TCONS_00036658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036658
Unique NameTCONS_00036658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036658 ID=TCONS_00036658|Name=TCONS_00036658|organism=Clytia hemisphaerica|type=transcript|length=576bp
tcttcgcttgagaaaatgattgacagattgaagttttcacccgcgcagga
gttcgcggagcgttctcggctcaatccttggaccgcgctaaaaatggtag
actcaaAGGTACTCTAGGTACTCTAGCTCAAAGGTACTCTAGGAAGAGCC
CCCAAAGCATGTTTGATGTCaatgagaaagagaaaaagcGCCAATATAAC
GAAAGAATTATTCGTGTCGAAGGTGGCTCCTTTACCCCATTGATTTTTAC
CACAAATGGGGGGTCAGGAAGAGAGGCTCAGATCTTTATCAAGGCTTTAG
CCTTACTTATGTCTGAGAAAAGGGATGAACTTCTTTCAATGACACTGAAC
TTTATCAGAACAAAACTTTCCTTTGCACTGATTCGATCTACTGTGCTTTG
TGTCAGAGGAAGTAAGACTCCAAAGAAAGCACCTGACCAATCAATGGACA
TTCAAATGACAGAAGCTATAGgctatatttgattttttttttttttctag
ataTTTTCTTGTAAAATTTCACATCATATAACTTTTCTATACTGTGCTTT
GTTAGTATCACATTTTTCTCTATTCC
Run BLAST on NCBI

protein sequence of TCONS_00036658-protein

>TCONS_00036658-protein ID=TCONS_00036658-protein|Name=TCONS_00036658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MFDVNEKEKKRQYNERIIRVEGGSFTPLIFTTNGGSGREAQIFIKALALL
MSEKRDELLSMTLNFIRTKLSFALIRSTVLCVRGSKTPKKAPDQSMDIQM
TEAIGYI
Run BLAST on NCBI

transcript from alignment at sc0001491:7959..8534

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036658 ID=TCONS_00036658|Name=TCONS_00036658|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0001491:7959..8534 (Clytia hemisphaerica)
GGAATAGAGAAAAATGTGATACTAACAAAGCACAGTATAGAAAAGTTATA
TGATGTGAAATTTTACAAGAAAAtatctagaaaaaaaaaaaaaatcaaat
atagcCTATAGCTTCTGTCATTTGAATGTCCATTGATTGGTCAGGTGCTT
TCTTTGGAGTCTTACTTCCTCTGACACAAAGCACAGTAGATCGAATCAGT
GCAAAGGAAAGTTTTGTTCTGATAAAGTTCAGTGTCATTGAAAGAAGTTC
ATCCCTTTTCTCAGACATAAGTAAGGCTAAAGCCTTGATAAAGATCTGAG
CCTCTCTTCCTGACCCCCCATTTGTGGTAAAAATCAATGGGGTAAAGGAG
CCACCTTCGACACGAATAATTCTTTCGTTATATTGGCgctttttctcttt
ctcattGACATCAAACATGCTTTGGGGGCTCTTCCTAGAGTACCTTTGAG
CTAGAGTACCTAGAGTACCTttgagtctaccatttttagcgcggtccaag
gattgagccgagaacgctccgcgaactcctgcgcgggtgaaaacttcaat
ctgtcaatcattttctcaagcgaaga

Coding sequence (CDS) from alignment at sc0001491:7959..8534

>TCONS_00036658 ID=TCONS_00036658|Name=TCONS_00036658|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0001491:7959..8534 (Clytia hemisphaerica)
tcaaatatagcCTATAGCTTCTGTCATTTGAATGTCCATTGATTGGTCAG
GTGCTTTCTTTGGAGTCTTACTTCCTCTGACACAAAGCACAGTAGATCGA
ATCAGTGCAAAGGAAAGTTTTGTTCTGATAAAGTTCAGTGTCATTGAAAG
AAGTTCATCCCTTTTCTCAGACATAAGTAAGGCTAAAGCCTTGATAAAGA
TCTGAGCCTCTCTTCCTGACCCCCCATTTGTGGTAAAAATCAATGGGGTA
AAGGAGCCACCTTCGACACGAATAATTCTTTCGTTATATTGGCgcttttt
ctctttctcattGACATCAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021640XLOC_021640Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036658-proteinTCONS_00036658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036658-exon-sc0001491-1491911889:7959..8534TCONS_00036658-exon-sc0001491-1491911889:7959..8534Clytia hemisphaericaexon
TCONS_00036658-exon-sc0001491-1510915933:7959..8534TCONS_00036658-exon-sc0001491-1510915933:7959..8534Clytia hemisphaericaexon
TCONS_00036658-exon-sc0001491-1575043694:7959..8534TCONS_00036658-exon-sc0001491-1575043694:7959..8534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001491supercontigsc0001491:7959..8534 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.504056	0.0970962	0.929562	1.23728	0.785874	1.13858	1.26203	0.351953	0.738716	0.830053	0.997312	0.996554	2.24234	2.05591	1.37748	1.92411	1.90744	1.21483	1.60848	2.09953	1.04017	0.84015	0.226163	0.202353	0.420914	1.22538	0.407316	0.56952	0.446757	0.112516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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