TCONS_00036666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036666
Unique NameTCONS_00036666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036666 ID=TCONS_00036666|Name=TCONS_00036666|organism=Clytia hemisphaerica|type=transcript|length=455bp
CTGCTCATTTGCTTGTAAGATTTTTGATGGATTGTCGGTGTATATCACGT
TTCCTTCAGGACTTCTATCATTGTTTCTTCCTAATAACAATCTATTTGGA
GTTATAAAGTCCATGCATTCGAAATCACCAACGATGTTACCAAGGGCGAG
TGGTAGGTTATTGATCGTATTTGCCATTGTCGCAGACAACGTTTCCCACT
GTAGGAGAGACAGTTTTTCCTTGTGAGCGATCTTCTCGATAGATGCATTG
ATTTCACGTATCTTCCTTTCCACTTTCCCATGCATATAGTGTCCCTGCAC
AGGACAGACTTGATATTCGACTTTGTGAAGCTTCGTCAGGTTTGATTGGA
CATCTTGAAGGTTGAGGTTCATCTCCTTGCATGATTTAACCAACTGACTC
CCTTCATCACAAAGGAGCTTTTTTGGAAATCCTCTGTCACATGCAAATCT
TGTGA
Run BLAST on NCBI

protein sequence of TCONS_00036666-protein

>TCONS_00036666-protein ID=TCONS_00036666-protein|Name=TCONS_00036666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
TRFACDRGFPKKLLCDEGSQLVKSCKEMNLNLQDVQSNLTKLHKVEYQVC
PVQGHYMHGKVERKIREINASIEKIAHKEKLSLLQWETLSATMANTINNL
PLALGNIVGDFECMDFITPNRLLLGRNNDRSPEGNVIYTDNPSKILQANE
Q
Run BLAST on NCBI

transcript from alignment at sc0001492:44580..45034

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036666 ID=TCONS_00036666|Name=TCONS_00036666|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at sc0001492:44580..45034 (Clytia hemisphaerica)
TCACAAGATTTGCATGTGACAGAGGATTTCCAAAAAAGCTCCTTTGTGAT
GAAGGGAGTCAGTTGGTTAAATCATGCAAGGAGATGAACCTCAACCTTCA
AGATGTCCAATCAAACCTGACGAAGCTTCACAAAGTCGAATATCAAGTCT
GTCCTGTGCAGGGACACTATATGCATGGGAAAGTGGAAAGGAAGATACGT
GAAATCAATGCATCTATCGAGAAGATCGCTCACAAGGAAAAACTGTCTCT
CCTACAGTGGGAAACGTTGTCTGCGACAATGGCAAATACGATCAATAACC
TACCACTCGCCCTTGGTAACATCGTTGGTGATTTCGAATGCATGGACTTT
ATAACTCCAAATAGATTGTTATTAGGAAGAAACAATGATAGAAGTCCTGA
AGGAAACGTGATATACACCGACAATCCATCAAAAATCTTACAAGCAAATG
AGCAG

Coding sequence (CDS) from alignment at sc0001492:44580..45034

>TCONS_00036666 ID=TCONS_00036666|Name=TCONS_00036666|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0001492:44580..45034 (Clytia hemisphaerica)
ACAAGATTTGCATGTGACAGAGGATTTCCAAAAAAGCTCCTTTGTGATGA
AGGGAGTCAGTTGGTTAAATCATGCAAGGAGATGAACCTCAACCTTCAAG
ATGTCCAATCAAACCTGACGAAGCTTCACAAAGTCGAATATCAAGTCTGT
CCTGTGCAGGGACACTATATGCATGGGAAAGTGGAAAGGAAGATACGTGA
AATCAATGCATCTATCGAGAAGATCGCTCACAAGGAAAAACTGTCTCTCC
TACAGTGGGAAACGTTGTCTGCGACAATGGCAAATACGATCAATAACCTA
CCACTCGCCCTTGGTAACATCGTTGGTGATTTCGAATGCATGGACTTTAT
AACTCCAAATAGATTGTTATTAGGAAGAAACAATGATAGAAGTCCTGAAG
GAAACGTGATATACACCGACAATCCATCAAAAATCTTACAAGCAAATGAG
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021647XLOC_021647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036666-exon-sc0001492-1491911889:44580..45034TCONS_00036666-exon-sc0001492-1491911889:44580..45034Clytia hemisphaericaexon
TCONS_00036666-exon-sc0001492-1510915933:44580..45034TCONS_00036666-exon-sc0001492-1510915933:44580..45034Clytia hemisphaericaexon
TCONS_00036666-exon-sc0001492-1575043694:44580..45034TCONS_00036666-exon-sc0001492-1575043694:44580..45034Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036666-proteinTCONS_00036666-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001492supercontigsc0001492:44580..45034 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288437	0.140636	0.38637	0.479266	1.01414	1.06263	0.370831	0	0.149196	0	0.146113	0.480243	0.19183	0	0.163784	0	0	0	0	0	0.139439	0	0.165358	0	0	0	0.197752	0.422093	0.160071	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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