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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036653 ID=TCONS_00036653|Name=TCONS_00036653|organism=Clytia hemisphaerica|type=transcript|length=2698bp
TAACAATcctttatcattgttttaggTTCACTTGAAAACTTGCGGTTTTG
TGACCGTTTCTTGTGAATTAGATTGTGGAGAATTCGTCCTCCGTAAAAAC
ATAACAAATCACGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGAATA
CAAAGACTCAGGATGCTACTTTAAGGGCACCAAATTACAACTGGACAATC
ATATGGCGCAATCGGCCAACATGCATTTGTCTTTTGAAATGAAAAGTGgg
attttcaaaatgaaaaaagaattcgATCAAAAGTTAACAGCGAAAGATTT
TGAAGCTCAACAAATGGAAAATGAATTCACTGAACAGTTGAAAATGAGGG
ATAACGAAATCGGAAAAGTCCGGGTAAAACTTGATGGAGACTTGAAAGTA
AAAGACAAAATGATTCAAGCATTAGCGGAGAGATTAAAAATTGCAGAAGA
GAAATTGAAAGGGGTCGACGAAATGGAAATTAAAGTTCAGATGAACCAAA
CCGCCATCAAGTCcttggagaaaaaattgttgACGAAGTTGAAAACAACC
GATGAAtctctttttgatttgaaagaagAATTTATGCTGACTAAGCAGGA
AgttgaaaaagtcaaagaacGGCATCAAAAAGACGACCTTTTTAAAGCAC
CAGCTAGAGGTTTCGCTGTAAAAGAGGAATTAAATTCGACTATCTGCCCA
CCATCACTTTGTAACTATACATGGACCATCGAAAAATTCAAAGAGAATTT
TGACGCTCCTAAATGGTCTTTTTATAATTCGCCAATGTTTTTTACTAAGC
ATGGTTATAAAGGATGTATTTCCTCCAGGTTTCCCCTGACCATTCAAGAC
AACAAAAACACTTATGTGTCAGTTTTCTTTAGGAATGAGGTGAGTCCTCA
TGACGAAACTCTAGAATGGCCAATGCCTTGGAAATCGTTGACTTTCACTT
TAATATTTAATGGAGTTGAAATTGCTCAAACTGTGATAAGAAGTACAGAT
GAAGGAGGTAGATGGAAAGATTCATTTAAAAGACCACTTAGGGATATATC
TTCAAGTGTGGGCAATCAGTCAGCATTTGAACATGTCTTATTGAACATAA
CTACGAATGATAGTGTTGCAATAAGATTTGTAATGAATTGATCTTATACT
CGGTAAATAGTGTAAACTACATTTGAAACAGACTATCCATTTCGAAGAAA
TGGTATTTATGGGTGGAGCCTTGCATTAGTCGATCGAATTATTTATCGTC
TTTAATCAACTTTTCAATTTAAGACCTCCATTTAAACCTAAATGATCGAT
GGTAATTACAGTAATTACTTGACCTTACTCTTAGATTGACTTCGCCTTTG
GATATTTTGGACGCATCGCGTTTTCGTCGTCTTTTTAGAGTAAGTGAAGA
GTTTATAAAGATTACAAATACTCTTTGGttccaaaaaattttcgaaaatt
aacaATCAGGGGTggttatttggaacctaagaccatgttcagaaacgaaa
cggttccgaaacaagtgtgaacgtaaaaattcgaaacgtcaaaaaagaag
acgttacaaagcaaaacagatcgaaacggtttcgctccactatttttcat
cggaacggaactgctctgTTTTCTctctccgaaacgttccgaaactaATA
TGAAtactctcgatccgtaacgaaaatcacatcggagcgaaacggaactg
taacgtctgaacatggtctaagagTACACCTTTTACATCTGTGAAGCAAA
GAATATCACCCACCTTGAAAGACCTTCCccggaggtcctatgaattaacc
gatgtttgtccgttcgtctgctgttaccagcttttctcttGGGATTTGCT
CATCAGTTTTATCTAagtttttgcacaatgatacaaaattgCAATgcccg
gaaaaaaaatttttgtccgtaaaaatcggattttctcaCTATTGTACTGA
CTTTGTAAcaacttttttttggtaaaattatataaaatcattattttaca
aaatatatCAAAGCTACCTATTTTACTTGATATCGATTTGTTTTGTATTA
AATTGTAGTTCTTCTATTTTTCATCCAAATCTTCGCTCCGTATAACATAC
ACAGTCATGAATTTTCACGACTACAGCATTTTCTACACCAGATCAAAGTT
CTCCAAAGCAAATTGTTTCGACTTCTAAAAATTCTGTGGGAAAGATGTGT
TCTCAATTGGAAAgtcgaatacacgttttttttttttaagaaactagttt
taccaagcagcctcaatgtttcttaaaagattggccttttgagccttaaa
tgtttcttagatgtttctaaactttttgaaataatcagcctatttttcat
gcaaagattggaaggttctaaaaaacggagttaaaaatgttattttctca
ttctcagcctcagcatgtttcttagatgtttcttagtttttaggcattct
gagcctcatgtttcttaaaagtgtgtttctaaaaaaaaaaaacgtgtaag
caaGCTAGCTGTAACATAACATGAGCTGTCAATTATTTTCTTAGCTGCTT
TTCTTTAAAGGGAGAATGTTCTCCTTAAAGCTATACTTTGACACAACATA
CGTATGTATACAATCTCgctaaaatggaaatttttaatacaaatttccaa
aaatgattgacattgaattattaaaatttttatactAGGGAAACATAA Run BLAST on NCBI transcript from alignment at sc0001491:31511..34935+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036653 ID=TCONS_00036653|Name=TCONS_00036653|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at sc0001491:31511..34935+ (Clytia hemisphaerica)
TAACAATcctttatcattgttttaggTTCACTTGAAAACTTGCGGTTTTG
TGACCGTTTCTTGTGAATTAGATTGTGGAGAATTCGTCCTCCGTAAAAAC
GTAAGAACGATTTGTTATCATTTGTAAGATATCAGAGAGGCCtggaaaac
acgagttaaaagaCCTCAAAAAGGCTATGACGTCATAACCCGGGTTTTCT
TAACTCGGGTGTTTCAGACCTCGATATGTGAATACAAACCATGAAAACAC
TCGGGATAACTTTTTGTGAGGCCCTGAAAACCGGAGTTCGGCAAACCCTA
GTTACctatttgtgacgtcataacttgagagaaatgacgtcattttagaA
GATAACTTGATTTATGATAATAACTCGATTTGTTTGTGGTTACCTTGATC
GTTCGAGTTAGTTAACTCGGTTGTTATGAAAATATGAgttatgaaaattt
gttttctgGAATCTTTTAACCCAGTCTTTTTGGTGTATGTTTTTGAAAAC
AGTCGAACGTGCACAACGCACTCTCCTTCTACAATTGTAGACATATTATT
TTAGCTTATGGATTCTTCTTTAGATAACAAATCACGTGGATACCGTATGT
CCAATGGTCTCCTCTTGTGAATACAAAGACTCAGGATGCTACTTTAAGGT
AAATTTTTCTTATGTTGAAGCTGCTTTTTTCAATTTGCAAAGGaatatga
aatgaaaatttctaagCTGGCTAACTGAGTCTTTCGTGAATAATGTGCTA
CAGTATCtttattttgtcttatttttcaAAGTAGCTGTACGGCAGCACTA
TCCAGTTTTTTGTCATCTAAGTAAGTACAGTAAAGTATATAGGTAATAAG
CCAGATACATTGTTTGAAAAGCTAACACAGTTTCTAAATTGTTGGGTTTC
AGGGCACCAAATTACAACTGGACAATCATATGGCGCAATCGGCCAACATG
CATTTGTCTTTTGAAATGAAAAGTGggattttcaaaatgaaaaaagaatt
cgATCAAAAGTTAACAGCGAAAGATTTTGAAGCTCAACAAATGGAAAATG
AATTCACTGAACAGTTGAAAATGAGGGATAACGAAATCGGAAAAGTCCGG
GTAAAACTTGATGGAGACTTGAAAGTAAAAGACAAAATGATTCAAGCATT
AGCGGAGAGATTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGACGAAA
TGGAAATTAAAGTTCAGATGAACCAAACCGCCATCAAGTCcttggagaaa
aaattgttgACGAAGTTGAAAACAACCGATGAAtctctttttgatttgaa
agaagAATTTATGCTGACTAAGCAGGAAgttgaaaaagtcaaagaacGGC
ATCAAAAAGACGACCTTTTTAAAGCACCAGCTAGAGGTTTCGCTGTAAAA
GAGGAATTAAATTCGACTATCTGCCCACCATCACTTTGTAACTATACATG
GACCATCGAAAAATTCAAAGAGAATTTTGACGCTCCTAAATGGTCTTTTT
ATAATTCGCCAATGTTTTTTACTAAGCATGGTTATAAAGGATGTATTTCC
TCCAGGTTTCCCCTGACCATTCAAGACAACAAAAACACTTATGTGTCAGT
TTTCTTTAGGAATGAGGTGAGTCCTCATGACGAAACTCTAGAATGGCCAA
TGCCTTGGAAATCGTTGACTTTCACTTTAATATTTAATGGAGTTGAAATT
GCTCAAACTGTGATAAGAAGTACAGATGAAGGAGGTAGATGGAAAGATTC
ATTTAAAAGACCACTTAGGGATATATCTTCAAGTGTGGGCAATCAGTCAG
CATTTGAACATGTCTTATTGAACATAACTACGAATGATAGTGTTGCAATA
AGATTTGTAATGAATTGATCTTATACTCGGTAAATAGTGTAAACTACATT
TGAAACAGACTATCCATTTCGAAGAAATGGTATTTATGGGTGGAGCCTTG
CATTAGTCGATCGAATTATTTATCGTCTTTAATCAACTTTTCAATTTAAG
ACCTCCATTTAAACCTAAATGATCGATGGTAATTACAGTAATTACTTGAC
CTTACTCTTAGATTGACTTCGCCTTTGGATATTTTGGACGCATCGCGTTT
TCGTCGTCTTTTTAGAGTAAGTGAAGAGTTTATAAAGATTACAAATACTC
TTTGGttccaaaaaattttcgaaaattaacaATCAGGGGTggttatttgg
aacctaagaccatgttcagaaacgaaacggttccgaaacaagtgtgaacg
taaaaattcgaaacgtcaaaaaagaagacgttacaaagcaaaacagatcg
aaacggtttcgctccactatttttcatcggaacggaactgctctgTTTTC
TctctccgaaacgttccgaaactaATATGAAtactctcgatccgtaacga
aaatcacatcggagcgaaacggaactgtaacgtctgaacatggtctaaga
gTACACCTTTTACATCTGTGAAGCAAAGAATATCACCCACCTTGAAAGAC
CTTCCccggaggtcctatgaattaaccgatgtttgtccgttcgtctgctg
ttaccagcttttctcttGGGATTTGCTCATCAGTTTTATCTAagtttttg
cacaatgatacaaaattgCAATgcccggaaaaaaaatttttgtccgtaaa
aatcggattttctcaCTATTGTACTGACTTTGTAAcaacttttttttggt
aaaattatataaaatcattattttacaaaatatatCAAAGCTACCTATTT
TACTTGATATCGATTTGTTTTGTATTAAATTGTAGTTCTTCTATTTTTCA
TCCAAATCTTCGCTCCGTATAACATACACAGTCATGAATTTTCACGACTA
CAGCATTTTCTACACCAGATCAAAGTTCTCCAAAGCAAATTGTTTCGACT
TCTAAAAATTCTGTGGGAAAGATGTGTTCTCAATTGGAAAgtcgaataca
cgttttttttttttaagaaactagttttaccaagcagcctcaatgtttct
taaaagattggccttttgagccttaaatgtttcttagatgtttctaaact
ttttgaaataatcagcctatttttcatgcaaagattggaaggttctaaaa
aacggagttaaaaatgttattttctcattctcagcctcagcatgtttctt
agatgtttcttagtttttaggcattctgagcctcatgtttcttaaaagtg
tgtttctaaaaaaaaaaaacgtgtaagcaaGCTAGCTGTAACATAACATG
AGCTGTCAATTATTTTCTTAGCTGCTTTTCTTTAAAGGGAGAATGTTCTC
CTTAAAGCTATACTTTGACACAACATACGTATGTATACAATCTCgctaaa
atggaaatttttaatacaaatttccaaaaatgattgacattgaattatta
aaatttttatactAGGGAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036653-exon-sc0001491-1491911889:31511..31610 | TCONS_00036653-exon-sc0001491-1491911889:31511..31610 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1510915933:31511..31610 | TCONS_00036653-exon-sc0001491-1510915933:31511..31610 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1575043694:31511..31610 | TCONS_00036653-exon-sc0001491-1575043694:31511..31610 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1491911889:32084..32158 | TCONS_00036653-exon-sc0001491-1491911889:32084..32158 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1510915933:32084..32158 | TCONS_00036653-exon-sc0001491-1510915933:32084..32158 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1575043694:32084..32158 | TCONS_00036653-exon-sc0001491-1575043694:32084..32158 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1491911889:32413..34935 | TCONS_00036653-exon-sc0001491-1491911889:32413..34935 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1510915933:32413..34935 | TCONS_00036653-exon-sc0001491-1510915933:32413..34935 | Clytia hemisphaerica | exon |
| TCONS_00036653-exon-sc0001491-1575043694:32413..34935 | TCONS_00036653-exon-sc0001491-1575043694:32413..34935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001491 | supercontig | sc0001491:31511..34935 + |
Blast
The following BLAST results are available for this feature:
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