgCATAGAATTAAGGTGTTA
CTATCAAAAATCTCTTGCGATTCTGGTTGATCTGGGTCATCTTCATTAAC
CACTGTTTCTTCAATCATTTGCCAAATGAAATTGATGATGTAATCAgttg
tttttaaattctcatAGGAGAAAACATAATTCAGCAATTGACGCCCGTTT
TCTGATGGATTGTTTAGTATCTCAATCAATTTGGTTCGATACAGATTGTT
GTAATCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021655XLOC_021655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036678-proteinTCONS_00036678-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036678-exon-sc0001495-1491911889:55147..55702TCONS_00036678-exon-sc0001495-1491911889:55147..55702Clytia hemisphaericaexon
TCONS_00036678-exon-sc0001495-1510915933:55147..55702TCONS_00036678-exon-sc0001495-1510915933:55147..55702Clytia hemisphaericaexon
TCONS_00036678-exon-sc0001495-1575043694:55147..55702TCONS_00036678-exon-sc0001495-1575043694:55147..55702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001495supercontigsc0001495:55147..55702 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.204483	0.199403	0.242491	0.113256	0.689391	0.217906	0.131447	0.738357	0.430784	0.747034	0.932258	0.136184	0.203992	0.423696	0.232224	0.062303	57.2571	63.6428	2.39107	0.909847	50.9092	48.6026	7.03367	7.14067	15.2583	13.7156	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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