|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036672 ID=TCONS_00036672|Name=TCONS_00036672|organism=Clytia hemisphaerica|type=transcript|length=893bp
gctggatatggcggtctgttcttactgaactaaagaaaaaagtctgctgg
aaaaaagtggtctgttctactgaagattgggaccagctggaNTAGACTTG
AAGCAATATGACGAAGCGACCACTTATGCCAGGAAAGCCATGGAGTACAC
CGAGGTGTTGTCCGACCGCTCAATGTTCGATGGTGTAGAAGGCGAAGAAG
CTGTGCATCAGGTATTGAAAGATGGACTCATTCTGTGCAAAGTGATCAAT
ATGCTGTACCCAGGCTCCGTAcgaaaagtaaacaaaattaAACAACCCTT
CATGATGATGGAGAATATCTCGGCTTTCTTGGACGCTTGTGTAGCCTATG
GTGTCCACCGCGGTGATTTATTCCAAACGGTTGATTTGTATGAACGTTAA
ACAAGGTTTCTGTCATCCAGGGTATCTTTGCGCTCGGCCGTAAAGCGCAG
ACCAATGGTTACCGAGGCGCCGTTCTGGGTCCTAAAGAAGCCTCAGAAAA
CCACCGTGAATTCACGTATGATCAAATGAACGAAGGGTTTAATATCACAG
GCTTACAAATGGGATCCAACAAAGGCGCAAATCAATCGGGAGTCAATTTT
GGGAAGTCTAGGTTTATTATGGACTAACTTTTAATATTGTAACTTTTCTT
TTGTATTCCATTTATTTGGCGCTCCTTTTCATAGTATTCCAAGGGTAATG
TTTTTAAATCTGCAATCGTAATCCAacgatatttttttgaaattttgtga
aaaatgatACATATTATTTTTACCTGAGAATATTCGAACAAATTTAATTC
CGGGGTTCCATAATATAGTAAGgaagaatttgaatttgaatttttagttA
GAGTTTTTATTATTTATGTCTTTATGCTATACGTAACTGTCAA Run BLAST on NCBI transcript from alignment at sc0001493:35118..38848- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036672 ID=TCONS_00036672|Name=TCONS_00036672|organism=Clytia hemisphaerica|type=transcript|length=3731bp|location=Sequence derived from alignment at sc0001493:35118..38848- (Clytia hemisphaerica)
GCTGGATATGGCGGTCTGTTCTTACTGAACTAAAGAAAAAAGTCTGCTGG
AAAAAAGTGGTCTGTTCTACTGAAGATTGGGACCAGCTGGANTAGACTTG
AAGCAATATGACGAAGCGACCACTTATGCCAGGAAAGCCATGGAGTACAC
CGAGGTAGGGATTTTAATGAGTGATGTTGTTCATATACACGCTTTTTTTT
GTAAGAATGGTGTTTTTCCAATTTATCATGAATGTTCCTAACTTTTTGGG
AAAAATCATCCTGAAACATTCTTAGGTTTTGAAACCCAGCCAAAATCTAG
TATGCAATACATACCTCAAGCAAAGATTTAGTGTCTATCCCTATGCTATG
TCAGGCTCGTATTATGATTAGCCTTCTATTGCTCTCAAACAATAGAGCTA
TTTCTTGGGTTTTGGGTACCAAAAACTGAGCCTGCATATACTTATAAACT
TTATGCTTATAAAAGAAAAAACATTTAATGGTGAAATGCTCTAAAAATGG
CATTCTTAGGTTCAGTTGCCAGATTCTATGTTGCCGTTATATTCTTAATT
TTTGGCCGATTTCATCATAAATATTCTTATAAAGTATATTATTTTTAAAA
AACAGGCCATTCCGCTACACTGTTCAAAAAAAGGCTTGATTCCGTTCTCC
TTTTAACCGTAGCATGTTTGTGTGTACATTAAAAGAAGAAATTTTGGCAG
GAATTTAATTTGGCGGATGGCCGAAAAAGTTTTTTCAGAGGAAATTTAAT
TTGGCGGTTAACTTGAAAAATTAAACTTGGCGGATGAAGGACATTTTTGT
CCAAAAAACGTCATTAAAAAAGGATTTGGGGGAATAAATAGATAGGGCAA
TCTAAATTTGGCGGGAATTTAATTTGGCGGATGACGGTAAAAATAAAATT
TGCCGGGAACTTAATTTGGCGGATTTTGACCAAATCCGCCGAATCCGCCA
AATTAAGTTCCCGCCAATATTTCTTCTCCCGCTAATCTGAACCTCTTTTG
TTCGAACCTTTCTATTATTCGAACTAATTCTCGGTTCCCGTGAAAGGGAA
AGCCTCGTAAACTACTTTCTATAACTATACTCTTTCTGCAATTCGAACAA
ATTAGAATTCCCGTTCGACTTCGAATTAGCGAGAGTTAACTGTATGATGT
GTTTTCCTGCGACGGAGACGGCTAGCTTCTGACTTGTCTAGATTCTGATT
GACTGAGGACGACGGTAAATCAGCGCTTTTGCCATTGATTTTAAACCCCC
AAAGGGGGTAGAGATGAATCTCTAACCTTTCTCAAGCAAGCAAGAAGCCT
GAAGATTTGCACGCATTTAGAATGAGGGGTTGAATCTAGCCCTTTCTTTG
TTTTTAAGCGGCATATTTTTCGAAATCTAGCGATAGGTTTTACTTTCAAT
AGGGAGTTTGTCTGAAAACCACACGGGTCATGCGTTTTGGATGGAAAATA
AGAAGTTTCATTTCCCATCCAGGAGTTCTGGGTCTGGCCCCTTCGGGGAT
TTGAAATCATCGACTTTTATTGTCCTCGATTTTGTGGGTAAATACTGCGG
TTTATACAAAATCGCTTCAGAGACTCCACCGTCCTCAAATAAAAAACTTA
TAATAAGAACCTGCTCGTGAAACGCTCCCCGAGGTATAAGCATAGACACA
GACAACCTTTTGGTAAACAACAATGTTTTCTTTTTTCTCTGACAGAATCG
TGACGAAGGGAAAACATTGATGTTCGAAATCAATCAGATGAGCTCAAGTG
TGAAGTGAATCAAAAAAATTTGAATTTTTTGTATAATATTCAACCACTGC
TCATTTTTTTCTTTCCAACAGTGAAGAATTGTTAGATAATGAATAATGAA
TTTCTTTTCTCCATACATTTCTGACACCCATATAAACGTAATCATTTTAT
CGGTTGCCCTCTTGATTATTTTGAATATGAGCTATTTATAATTTCTTACC
CCTTTTCTGTGTTTTTTTATATTATGTTTTTCTTCTCGAAATCACTTCAC
TTTTGGGCGACCGTTGAGCCGTAGTGTTTTGATTGCGTTCAAAGGATTTT
CGTTAGATAGCCTGTGTAGCGACATAATAAACAATGGCTCATCGCCCACG
CGCCTACGGTCTAACGGCTGAAGTAAACAGTAAGATCAAGAGTAAATATG
AACTAGAAGATGAGGCCAAAAAAATAAGTAGTCTTGTTTCCGGAAATCGG
CCGGGTGAACTTTTTTTTGGAAAAAATATATCTCACCCGGCCGCAAATAG
AAAAAAACAGCGAGCTCGTCGAAATAAAAAAGATACATAAAGAGTTTATT
TTCCATTTTACGATTTTACGATCCATTTAACGATTGTATTCAAAGATTTA
TAAAGAGTTTATTTTCCATTTTACGATTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATTCAAAGATTTACGTATGTCACTTGTGTTT
TGAAAAAGAAAATCTTCTGTCACAAATGTTTTCTACTTTCCTGTTTTATG
TTGTTGTGAATAGAATTACCTTAGTCTTTTCTGGCTGAACATTATTTACC
TTATCGGGGAAAACCTCGTCGGGGAAAATTTTCGTCGGGGAAAAATATTC
GTCACTTGCTGGTAGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTCGT
CGGGGAAAAATATTCGTCACTTGCTGGTAGTTGGTAAACGCATTAAGGCC
GGGGAAAATTTTCGTCACTTGGCCAAAATTTCGTCACTTTTCCCCGACGA
TATTTTCCCCGATAAGGTAAATAATGTTCAGCCAGAGGTATGAACTTGTA
GTAACTATTTTGAATACGGATTTCTCCGCCCTACTTTCTATCATTAATTT
TACCTGTCAACCACTTAACATCTTTTCTGTTTATTCCTCAAGGTGTTGTC
CGACCGCTCAATGTTCGATGGTGTAGAAGGCGAAGAAGCTGTGCATCAGG
TATTGAAAGATGGACTCATTCTGTGCAAAGTGATCAATATGCTGTACCCA
GGCTCCGTACGAAAAGTAAACAAAATTAAACAACCCTTCATGATGATGGA
GAATATCTCGGCTTTCTTGGACGCTTGTGTAGCCTATGGTGTCCACCGCG
GTGATTTATTCCAAACGGTTGATTTGTATGAACGTTAAACAAGGTTTCTG
TCATCCAGGGTATCTTTGCGCTCGGCCGTAAAGCGCAGACCAATGGTTAC
CGAGGCGCCGTTCTGGGTCCTAAAGAAGCCTCAGAAAACCACCGTGAATT
CACGTATGATCAAATGAACGAAGGGTTTAATATCACAGGCTTACAAATGG
GATCCAACAAAGGCGCAAATCAATCGGGAGTCAATTTTGGGAAGTCTAGG
TTTATTATGGACTAACTTTTAATATTGTAACTTTTCTTTTGTATTCCATT
TATTTGGCGCTCCTTTTCATAGTATTCCAAGGGTAATGTTTTTAAATCTG
CAATCGTAATCCAACGATATTTTTTTGAAATTTTGTGAAAAATGATACAT
ATTATTTTTACCTGAGAATATTCGAACAAATTTAATTCCGGGGTTCCATA
ATATAGTAAGGAAGAATTTGAATTTGAATTTTTAGTTAGAGTTTTTATTA
TTTATGTCTTTATGCTATACGTAACTGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036672-exon-sc0001493-1575043694:38695..38848 | TCONS_00036672-exon-sc0001493-1575043694:38695..38848 | Clytia hemisphaerica | exon |
| TCONS_00036672-exon-sc0001493-1575043694:35118..35856 | TCONS_00036672-exon-sc0001493-1575043694:35118..35856 | Clytia hemisphaerica | exon |
| TCONS_00036672-exon-sc0001493-1510915933:38695..38848 | TCONS_00036672-exon-sc0001493-1510915933:38695..38848 | Clytia hemisphaerica | exon |
| TCONS_00036672-exon-sc0001493-1510915933:35118..35856 | TCONS_00036672-exon-sc0001493-1510915933:35118..35856 | Clytia hemisphaerica | exon |
| TCONS_00036672-exon-sc0001493-1491911889:38695..38848 | TCONS_00036672-exon-sc0001493-1491911889:38695..38848 | Clytia hemisphaerica | exon |
| TCONS_00036672-exon-sc0001493-1491911889:35118..35856 | TCONS_00036672-exon-sc0001493-1491911889:35118..35856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001493 | supercontig | sc0001493:35118..38848 - |
Blast
BLAST of TCONS_00036672 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 2.992e-20 Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 2
Query: 191 GEEAVHQVLKDGLILCKVINMLYP---GSVRKVNKIKQPFMMMENISAFLDACVAYGVHRGDLFQTVDLYE 394
G E LKDG +LC++IN LYP V+K+ F ME IS FL A YG++ D+FQTVDL+E
Sbjct: 48 GRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWE 118 HSP 2 Score: 47.7506 bits (112), Expect = 2.992e-20 Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 481 PKEASENHREFTYDQMNEGFNITGLQMGSNKGANQSGVN-FGKSR 612
PK++ EN R F+ +Q+ EG N+ GLQMG+N+GA+Q+G+ +G R
Sbjct: 152 PKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPR 196
The following BLAST results are available for this feature:
|
