TCONS_00036656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036656
Unique NameTCONS_00036656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036656 ID=TCONS_00036656|Name=TCONS_00036656|organism=Clytia hemisphaerica|type=transcript|length=641bp
CAGTGAAAAAGTGGCAAAGaagttgaaactttttataCTTCCAGCACCTG
CAAAAACCGATACACTTGCAGACCGTTCTCAGTCATGCCCAGTCATTGGT
TATCATTAGTTATTGAGACGACGTTTTTGTTAATGGGACGCTTTACACCG
GACAAGTTTTTTTAGTACTGAAAAACTTGTTCGTCGAAATGGTTATCGGT
AAAGCCTTTATGAAAAAGCACAAATCAGTCACTCTGTATTTTTATTTGGA
GGTTCTGAATCAGCTCTTCAGCTTCCTTCCAAAGACACGGTCAGTTGTTA
TGAACATTGAACCACCAACTCTCTTCGCCAACATGCCAGCTAACGCTAAG
CCAATCGCATGCAAGTCCAGAAAGTATACAATGCTCAAGAAACCGAACGT
TTGCTATAGGAAGGTATAATAGAACCAAGTACTTCACCTTGGAGAGCCCA
AAAAGtggataaaatcaaaataacaaacCTGAAATCAAGAtcgaaagaga
aagaaaaatggacaaTGACGGATACATCTTTTCATCCAAACGCCGAGGTC
AAGATGTCCTTATCAGAGGCGTGTACTGAAACGGACGGAGGACAAGTCAA
GAGGAGAATGTTCGGAACGGAAATGAAAGTGACATTTCTTA
Run BLAST on NCBI

transcript from alignment at sc0001491:1376..2016

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036656 ID=TCONS_00036656|Name=TCONS_00036656|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0001491:1376..2016 (Clytia hemisphaerica)
TAAGAAATGTCACTTTCATTTCCGTTCCGAACATTCTCCTCTTGACTTGT
CCTCCGTCCGTTTCAGTACACGCCTCTGATAAGGACATCTTGACCTCGGC
GTTTGGATGAAAAGATGTATCCGTCAttgtccatttttctttctctttcg
aTCTTGATTTCAGgtttgttattttgattttatccaCTTTTTGGGCTCTC
CAAGGTGAAGTACTTGGTTCTATTATACCTTCCTATAGCAAACGTTCGGT
TTCTTGAGCATTGTATACTTTCTGGACTTGCATGCGATTGGCTTAGCGTT
AGCTGGCATGTTGGCGAAGAGAGTTGGTGGTTCAATGTTCATAACAACTG
ACCGTGTCTTTGGAAGGAAGCTGAAGAGCTGATTCAGAACCTCCAAATAA
AAATACAGAGTGACTGATTTGTGCTTTTTCATAAAGGCTTTACCGATAAC
CATTTCGACGAACAAGTTTTTCAGTACTAAAAAAACTTGTCCGGTGTAAA
GCGTCCCATTAACAAAAACGTCGTCTCAATAACTAATGATAACCAATGAC
TGGGCATGACTGAGAACGGTCTGCAAGTGTATCGGTTTTTGCAGGTGCTG
GAAGtataaaaagtttcaacttCTTTGCCACTTTTTCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021638XLOC_021638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036656-exon-sc0001491-1491911889:1376..2016TCONS_00036656-exon-sc0001491-1491911889:1376..2016Clytia hemisphaericaexon
TCONS_00036656-exon-sc0001491-1510915933:1376..2016TCONS_00036656-exon-sc0001491-1510915933:1376..2016Clytia hemisphaericaexon
TCONS_00036656-exon-sc0001491-1575043694:1376..2016TCONS_00036656-exon-sc0001491-1575043694:1376..2016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001491supercontigsc0001491:1376..2016 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.21824	0.525094	0.316752	1.38385	0.346023	0.342885	0.083203	0.218778	0.436947	0.567217	0.233165	0.450399	0.863107	2.59078	0.1746	0.182706	0	0.116189	0.564973	1.1985	0.352693	0.472156	3.71609	2.64394	0.0911517	0.185738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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