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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036654 ID=TCONS_00036654|Name=TCONS_00036654|organism=Clytia hemisphaerica|type=transcript|length=417bp
TTACCATCGATCATTTAGGTTTAAATGGAGGTCTTAAATTAAAAAGTTGA
TTAAATACGATAAATAATTCGATCGACTAATCCAAGGCTCCACCCATAAA
TACAATTTCTTCGAAATGGATAGTCTGTTTCAAATGTAGTTTACACCATT
TACTGAGTATAAGATCAATTCATTTCAAATCTTATTGCAACACTATCATT
CATAGTTATGTCCTTGAATAAGCCATGTTCAAATGCTGACGGGTTTCCCA
CATAGAAAGATGTACACGCAAGTGGTCTTTTAAATGAATCTTTCCATCTA
CCTCCTTCATCTGTACTTCTTGTCACAGTTTGAGCAATTTCAACTCCATT
AAAGATTAGAGTAAAAATCAATGATTTCCAAGGCATTGGCCATTCTAAAG
TATCGTCATGAGGACCC Run BLAST on NCBI transcript from alignment at sc0001491:18823..27898- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036654 ID=TCONS_00036654|Name=TCONS_00036654|organism=Clytia hemisphaerica|type=transcript|length=9076bp|location=Sequence derived from alignment at sc0001491:18823..27898- (Clytia hemisphaerica)
TTACCATCGATCATTTAGGTTTAAATGGAGGTCTTAAATTAAAAAGTTGA
TTAAATACGATAAATAATTCGATCGACTAATCCAAGGCTCCACCCATAAA
TACAATTTCTTCGAAATGGATAGTCTGTTTCAAATGTAGTTTACACCATT
TACTGAGTATAAGATCAATTCATTTCAAATCTTATTGCAACACTATCATT
CATAGTTATGTCCTTGAATAAGCCATGTTCAAATGCTGACGGGTTTCCCA
CATAGAAAGATGTACACGCAAGTGGTCTTTTAAATGAATCTTTCCATCTA
CCTCCTTCATCTGTACTTCTTGTCACAGTTTGAGCAATTTCAACTCCATT
AAAGATTAGAGTAAAAATCAATGATTTCCAAGGCATTGGCCAATCCAAAG
TATCGTCATGACGTCCCACCTCATTCTTAAAGAAAACTGACACATAAGTG
TTTTTGTTGACTAGATTGGTCTCGCGAAACCCAGAGAAAATACATCCTTT
ATAACCATGCTTAGTAAAAAAATATGGTGAATCATCATATCTCCATTTCA
TAGCAGCGTCAAATTTCTCTTTGAATTTTTCGATAGTCCATGTATAGTTA
CATAGTGATGGTGCGCAGATAGCCAAATTTAATTCCTCTTTTACAGCTCT
ACCCGATGCTTTAATAAGATCGTCTTTTTGATTCCGTTCTTTGACTTTTT
CAACTTCCTGCTTAGTCAGCATAAATTCTTCTTTCAAATCAAAAATAGAT
TTATCGGTTGCCTTCAACTTCGTCAGCATTTTTTTCTCCAACGACTTGAT
GGTGGTTTGGTTCATCTGAACTTTAATTTCCATTGCGTCGACCCCTTTCA
ATTTCTCTTCTGCAATTTTTAACCGCTCCGCTAATGCTCGAATCATTTTG
TCTTTTGCTTTCAAGTCTCCATCAAGATCCAACCGGACTTTTCCGATTTC
GTTATCCCTCATTTTCAACTGTTCAGCAAATTTATTTTTCATTTCTTGAG
CTTCGAGATCTTTCGCTGTCAACTTTTGATCGAATTCTTTTTTTATTTTG
AAAATCTCACTTTTCATTTCAAGAGACAAATGCATGTTGGCCGATTGTGC
CATATGATTGTCCAGTTGTAATTTGGTGCCCTGAAACCCAACAATTTAGA
AACTGCGTTAGCTTTTCAAATAATATATCTGGCTTATTACCTATTATACT
TTACTGTACTTACTTAGATGACAAAAATCCGGACAGTGCTGCCGTACAGC
TACTTTGAAAAATAAGACAAAATAAAGATACTGTAGCACTTTATCCACGA
AAGACTCCTTGCAGAGTCTTTTTTAGTTAGCCAGCTTAGTTCGTCTCTCG
ATTTATTCGGAAATTTTTATTTCATTCCTTTGGAAATTGAAAAAAGCAGC
TTCAACATAAGAAAAATGTACCTTAAAGTAGCATCCTAAGTCTTTGTATT
CACAAGAGGAGACCATTGGACATACGGTATCCACGTGATTTGTTATCTAA
AGAAGAACCCATAAGCTAAAATAATATGTCTACAATTGTAGAATAGTCGA
ACACGCGCACTGGGCTCAACTTCAGTGCCTTCATAGGCCCAATTGTAGAA
CCCCAGATATTCAGCCAAGGAACAAGTGTGCAAAATTTCAGTCAAAATGA
ACAATTTTTGAAGTCTCCAGGCTGCCTCAAAGTTTTAGCCTCGTTTTGGC
GAAAAACTCATCCCCAGGCCCCAAAAATCAAAATTTTCAAAAAATGAAAA
AAGTACCCCAGATATTCACCCAAGGAACAAGTGTGCCAAATTTCAGCTAA
ATCCAAGCATTTTTGAGTCTCAAGGCTGCCCTAAAGTTTTTGTGACAGAC
AGACAGACACACACAGACATTGTCAGATTGTAGCTCAACTGAAGTTGAGA
ATCATAAGATGAGATTTCCACTGTCGTTTTTGAACATTTGCATAAGAGGT
CACCTTTAAAGATTCGTAGTAAAACTCCCTCTTAGTAAGATATTTCAAGT
TTTTCAACATCAGTTCTTTCGGGCCTCTTGAAAATCCGAGTTAACAAACT
CAAAAAAACATACACCAAAAAGACTGGGTTAAAAGATTCCGGAAAACAAA
TTTTCATAACTCATATTTTCGTAACAACCGAGTTAACTAACTCGAACGAT
TAAGGTAACCACAAACAAATCGAGTTATTATCATAAATCAAGTTATCTTC
TAAAANACTCATTCTTTCATAACAACCGAGTTAACTAACTCGAACGATTA
AGGTAACCACAAACAAATCGAGTTATTATCATAAATCAAGTTATGTTCTA
AAATGACGTCATTTCTCTCAAGTTATGACGTCACAAATGACTAGGGTTTG
GCGAACTCTGGTTTTCAGGGCTTCACAAAAAGTTATCCCGAGTGTTTTCA
TGGTTTGTATTCACATATCAAGGTCTGAAGAACCCGAGTTAAGAAAACGT
AATGACGCCATAACGTTTTTTTAAGGTCCTTTAACTCGTGTTTTCCGGGT
CTCTCTGATATCTTACAAATGATAACAAATCGTTCTTACGTTTTTACGGA
GCACGAATTCTCCACAATCTAATTCACAAGGAACGGTCACAAAACCGCAA
GTTTTCAGGTGAACCTAAAACGATGATAAATGCTTGTTATTATCTATTGC
AAAAGAAATTGACTCCCTAAATAAGAAAATTGGCTTATAGCCTGAGTACG
GAAGGGGGTTACTACCTCAGTTATAGATCAACCTCCTCTACCTTTAGACT
CTTCCCCTTTCTAAAATTTTATTATAAATCAAAATCATTATGAATATCAT
CATGAACATATAAACAACTGGACGTCTATCTTTTATTGTCTCTTTGAAGC
GAGCTTCGTTGCCGCCTGTATTTCAAAATTGGTATGAAAAAATCCGACAA
TATTCCGTCATAATTTGATTTCTTTGAATTATAAGTTTGCAATATATTTT
ATTGACATTTTCAACCCTAAAATGCAGAAATTCAACTGCGTGTATACTTT
TGAATCCCTTTTGTCACTCAAATAATTTTTTTTATGACTTGAAAAAAATA
GCTTGCCAAAGTCGAGAGCCTGTTTCATAAGAAAATCGAAATTAGAATGT
AACACTCTCTAAAATTATTAGTAGGAGTGGGCTATACAGGGTGATTTTTC
AAAAAATTTCAAACTAAATTTTTTAAGGTCTAAATTATAAGTGTAGACAG
GATCAAATAGAATTTTTGAACAAAAATGAAGAAAAAAAATGTGGGAAGCC
TTTTTGTAGACTGAGGTTTGTGCCCTCAAATCAATCTTTTTCCATCTACC
CAACTACCCAAATTATGTTGGAAATGAGACACACAGTGATTGAATTCCGC
TCAAATTTGGCACATTCACTTCTCAGGGACAGAAATAAAGTATATCAAAA
CATTTATTCGAGAAATATAATTTTTGACATTTTGGGCGTAGCCCAAAGGC
TTTACGCAGGCAAAAAAGAGGAAGCTTGACTATAAAGGCGAGAAAACATT
CTTTCCTGCTTAAATTTGGCACATTACCTCTTCAGGTGAAGATTTGTCAG
TGTAAATTGTGAAATCTTAAAATTTTTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAAAGTGTACTGCAGAAAGTTATGAA
AAATGGTTTCTAGAATTTAATGAATTATACCGTCAAGTTACACAACATGC
ACACTCTCGTCACAACTTGCACAATCATGATTCATCTAGTCTTCATTTAA
CATTGTTTTAAAGTTTAAAAAACACTGCCAGTGCTTGGCACAGAAGAGAG
GACTCCCAGTTGAAATTAATTACTACTCCGCTGCCCTGTTGAATTTATGT
ATTATGGTTGTGTGTTTATTCCGCCAAGGCGGTAAAGCGATTGCCCAAAT
TCATAGACCAATTAAAAGGGAGTTTAAAGCAAAATGGGGGAAAATGAGCT
TCCCTGCATAGTTATGAATCTTAAGTTTTGCTTTCGATTATCATTTGCGA
CCAGCAAAGTCTTCAAGATGGTTGTGTGCATGTTGTGTAACTTGACGGTA
CTAAACTACAANCATCTCTTACATCTGTTAACCCACTTATTAAAGCTATC
TAGCTAAGCTCTATTGGCTGACCTTCCAGCCTCGGCTGGTTTATTGTTAT
TCAAGGAGGACTTTTACCAAATTGCAGCAAAATTGAATGATTTTTAAGGT
TTCCAGGTCAAATTGGGGATTTTTTTGTCATACTTTATATGAGTCTAATA
GGGGGCCAGAAAAGGGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTATATTTAAAATATCTCAAAAATTCTTTTTGATCCT
GCCTAGATATGCCATACGGAGCTAAAGAAAATTTAGTTTGACATGATTTG
ACGAAAAAAATAAAAATGACCCTGTATAGCCCACTCCTATTAGTAGACAC
TTTTAAGTCAAAATTTAGAAATATTAGTCGGAGTTTTGACAAGCTGACGA
TGATTTTGCCTCTGTTATCTTTGTTATCATGATATAGATAAACGACTTGA
GAAGAGTAGAACAACAGAGACTTTTGTCGAAGTTTTGACGTTGTTAGCAA
GGTATTCCCAAGCGGTATATCATCAAAATCTATTTTTCATTTTATGCTTT
TAACGAGGCGGCAACGAAGCTAACAGCCTTTTCTACAAAAAGAAAAAGGA
GATGGATGTCCAGTCGTTTATATGTTCATGATATCATCAAGTAGATTCCT
CCCCCCTCCAAGGTGATATGGTTGAACTACATAAATTGGCCCTAATGAGA
GCCTAACTTAAGTATCCAATTAAGTAAAAATTTGCGTAAAGTGGAGGGTC
TTTATGATTTTAACACAGTGCCAGATCCTAAAATTAGAAATTTGCTGTAG
TTTTTGAACATTTATTCTAGAACAGCCATCCCCACTTTTGAAAACTTCTT
CTTTCTGCGTACAGATGATATCAAATGAAATAATCCTACAAACCTCTTTC
TCTCTGAGCTCATTTTGCCACGTACATCCATCAACAAAATTCGGACATCG
AATCTTCAGACTGAGTATTTCTCTTTTTTTCCCCACATCAGGAAAAACTT
GAATCTCTTGCCAATCTTTGGGGCATTTTCCCGGACTAGAATAAAATGAT
TATCATGAAAATATTATACTGTGATCTTCTTTTATACAGGCACACCGCAT
AATGCATTTTTGCAAGAATGGTGCCAAATAAAAAACTCTCCAAGGCAATT
AATTTGAGTGCAGTAGATTCTTTCCTTAACGAAAACTTTTTATAGAACAC
AAGAAAATGACGACTAACAAAAGTATAGAAAATTTCGACGTGACTACTGT
TCACACTTACTTCTGAAGATGAAATTCCCCAATACATTTTTCACAAAAGC
GATGCCCGCATTTCACGGCTTGTACTGGTTCTCGCAAAACCAAAAGACAT
ATTGCACAAGTGATATCGTCTCTATTGATTTCTTTGGCGTTCTGTACAGA
ATTTTCTTCTGTTGCTTGAGATACTTCAGATTTTTCGTCTTCCCAGATGA
ACGTCACATCAAAACCATACTCTTCTGGTTTACAAGCTGCCATATTTTTT
AAAAATCTAACTTTTGGCGACCAAGATGGAACTTTCACAAATAGTTATAG
GATCAGATTAAAAAGAATTTTCCGTTTCTCTTCCCTCTCCAAAACTATAG
CTTGCTACAGTAAGCTCACNTTGTTTAAAAATCTAACTTTCAGCAACCAA
GATCGAACTTTTCACAAATAGTTACAGGATTAGATTAAAATAATTTTCCG
TTTCTCGTCCCTCTCCAAAACTATAGCATGCTACAGTAAGCTCATATCTC
GATACTATCACTTTCAAAATACCTCTTGAACAAAAAGATCTATCAAAAAA
CAGAATATAGACAAATCAATGGCCTTGAAATTTAAAGATTTAAAGACAGC
ATTCCTTAGAAAAATGAAACTACTTAGGTAAGAGTGATAGTTCCTTTATA
ATAACACTATAGAACCTTTCGCCCTAAAAACACACGTTTTTCTCGAGAAT
CACCCCATAATACGCTATCATTTAGATCAGCAATTTGAGCATAAAATCGA
AAAATCAGGAAGGTTATTCATTTTTTGTGAATTGTTGATTCACTGTTCTT
AGTGACAGTTTCAAGAAATTATTCAAATAAAATATTGTAATTCAATCTTT
TCATATGAGCATTAATGATTGCATTCCAATTGGTCCATATTCATTCATTT
ACTTTATTTATTCATAGAATTATTAATTAATTATCTACGGAATAATTTTA
GAATTTACAATATATTGTCTAATCTTCATCTGCCGCCCAGTTGTCAGTAG
ATTTGGACAGACTGGACGTTGTTTTGGTCTTTGTTCGAGGTTTTCGAACT
AAATTTGAAAATTTTCCAACGCCCCCGTATTTCTAATCTTTATAAACTCT
TCATACATTTACTCTAAAAAGAAGACGAAAACGTAATATATAACGACATT
TACACCAATTAAGGACTAGAAGATTAATTCATTCCAAATCTTATTGCAAC
ACTATCATTCATAGTTATGTTCTTGAATAAGCCGTGCTCAAATGCTGACG
GATTTCCAAGCCGGTAAGCACAGTAACCAACTGGTCTTTCAAATGAATCT
TTCCATCTACCTCCTTCATCTTTACTTCTTCTCACAGTTTGAGCAATTTC
AACTCCATTAAATATCAAAGTGAAAATCAATGATTTCCAAGGCATTGGCC
ATTCTAAAGTATCGTCATGAGGACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036654-exon-sc0001491-1575043694:27517..27898 | TCONS_00036654-exon-sc0001491-1575043694:27517..27898 | Clytia hemisphaerica | exon |
| TCONS_00036654-exon-sc0001491-1575043694:18823..18857 | TCONS_00036654-exon-sc0001491-1575043694:18823..18857 | Clytia hemisphaerica | exon |
| TCONS_00036654-exon-sc0001491-1510915933:27517..27898 | TCONS_00036654-exon-sc0001491-1510915933:27517..27898 | Clytia hemisphaerica | exon |
| TCONS_00036654-exon-sc0001491-1510915933:18823..18857 | TCONS_00036654-exon-sc0001491-1510915933:18823..18857 | Clytia hemisphaerica | exon |
| TCONS_00036654-exon-sc0001491-1491911889:27517..27898 | TCONS_00036654-exon-sc0001491-1491911889:27517..27898 | Clytia hemisphaerica | exon |
| TCONS_00036654-exon-sc0001491-1491911889:18823..18857 | TCONS_00036654-exon-sc0001491-1491911889:18823..18857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001491 | supercontig | sc0001491:18823..27898 - |
Blast
The following BLAST results are available for this feature:
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