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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036671 ID=TCONS_00036671|Name=TCONS_00036671|organism=Clytia hemisphaerica|type=transcript|length=891bp
ttTTCTTCTCGAAATCACTTCACTTTTGGGCGACCGTTGAGCCGTAGTGT
TTTGATTGCGTTCAAAGGATTTTCGTTAGATAGCCTGTGTAGCGACATAA
TAAACAATGGCTCATCGCCCACGCGCCTACGGTCTAACGGCTGAAGTAAA
CAGTGTTGTCCGACCGCTCAATGTTCGATGGTGTAGAAGGCGAAGAAGCT
GTGCATCAGGTATTGAAAGATGGACTCATTCTGTGCAAAGTGATCAATAT
GCTGTACCCAGGCTCCGTAcgaaaagtaaacaaaattaAACAACCCTTCA
TGATGATGGAGAATATCTCGGCTTTCTTGGACGCTTGTGTAGCCTATGGT
GTCCACCGCGGTGATTTATTCCAAACGGTTGATTTGTATGAACGTTAAAC
AAGGTTTCTGTCATCCAGGGTATCTTTGCGCTCGGCCGTAAAGCGCAGAC
CAATGGTTACCGAGGCGCCGTTCTGGGTCCTAAAGAAGCCTCAGAAAACC
ACCGTGAATTCACGTATGATCAAATGAACGAAGGGTTTAATATCACAGGC
TTACAAATGGGATCCAACAAAGGCGCAAATCAATCGGGAGTCAATTTTGG
GAAGTCTAGGTTTATTATGGACTAACTTTTAATATTGTAACTTTTCTTTT
GTATTCCATTTATTTGGCGCTCCTTTTCATAGTATTCCAAGGGTAATGTT
TTTAAATCTGCAATCGTAATCCAacgatatttttttgaaattttgtgaaa
aatgatACATATTATTTTTACCTGAGAATATTCGAACAAATTTAATTCCG
GGGTTCCATAATATAGTAAGgaagaatttgaatttgaatttttagttAGA
GTTTTTATTATTTATGTCTTTATGCTATACGTAACTGTCAA Run BLAST on NCBI transcript from alignment at sc0001493:35118..36871- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036671 ID=TCONS_00036671|Name=TCONS_00036671|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0001493:35118..36871- (Clytia hemisphaerica)
TTTTCTTCTCGAAATCACTTCACTTTTGGGCGACCGTTGAGCCGTAGTGT
TTTGATTGCGTTCAAAGGATTTTCGTTAGATAGCCTGTGTAGCGACATAA
TAAACAATGGCTCATCGCCCACGCGCCTACGGTCTAACGGCTGAAGTAAA
CAGTAAGATCAAGAGTAAATATGAACTAGAAGATGAGGCCAAAAAAATAA
GTAGTCTTGTTTCCGGAAATCGGCCGGGTGAACTTTTTTTTGGAAAAAAT
ATATCTCACCCGGCCGCAAATAGAAAAAAACAGCGAGCTCGTCGAAATAA
AAAAGATACATAAAGAGTTTATTTTCCATTTTACGATTTTACGATCCATT
TAACGATTGTATTCAAAGATTTATAAAGAGTTTATTTTCCATTTTACGAT
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAAAG
ATTTACGTATGTCACTTGTGTTTTGAAAAAGAAAATCTTCTGTCACAAAT
GTTTTCTACTTTCCTGTTTTATGTTGTTGTGAATAGAATTACCTTAGTCT
TTTCTGGCTGAACATTATTTACCTTATCGGGGAAAACCTCGTCGGGGAAA
ATTTTCGTCGGGGAAAAATATTCGTCACTTGCTGGTAGTTGGTAAACGCA
TTAAGGCCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGCTGG
TAGTTGGTAAACGCATTAAGGCCGGGGAAAATTTTCGTCACTTGGCCAAA
ATTTCGTCACTTTTCCCCGACGATATTTTCCCCGATAAGGTAAATAATGT
TCAGCCAGAGGTATGAACTTGTAGTAACTATTTTGAATACGGATTTCTCC
GCCCTACTTTCTATCATTAATTTTACCTGTCAACCACTTAACATCTTTTC
TGTTTATTCCTCAAGGTGTTGTCCGACCGCTCAATGTTCGATGGTGTAGA
AGGCGAAGAAGCTGTGCATCAGGTATTGAAAGATGGACTCATTCTGTGCA
AAGTGATCAATATGCTGTACCCAGGCTCCGTACGAAAAGTAAACAAAATT
AAACAACCCTTCATGATGATGGAGAATATCTCGGCTTTCTTGGACGCTTG
TGTAGCCTATGGTGTCCACCGCGGTGATTTATTCCAAACGGTTGATTTGT
ATGAACGTTAAACAAGGTTTCTGTCATCCAGGGTATCTTTGCGCTCGGCC
GTAAAGCGCAGACCAATGGTTACCGAGGCGCCGTTCTGGGTCCTAAAGAA
GCCTCAGAAAACCACCGTGAATTCACGTATGATCAAATGAACGAAGGGTT
TAATATCACAGGCTTACAAATGGGATCCAACAAAGGCGCAAATCAATCGG
GAGTCAATTTTGGGAAGTCTAGGTTTATTATGGACTAACTTTTAATATTG
TAACTTTTCTTTTGTATTCCATTTATTTGGCGCTCCTTTTCATAGTATTC
CAAGGGTAATGTTTTTAAATCTGCAATCGTAATCCAACGATATTTTTTTG
AAATTTTGTGAAAAATGATACATATTATTTTTACCTGAGAATATTCGAAC
AAATTTAATTCCGGGGTTCCATAATATAGTAAGGAAGAATTTGAATTTGA
ATTTTTAGTTAGAGTTTTTATTATTTATGTCTTTATGCTATACGTAACTG
TCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036671-exon-sc0001493-1575043694:36720..36871 | TCONS_00036671-exon-sc0001493-1575043694:36720..36871 | Clytia hemisphaerica | exon |
| TCONS_00036671-exon-sc0001493-1575043694:35118..35856 | TCONS_00036671-exon-sc0001493-1575043694:35118..35856 | Clytia hemisphaerica | exon |
| TCONS_00036671-exon-sc0001493-1510915933:36720..36871 | TCONS_00036671-exon-sc0001493-1510915933:36720..36871 | Clytia hemisphaerica | exon |
| TCONS_00036671-exon-sc0001493-1510915933:35118..35856 | TCONS_00036671-exon-sc0001493-1510915933:35118..35856 | Clytia hemisphaerica | exon |
| TCONS_00036671-exon-sc0001493-1491911889:36720..36871 | TCONS_00036671-exon-sc0001493-1491911889:36720..36871 | Clytia hemisphaerica | exon |
| TCONS_00036671-exon-sc0001493-1491911889:35118..35856 | TCONS_00036671-exon-sc0001493-1491911889:35118..35856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001493 | supercontig | sc0001493:35118..36871 - |
Blast
BLAST of TCONS_00036671 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.051e-20 Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 3
Query: 189 GEEAVHQVLKDGLILCKVINMLYP---GSVRKVNKIKQPFMMMENISAFLDACVAYGVHRGDLFQTVDLYE 392
G E LKDG +LC++IN LYP V+K+ F ME IS FL A YG++ D+FQTVDL+E
Sbjct: 48 GRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWE 118 HSP 2 Score: 47.7506 bits (112), Expect = 3.051e-20 Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 2
Query: 479 PKEASENHREFTYDQMNEGFNITGLQMGSNKGANQSGVN-FGKSR 610
PK++ EN R F+ +Q+ EG N+ GLQMG+N+GA+Q+G+ +G R
Sbjct: 152 PKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPR 196
The following BLAST results are available for this feature:
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