TCONS_00036668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036668
Unique NameTCONS_00036668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036668 ID=TCONS_00036668|Name=TCONS_00036668|organism=Clytia hemisphaerica|type=transcript|length=2475bp
AGCTCCTCAAGTCAAAGAAACCGCTCCCTTCAATCGATAAACTCGAGGAA
TACCTTAGTGTATATGCACCACCTGAATGGCTTTCCAACAAAGATTGCAA
GAAGTTTCCTTATTTCCCTCAAATTGGTGACGAGGTATATTATTTGAAAC
AAGGACATCACCTTTACGTCAAGAAAGTGGTCCAACATAATGAATATGAT
ATTCAAGAAAATCGACAAGCCTACCGAAGATACGATCTCTCTccGGCTGA
ACTGTGCAAATTAATTGGAATTCAATACGATGTGGGACCCCCAACAATGT
GTTCCTTAAAACTAGAATTGATTGGTAAAAGGAAATCAACTGGCAACCGG
CGAACGATAACTGTTCGTTTCCATGATATGCCCAATGTGGATGATTTTCT
GGTTCTGAAACACATCTTTGAGGACTCGCTGAGCCAAGGGTGGTCTGTCG
GTGATCGTTTCCGTTGTATGATTGACGCCACTTGGTATTTTGGAACCATC
ATCGAAGTCAGTCCCCTCAATGAAGAGTTCATTACAAGCTCATTCATGAG
TCTCGTTGTCAGGTGGGATAATGATGACGAGGACCGCGTCAGTCCTTGGG
ATCTGGAACCGATTCCTGATGACACGGATACTTGAGGAGGCACCGATAAC
ATCCGAAGAtaagaaattgtttgaatatatCCCTTCAAGTGAAGACTGGC
ACTACGAATTTCCCGAACACCTTCGTCCACGAGCGCTTGAAGGATTGAAA
GTGTTTTCAGCGTTAAAGGTCGCCGCTCCCTTCGCTTATCCGGTGGATGT
GCACACGTATCCAACTTATTGGAGCACCATCGCTTTCCCGACTGACCTTC
AAACCATCACTGAACGTATAAGCAACAATTTCTACAGGTCATCACTACCC
CAGCATACAAAAAACCGTTCGAGACTTGGCGTTATGTTTTCCCATATCCT
ATCTACACGAAACATCTCTTTTACACCGTCCTCAACCATCAGACACCTTT
GTTCCACAAGATAGAGTTTATTGGGAAGAGAGGCTTCCACGCCGAACACT
CATGGAAGATGGACCGTAATGACGTTTTTAAGGATATGGCTCGGAACCAT
CATTTTTATCCCACTCCTAAATACCACCACTTGGCTCCCGAGGGACCAAT
ACAAGGATTTGCTGAGAGCAAATTATCAGATAATAATAGAGATGACCAGC
CACTTCAATCTTTACCTTTCGAAAATGATGACTGTTTGGTGAATGCTGAT
TATTGCAAGCATGGTACAACTTTTCTCATGGCTGCTAAACttGAGCGCGA
GGGTCTATACTCTCGTAGCCTACTTATCAATCCTGATCTCAAAACAAGCT
ACGTGCCAATTCTTGCAAGCTGTCAGCAGTTTAGTCTCAACAATTAACGT
GCGTATTTACATCGGGCTTGATGAAAATTTCgtcaaaagttgtcattatc
GTTGGGATGTTGAAACACATTTTTTACTAAGTGAAGATTTCAAATCGAGG
AGATTGGATACCAAATATTTTCGTCTTTTTCCTATACATTCAACCTATGC
AAGATCTTGCCGCTTATGAAGTAATGGTAGAAAGTCCCTGGTCTCTAAAG
ATATGGTATCAACAAGGTATTGTTGAGAAAAAGATGTTCGGTGTGCGAGA
ATCTTTTCTTCAAATACGGCAACAACGGCTGTTGAAAGTCTgtttcaata
taatctgcagcggagacaaaaaaaacttttgatagaactcgaatgaaata
gttttttttgcGTTTGTTGAAAATATGATGAGGAGGGGGATATTATAAAA
CATTTATGGATTGCCTTAATGTCGACAAAACAATATTTCGAAAAGTACAT
TAGGTCGACTTCTGCGTTAGGTCGACAAAAAACGTGTCGACCTAACGTTT
GACGCTGATTTAAGAGTTATGTTTAAATCCCGGATCGGTGGCAGAGGTTT
TAAAGCAAGCAAAACTACCAAGTAGCCGCTAACAGCGCTCGGTCGGCTCA
AGATCTGATTGGTTATttgtaatttatgcaaaatattccaatttttggaa
aatattcgcCCCGTGTTTtgcaactttttgaaaaaatatcaatttgcCGC
GGAAAAGGCAAGCACGTTGGGCAatccggctagttcgaaacacgggtcac
gggtcacgggttacggggcacggggtacggggcacggggcacggggtacg
gggcatacaatttacagaccggaaaaaatataacgatatcatgacgtata
attcataacacgtactacataacacatataataatagtactaatactact
agtatagtatgtctgaaacaattatatactaatagtattatcatgaaaat
ttttaaataatatgtcacccacaaattttgacaaagtgatgttgaatgac
aaaaatattgtcaaaatcatgaaatataaggcctctgaaccaatttacag
caaaatgttttttcatactcaatag
Run BLAST on NCBI

protein sequence of TCONS_00036668-protein

>TCONS_00036668-protein ID=TCONS_00036668-protein|Name=TCONS_00036668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
LLKSKKPLPSIDKLEEYLSVYAPPEWLSNKDCKKFPYFPQIGDEVYYLKQ
GHHLYVKKVVQHNEYDIQENRQAYRRYDLSPAELCKLIGIQYDVGPPTMC
SLKLELIGKRKSTGNRRTITVRFHDMPNVDDFLVLKHIFEDSLSQGWSVG
DRFRCMIDATWYFGTIIEVSPLNEEFITSSFMSLVVRWDNDDEDRVSPWD
LEPIPDDTDT
Run BLAST on NCBI

transcript from alignment at sc0001493:12471..19166-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036668 ID=TCONS_00036668|Name=TCONS_00036668|organism=Clytia hemisphaerica|type=transcript|length=6696bp|location=Sequence derived from alignment at sc0001493:12471..19166- (Clytia hemisphaerica)
AGCTCCTCAAGTCAAAGAAACCGCTCCCTTCAATCGATAAACTCGAGGAA
TACCTTAGTGTATATGCACCACCTGAATGGCTTTCCAACAAAGATTGCAA
GAAGTTTCCTTATTTCCCTCAAATTGGTGACGAGGTAATGAAGAAATAAT
CATTATTTGTCGCTCTCAAAGAGTATATCTTTGTTTTTCTCAATAGACCT
TGTATTCAATACACAGGTTGCAAAATGAAAGTCTGAAGACAAATCATGCT
TTTACATCACATTTATTTCTTATTGGCTCAAATTTATTGACACTAATAAA
GTTATCAGCTTTAACTTGTAAAGCAAGGTAACATGGGAATAAAATCACGT
GAACTTTGTATACGTAATCACATGTTTTGATCCTGCATTGATATAATTTT
GCAACCCGTGTATTCTGGCCGTCAACAACGCGATTCGAATATTTTGAGTT
TCAAACGTTCGAAAATATAAGGCAAATTAGAAAACAACATGACTCCAAAA
CTGTACATACTGTACAAATTTTTGAGCAGTTAGACTATCTAGTGCTTTAA
AGGAACATGATATCTGTGTTTCACCACCCTTTCCTGCTTTCTCTTTTCAT
CGAGACACCAACTCTCTTTCTCTCTAACTTTTCATTTATCTTTAGGTATA
TTATTTGAAACAAGGACATCACCTTTACGTCAAGAAAGTGGTCCAACATA
ATGAATATGATATTCAAGAAAATCGACAAGCCTACCGAAGATACGATCTC
TCTGTAAGCCAACAGCTAACTTTCTCAACAGTTTTACATTCTAAATGGCA
CAAATTAAATCGTATCTTTTGAGTTGTTTCTGATTACTTACAATTATCAA
ATGTAGTGTGAACATGTGGCTATAAAGACTCTCCTACAATACTTCTATGC
TCCTACTTTCCTTTGAAACTTCATGAAAAAGATTTCCAAAGATTTTGAGT
TTTTTACCAAAAGCAAATTATTTGGCTATCTTTTCTTTCAGATCTCTTTC
AAATCATCCGTTAACACGTTTCTTGTTTTTTTTTCTCCAGCCGGCTGAAC
TGTGCAAATTAATTGGAATTCAATACGATGTGGGACCCCCAACAATGTGT
TCCTTAAAACTAGGTAGGGTATGAAAGAATATAATCTTTCAATGTCTTTT
TTCTGAAAAGCTTCTTGTTTACTTTTTACCTGGTTGTACTTGATTAAGCA
ACACTGTAATAGAACCATAAAAAGCTAATTGAATAATTTTATAATTAAAT
ACTAATCAGTGGCTCATTATTCAATTTACAGAATTGATTGGTAAAAGGAA
ATCAACTGGCAACCGGCGAACGATAACTGTTCGTTTCCATGATATGCCCA
ATGTGGATGATTTTCTGGTTCTGAAACACATCTTTGAGGACTCGCTGAGC
CAAGGGTGGTCTGTCGGTAAGAAATACATTCTCCATAACATCTAACTCGG
GTCTTTTTAACATGTTTCCTCGCTTTTGGAATCTTTTAGAAAAATGGTAT
ACTGAAGATTCGTCGGCAGCAAAGAGTGACGAAAAAATCACTTGTTGACT
AAATTATTTACCGACGAATTTTTCTCTTTTTCATTATTCCCTTAAATGCC
TTTAGAATGCAAATATTTTACTTAATTTCTGCTAACCATTTTTACCCACA
TAAACAGGTGATCGTTTCCGTTGTATGATTGACGCCACTTGGTATTTTGG
AACCATCATCGAAGTCAGTCCCCTCAATGAAGAGTTCATTACAAGCTCAT
TCATGAGTCTCGTTGTCAGGTACGTATTTGTCAAAAAAGCTCGACACTTT
TTAGGCCTTTACTTTTTATGATACATAAAAAATGGACCAACTTTAATTAG
ATACAATGACTATAATCATATATGATTATATATACCGAATGATAAAAAAA
ATCAAAATGAAATCCGTTTTTACGACATTTCGTTCTCTTTAAAGGACTAG
GTCATCAGTCATTATATCGTTTTTACGATATTTGCATTATTATATATTGA
AAGTTTAAGTTTCATCCTCTTTATAGGTGGGATAATGATGACGAGGACCG
CGTCAGTCCTTGGGATCTGGAACCGATTCCTGATGACACGGATACGTATT
TTCTTTGACTTCATTTTTTCATGAGTTACACACTCTGAGGGTAACTTTCC
GGGACTTACGCTGGAGTTTTTACAAGCTCTTGTTTAATTTGGTTGGTCGT
TAAGTTAATTTCATTACCTTTTCTAAAGAATGCTTCATCTCTATTACTTC
AAATGGTCAATTAGTGAAGTTTCTTATAAAAACTCCAGCTTATCCCAACC
TTCCTCTATAGACTGTAGATTGAGTATATCAAATACTTTCTCTTTTATTT
TCAACTTACAGTTGAGGAGGCACCGATAACATCCGAAGATAAGAAATTGT
TTGAATATATCCCTTCAAGTGAAGACTGGCACTACGAATTTCCCGAACAC
CTTCGTCCACGAGCGCTTGAAGGTAAATTGCATAAAAAAGGGTGAAGCCT
ATGTAGTATACACAATATACAACTCCAGGCTTTTAGTTTTACGCTCAAAA
CAAAGGAAGAAAGATAAGACGAAGCCTAGGTGAAACCCTCCTAAAATGTT
ACTTATTTTTAGATTGAAATTAGCGAACATGCTTTGTGCAATATCTTTAT
TTCTTTTAGTGAACACAAAGCAATAAAAAGCAAGTTTGTGTTTTTTTCCA
CGCTTTATTTAGAAGTAGAAGCAATGACTTTACCTTCACTAAATTTTTGT
ATAACTATATTCTACTCTATTCAGGATTGAAAGTGTTTTCAGCGTTAAAG
GTCGCCGCTCCCTTCGCTTATCCGGTGGATGTGCACACGTATCCAACTTA
TTGGAGCACCATCGCTTTCCCGACTGACCTTCAAACCATCACTGAACGTA
TAAGCAACAATTTCTACAGGTGTGTGAATTTCCTCATAGACCTCCTTTTG
ATTCAAATTTTATTTTTTTAATGCCCAGATTACATCACAGCTTTAGCTAT
TTTGGTATCAGTGATTTCGAACGACAAATTGGTCTTGTGATGGGAAATTG
TTTCATTAGTTTTTTTTTTCAGTTTTGCATAAAGATAAAGGGCAAGGTTC
TCTAAAAAGTGGCTGAAGCCGTTTTTTGCGGAAATTTTTTTTGGTCGTAA
AAATCGGTAATTATAGTAATTATAACTTTTTCATTGATTGTATTACTAAA
GGTCATCACTACCCCAGCATACAAAAAACCGTTCGAGACTTGGCGTTATG
TTTTCCCATATCCTATCTACACGAAACATCTCTTTTACACCGTCCTCAAC
CATCAGACACCTTTGTTCCACAAGATAGAGTTTATTGGGAAGAGAGGCTT
CCACGGTGAGTGTCTTTATGAGACTGTTCATCTAACGTTTACAGACCATC
TAAAAAGAACGACAAATAACTATTAAAAAGCGACAAAAAGAACGACTAAC
CCTAACCCTAACGCTAACTATCAAACCCCAACCTTGGTTAGTGACTACCA
CCCCTAGGTACTTTACGTTATTTAACACCTAGCGGTTTAAAGAATGATAA
ATTACGCATGCGTCTCTATTTGGGTGAGCTGGAAACATTAGATGAACTAA
CTCTTATTACTCTTATTATTAGCTTATAAAATTTGTCGGAAATCTAATAA
ACTTTTAGGTGGCTCCTAGGCTTAGTTGAGTGTTAGATGTGACGTCATAG
CTTTTGTATCATATGGGAGGTATGTTGAAACAATAAAAAAAGTCCAGGAA
CAACTTCAAATTGGCCCATAATCATTTAGCTGATAATGAAAAAAACACTT
AAATTTTGAGCAAAATATTGGAAATACTAAATTATCTTTTTTCACCCGAA
ACAAATCGTTTTATAGAATATTTTCCTTTAAAAAAATTTCTTGTTAAACT
CCCAGAAAGGAATTATTATTTGATGTGCTAAATAATCGATAATGAGCAAA
ATAGCCGATAATTATAACTTTCCAATTGCCCCTATTTTTCTGAATTGGCA
TATTATTGGTCGAACGCACGCTCGAGCATGCGTAGTTAGAAAGAGTTTAT
TATTTCCCATTCTGGAGCTAATCAAGGGATAAAATTTGCAATATACATTA
ATTGAATCATTAAGCCAATCTGAAGAGTTATAAAAGGTTACTATCAATAT
TCTGCTCAAAAATCAAGTTTTTCTTCATTATCGGCTTATTGTCTATACAA
TCTGGGCTAATTTGCTTACTCTGAGCTAAGTAGACGATTTTCCGAGATGA
TGGGCTACTTTGAAGTTGTTCCTAAAGCTTGGTACTCACTTGTGTAGAAA
ATCGCATTTAAGTGCGCCTAAGTGCGTTTATCAGTTAGGCGCACTTAAAC
GCCATTTATGTACTCACTACAAAGTGATTTGAATGAAAGAGAGGGAAAAA
GGAGTTAGGCGCACTTAAACGCGATGAAAAAATCCCCCTCTCTCTTCAAA
TTTCAAAAGAACTGAATAGTGTTTACACGCAGTGTCTTTAATGATCACTC
GATGTGCACCGTGCACAGGCTAATATTGACTGTACACAAACCCAGTATTT
ACGGCTTATTTCAAAATTCGTTGCCGTAGAGGGTCTGTTTTCATTGTCTT
TTCTCATTTGAGATTTTTCAAACTGACCACTGCGAAGGAGTGTTAGTGAG
AGAAGGAAGACGATGAGAAAAGTGTTGCTATTTACAAATCATACTTCATC
TTAGAGGTCTCCGTACGGGAATCTTTTTATCAAACAGATAATGCACACAG
AGTGTACGACGAAGCGATAAACGTGAGATACACTCTGGTACAGAGTAACA
TTGACTATATATAGCAAATATGCTCCTACTTTTTCAGCCGAACACTCATG
GAAGATGGACCGTAATGACGTTTTTAAGGATATGGCTCGGAACCATCATT
TTTATCCCACTCCTAAATACCACCACTTGGCTCCCGAGGGACCAATACAA
GGATTTGCTGAGAGCAAATTATCAGATAATAATAGAGATGACCAGCCACT
TCAATCTTTACCTTTCGAAAATGATGACTGTTTGGTGAATGCTGATTATT
GCAAGCATGGTACAACTTTTCTCATGGCTGCTAAACGTAAGTCGAGTTTT
CTGTTAACCTTAAAAAAGATATGAATGATATTATATGGGCTAATTTATAA
TCGATCTCAAGTCATCTGGGAACCGAACTCAGATCTCTCGCTTGGAAGGC
AAGGACGATCACCACTATTATACACATTCTACCAATTCTTTAACCAACCA
AGTTGCTAAGTAAGAATTCAGCGCTCAAAATAGCCGATTGCATACGATAG
CCTTTGACATAATAAGCATAAATTAGGTATCATATTTTTTGGGGTGGTGA
AAGTAAATTTTTCAGAGAACGAGATAATATACCAAGCAACCAAGCCTGAC
CCGAAAATTGGAGTTACTTATAAAAAGTGTGTAAGCCTCTTTTAATACAC
CGAAGAATAAGGAATATCACTTTTTAGTGAAAAAATTTTCATTTTTAATC
TTTTTGTTTAGTTGAGCGCGAGGGTCTATACTCTCGTAGCCTACTTATCA
ATCCTGATCTCAAAACAAGCTACGTGCCAATTCTTGCAAGCTGTCAGCAG
TTTAGTCTCAACAATTAACGTGCGTATTTACATCGGGCTTGATGAAAATT
TCGTCAAAAGTTGTCATTATCGTTGGGATGTTGAAACACATTTTTTACTA
AGTGAAGATTTCAAATCGAGGAGATTGGATACCAAATATTTTCGTCTTTT
TCCTATACATTCAACCTATGCAAGATCTTGCCGCTTATGAAGTAATGGTA
GAAAGTCCCTGGTCTCTAAAGATATGGTATCAACAAGGTATTGTTGAGAA
AAAGATGTTCGGTGTGCGAGAATCTTTTCTTCAAATACGGCAACAACGGC
TGTTGAAAGTCTGTTTCAATATAATCTGCAGCGGAGACAAAAAAAACTTT
TGATAGAACTCGAATGAAATAGTTTTTTTTGCGTTTGTTGAAAATATGAT
GAGGAGGGGGATATTATAAAACATTTATGGATTGCCTTAATGTCGACAAA
ACAATATTTCGAAAAGTACATTAGGTCGACTTCTGCGTTAGGTCGACAAA
AAACGTGTCGACCTAACGTTTGACGCTGATTTAAGAGTTATGTTTAAATC
CCGGATCGGTGGCAGAGGTTTTAAAGCAAGCAAAACTACCAAGTAGCCGC
TAACAGCGCTCGGTCGGCTCAAGATCTGATTGGTTATTTGTAATTTATGC
AAAATATTCCAATTTTTGGAAAATATTCGCCCCGTGTTTTGCAACTTTTT
GAAAAAATATCAATTTGCCGCGGAAAAGGCAAGCACGTTGGGCAATCCGG
CTAGTTCGAAACACGGGTCACGGGTCACGGGTTACGGGGCACGGGGTACG
GGGCACGGGGCACGGGGTACGGGGCATACAATTTACAGACCGGAAAAAAT
ATAACGATATCATGACGTATAATTCATAACACGTACTACATAACACATAT
AATAATAGTACTAATACTACTAGTATAGTATGTCTGAAACAATTATATAC
TAATAGTATTATCATGAAAATTTTTAAATAATATGTCACCCACAAATTTT
GACAAAGTGATGTTGAATGACAAAAATATTGTCAAAATCATGAAATATAA
GGCCTCTGAACCAATTTACAGCAAAATGTTTTTTCATACTCAATAG

Coding sequence (CDS) from alignment at sc0001493:12471..19166-

>TCONS_00036668 ID=TCONS_00036668|Name=TCONS_00036668|organism=Clytia hemisphaerica|type=CDS|length=4431bp|location=Sequence derived from alignment at sc0001493:12471..19166- (Clytia hemisphaerica)
TTGAGTGGGATAATGATGACGAGGACCGCGTCAGTCCTTGGGATCTGGAA
CCGATTCCTGATGACACGGATACGTGATCGTTTCCGTTGTATGATTGACG
CCACTTGGTATTTTGGAACCATCATCGAAGTCAGTCCCCTCAATGAAGAG
TTCATTACAAGCTCATTCATGAGTCTCGTTGTCAGAATTGATTGGTAAAA
GGAAATCAACTGGCAACCGGCGAACGATAACTGTTCGTTTCCATGATATG
CCCAATGTGGATGATTTTCTGGTTCTGAAACACATCTTTGAGGACTCGCT
GAGCCAAGGGTGGTCTGTCGCCGGCTGAACTGTGCAAATTAATTGGAATT
CAATACGATGTGGGACCCCCAACAATGTGTTCCTTAAAACTAGGTATATT
ATTTGAAACAAGGACATCACCTTTACGTCAAGAAAGTGGTCCAACATAAT
GAATATGATATTCAAGAAAATCGACAAGCCTACCGAAGATACGATCTCTC
TCTCCTCAAGTCAAAGAAACCGCTCCCTTCAATCGATAAACTCGAGGAAT
ACCTTAGTGTATATGCACCACCTGAATGGCTTTCCAACAAAGATTGCAAG
AAGTTTCCTTATTTCCCTCAAATTGGTGACGAGTTGAGTGGGATAATGAT
GACGAGGACCGCGTCAGTCCTTGGGATCTGGAACCGATTCCTGATGACAC
GGATACGTGATCGTTTCCGTTGTATGATTGACGCCACTTGGTATTTTGGA
ACCATCATCGAAGTCAGTCCCCTCAATGAAGAGTTCATTACAAGCTCATT
CATGAGTCTCGTTGTCAGAATTGATTGGTAAAAGGAAATCAACTGGCAAC
CGGCGAACGATAACTGTTCGTTTCCATGATATGCCCAATGTGGATGATTT
TCTGGTTCTGAAACACATCTTTGAGGACTCGCTGAGCCAAGGGTGGTCTG
TCGCCGGCTGAACTGTGCAAATTAATTGGAATTCAATACGATGTGGGACC
CCCAACAATGTGTTCCTTAAAACTAGGTATATTATTTGAAACAAGGACAT
CACCTTTACGTCAAGAAAGTGGTCCAACATAATGAATATGATATTCAAGA
AAATCGACAAGCCTACCGAAGATACGATCTCTCTCTCCTCAAGTCAAAGA
AACCGCTCCCTTCAATCGATAAACTCGAGGAATACCTTAGTGTATATGCA
CCACCTGAATGGCTTTCCAACAAAGATTGCAAGAAGTTTCCTTATTTCCC
TCAAATTGGTGACGAGTTGAGTGGGATAATGATGACGAGGACCGCGTCAG
TCCTTGGGATCTGGAACCGATTCCTGATGACACGGATACGTGATCGTTTC
CGTTGTATGATTGACGCCACTTGGTATTTTGGAACCATCATCGAAGTCAG
TCCCCTCAATGAAGAGTTCATTACAAGCTCATTCATGAGTCTCGTTGTCA
GAATTGATTGGTAAAAGGAAATCAACTGGCAACCGGCGAACGATAACTGT
TCGTTTCCATGATATGCCCAATGTGGATGATTTTCTGGTTCTGAAACACA
TCTTTGAGGACTCGCTGAGCCAAGGGTGGTCTGTCGCCGGCTGAACTGTG
CAAATTAATTGGAATTCAATACGATGTGGGACCCCCAACAATGTGTTCCT
TAAAACTAGGTATATTATTTGAAACAAGGACATCACCTTTACGTCAAGAA
AGTGGTCCAACATAATGAATATGATATTCAAGAAAATCGACAAGCCTACC
GAAGATACGATCTCTCTCTCCTCAAGTCAAAGAAACCGCTCCCTTCAATC
GATAAACTCGAGGAATACCTTAGTGTATATGCACCACCTGAATGGCTTTC
CAACAAAGATTGCAAGAAGTTTCCTTATTTCCCTCAAATTGGTGACGAGT
TGAGTGGGATAATGATGACGAGGACCGCGTCAGTCCTTGGGATCTGGAAC
CGATTCCTGATGACACGGATACGTGATCGTTTCCGTTGTATGATTGACGC
CACTTGGTATTTTGGAACCATCATCGAAGTCAGTCCCCTCAATGAAGAGT
TCATTACAAGCTCATTCATGAGTCTCGTTGTCAGAATTGATTGGTAAAAG
GAAATCAACTGGCAACCGGCGAACGATAACTGTTCGTTTCCATGATATGC
CCAATGTGGATGATTTTCTGGTTCTGAAACACATCTTTGAGGACTCGCTG
AGCCAAGGGTGGTCTGTCGCCGGCTGAACTGTGCAAATTAATTGGAATTC
AATACGATGTGGGACCCCCAACAATGTGTTCCTTAAAACTAGGTATATTA
TTTGAAACAAGGACATCACCTTTACGTCAAGAAAGTGGTCCAACATAATG
AATATGATATTCAAGAAAATCGACAAGCCTACCGAAGATACGATCTCTCT
CTCCTCAAGTCAAAGAAACCGCTCCCTTCAATCGATAAACTCGAGGAATA
CCTTAGTGTATATGCACCACCTGAATGGCTTTCCAACAAAGATTGCAAGA
AGTTTCCTTATTTCCCTCAAATTGGTGACGAGTTGAGTGGGATAATGATG
ACGAGGACCGCGTCAGTCCTTGGGATCTGGAACCGATTCCTGATGACACG
GATACGTGATCGTTTCCGTTGTATGATTGACGCCACTTGGTATTTTGGAA
CCATCATCGAAGTCAGTCCCCTCAATGAAGAGTTCATTACAAGCTCATTC
ATGAGTCTCGTTGTCAGAATTGATTGGTAAAAGGAAATCAACTGGCAACC
GGCGAACGATAACTGTTCGTTTCCATGATATGCCCAATGTGGATGATTTT
CTGGTTCTGAAACACATCTTTGAGGACTCGCTGAGCCAAGGGTGGTCTGT
CGCCGGCTGAACTGTGCAAATTAATTGGAATTCAATACGATGTGGGACCC
CCAACAATGTGTTCCTTAAAACTAGGTATATTATTTGAAACAAGGACATC
ACCTTTACGTCAAGAAAGTGGTCCAACATAATGAATATGATATTCAAGAA
AATCGACAAGCCTACCGAAGATACGATCTCTCTCTCCTCAAGTCAAAGAA
ACCGCTCCCTTCAATCGATAAACTCGAGGAATACCTTAGTGTATATGCAC
CACCTGAATGGCTTTCCAACAAAGATTGCAAGAAGTTTCCTTATTTCCCT
CAAATTGGTGACGAGTTGAGTGGGATAATGATGACGAGGACCGCGTCAGT
CCTTGGGATCTGGAACCGATTCCTGATGACACGGATACGTGATCGTTTCC
GTTGTATGATTGACGCCACTTGGTATTTTGGAACCATCATCGAAGTCAGT
CCCCTCAATGAAGAGTTCATTACAAGCTCATTCATGAGTCTCGTTGTCAG
AATTGATTGGTAAAAGGAAATCAACTGGCAACCGGCGAACGATAACTGTT
CGTTTCCATGATATGCCCAATGTGGATGATTTTCTGGTTCTGAAACACAT
CTTTGAGGACTCGCTGAGCCAAGGGTGGTCTGTCGCCGGCTGAACTGTGC
AAATTAATTGGAATTCAATACGATGTGGGACCCCCAACAATGTGTTCCTT
AAAACTAGGTATATTATTTGAAACAAGGACATCACCTTTACGTCAAGAAA
GTGGTCCAACATAATGAATATGATATTCAAGAAAATCGACAAGCCTACCG
AAGATACGATCTCTCTCTCCTCAAGTCAAAGAAACCGCTCCCTTCAATCG
ATAAACTCGAGGAATACCTTAGTGTATATGCACCACCTGAATGGCTTTCC
AACAAAGATTGCAAGAAGTTTCCTTATTTCCCTCAAATTGGTGACGAGTT
GAGTGGGATAATGATGACGAGGACCGCGTCAGTCCTTGGGATCTGGAACC
GATTCCTGATGACACGGATACGTGATCGTTTCCGTTGTATGATTGACGCC
ACTTGGTATTTTGGAACCATCATCGAAGTCAGTCCCCTCAATGAAGAGTT
CATTACAAGCTCATTCATGAGTCTCGTTGTCAGAATTGATTGGTAAAAGG
AAATCAACTGGCAACCGGCGAACGATAACTGTTCGTTTCCATGATATGCC
CAATGTGGATGATTTTCTGGTTCTGAAACACATCTTTGAGGACTCGCTGA
GCCAAGGGTGGTCTGTCGCCGGCTGAACTGTGCAAATTAATTGGAATTCA
ATACGATGTGGGACCCCCAACAATGTGTTCCTTAAAACTAGGTATATTAT
TTGAAACAAGGACATCACCTTTACGTCAAGAAAGTGGTCCAACATAATGA
ATATGATATTCAAGAAAATCGACAAGCCTACCGAAGATACGATCTCTCTC
TCCTCAAGTCAAAGAAACCGCTCCCTTCAATCGATAAACTCGAGGAATAC
CTTAGTGTATATGCACCACCTGAATGGCTTTCCAACAAAGATTGCAAGAA
GTTTCCTTATTTCCCTCAAATTGGTGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021649XLOC_021649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036668-proteinTCONS_00036668-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036668-exon-sc0001493-1575043694:19033..19166TCONS_00036668-exon-sc0001493-1575043694:19033..19166Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:18414..18521TCONS_00036668-exon-sc0001493-1575043694:18414..18521Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:18054..18126TCONS_00036668-exon-sc0001493-1575043694:18054..18126Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:17751..17885TCONS_00036668-exon-sc0001493-1575043694:17751..17885Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:17398..17509TCONS_00036668-exon-sc0001493-1575043694:17398..17509Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:17072..17140TCONS_00036668-exon-sc0001493-1575043694:17072..17140Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:16695..16805TCONS_00036668-exon-sc0001493-1575043694:16695..16805Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:16248..16392TCONS_00036668-exon-sc0001493-1575043694:16248..16392Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:15812..15965TCONS_00036668-exon-sc0001493-1575043694:15812..15965Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:14081..14329TCONS_00036668-exon-sc0001493-1575043694:14081..14329Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1575043694:12471..13655TCONS_00036668-exon-sc0001493-1575043694:12471..13655Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:19033..19166TCONS_00036668-exon-sc0001493-1510915933:19033..19166Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:18414..18521TCONS_00036668-exon-sc0001493-1510915933:18414..18521Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:18054..18126TCONS_00036668-exon-sc0001493-1510915933:18054..18126Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:17751..17885TCONS_00036668-exon-sc0001493-1510915933:17751..17885Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:17398..17509TCONS_00036668-exon-sc0001493-1510915933:17398..17509Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:17072..17140TCONS_00036668-exon-sc0001493-1510915933:17072..17140Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:16695..16805TCONS_00036668-exon-sc0001493-1510915933:16695..16805Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:16248..16392TCONS_00036668-exon-sc0001493-1510915933:16248..16392Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:15812..15965TCONS_00036668-exon-sc0001493-1510915933:15812..15965Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:14081..14329TCONS_00036668-exon-sc0001493-1510915933:14081..14329Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1510915933:12471..13655TCONS_00036668-exon-sc0001493-1510915933:12471..13655Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:19033..19166TCONS_00036668-exon-sc0001493-1491911889:19033..19166Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:18414..18521TCONS_00036668-exon-sc0001493-1491911889:18414..18521Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:18054..18126TCONS_00036668-exon-sc0001493-1491911889:18054..18126Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:17751..17885TCONS_00036668-exon-sc0001493-1491911889:17751..17885Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:17398..17509TCONS_00036668-exon-sc0001493-1491911889:17398..17509Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:17072..17140TCONS_00036668-exon-sc0001493-1491911889:17072..17140Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:16695..16805TCONS_00036668-exon-sc0001493-1491911889:16695..16805Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:16248..16392TCONS_00036668-exon-sc0001493-1491911889:16248..16392Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:15812..15965TCONS_00036668-exon-sc0001493-1491911889:15812..15965Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:14081..14329TCONS_00036668-exon-sc0001493-1491911889:14081..14329Clytia hemisphaericaexon
TCONS_00036668-exon-sc0001493-1491911889:12471..13655TCONS_00036668-exon-sc0001493-1491911889:12471..13655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001493supercontigsc0001493:12471..19166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.612789	0.614908	0.644762	0.31459	4.97994e-09	0	0	0	0.349815	0.795936	0.245442	0	0	0.324314	0.44761	0.53856	0.562626	0.575325	0.572356	0.849687	0.505419	0.767238	0.469303	0.665262	0.087393	0.291785	0.426151	0	0.547187	0.230665
Blast
[Close]
BLAST of TCONS_00036668 vs. Swiss-Prot (Human)
Match: BRWD1 (Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4)

HSP 1 Score: 188.348 bits (477), Expect = 1.887e-60
Identity = 79/190 (41.58%), Postives = 127/190 (66.84%), Query Frame = 3 
Query:   48 EYLSVYAPPEWLSNKDCKKFPYFPQIGDEVYYLKQGHHLYVKKVVQHNEYDIQENRQAYRRYDLSPAELCKLIGIQYDVGPPTMCSLKLELIGKRKSTGNRRTITVRFHDMPNVDDFLVLKHIFEDSLSQGWSVGDRFRCMIDATWYFGTIIEVSPLNEEFITSSFMSLVVRWDNDDEDRVSPWDLEPIP 617
            E+L  + PP W+++   +K P+ PQ+GDEV Y +QGH  Y++ V ++N Y++  N++ +R+ DL   EL K++GI+Y+VGPPT+C LKL  I         ++ ++R+HDMP+V DFLVL+  ++++  + W   DRFR +ID  W+FGT++   P   ++  S F   +VRWDN + +++SPWD+EPIP
Sbjct:  936 EHLYEFHPPVWITDTTLRKSPFVPQMGDEVIYFRQGHEAYIEAVRRNNIYELNPNKEPWRKMDLRDQELVKIVGIRYEVGPPTLCCLKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFYDEARQRNWQSCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTEIEKLSPWDMEPIP 1125

HSP 2 Score: 64.6994 bits (156), Expect = 1.887e-60
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:  646 ITSEDKKLFEYIPSSEDWHYEFPEHLRPRALEGLKVFSALKVAAPFAYPVDVHTYPTYWSTIAFPTDLQTITERISNNFYR 888
            +T+++ +   Y P + +W  +  +    R + G+     L +AA FA PVD+ TYP Y + +A+PTDL TI  R+ N FYR
Sbjct: 1140 VTTDELEKLLYKPQAGEWGQKSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYR 1220
The following BLAST results are available for this feature:
BLAST of TCONS_00036668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRWD11.887e-6041.58Bromodomain and WD repeat-containing protein 1 OS=... [more]
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