TCONS_00036649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036649
Unique NameTCONS_00036649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036649 ID=TCONS_00036649|Name=TCONS_00036649|organism=Clytia hemisphaerica|type=transcript|length=3139bp
GGACGAGAAacggaaaattattttaatctaATCCTGTAACTATTTGTGAA
AAGTTCGATCTTGGTTgctgaaagttagatttttaaACAATATGGCAGCT
TGTAAACCAGAAGAGTATGGTTTTGATGTGACGTTCATATGGGAAgacga
aaaatctgaaataCCTCAAACAACAGAAGAAAATTCTGTACAGAACGCCA
AAGAAATCAACAGAGACGATATCACTTGTGCAATATGCCTTTTGGTTTTG
CGAGAACCAGTACAAGCCGTGAAATGCGGGCATCGATTTTGCGAAAAATG
TATTGGGGAATTTCATCTTCAGAATCCGGGAAAATGCCCCAAAGATTGGC
AAGAGATTCAAGTTTTTCCTGATGtggggaaaaaaagagaaatactCAGT
CTGAAGATTCGATGTCCGAATTTTGTTGATGGATGTACGTGGCAAAATGA
GCTCAGAGAGAAAGAGGTTCACCTGAAAACTTGCGGTTTTGTGACCGTTC
CTTGTGAATTAGATTGTGGAGAATTCGTGCTCCGTAAAAACATAACAAAT
CACGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGAATACAAAGACTC
AGGATGCTACTTTAAGGGCACCAAATTACAACTGGACAATCATATGGCGC
AATCGGCCAACATGCATTTGTCTTTTGAAATGAAAAGTGggattttcaaa
atgaaaaaagaattcgATCAAAAGTTAACAGCGAAAGATTTTGAAGCTCA
ACAAATGGAAAATGAATTCACTGAACAGTTGAAAATGAGGGATAACGAAA
TCGGAAAAGTCCGGGTAAAACTTGATGGAGACTTGAAAGTAAAAGACAAA
ATGATTCAAGCATTAGCGGAGAGATTAAAAATTGCAGAAGAGAAATTGAA
AGGGGTCGACGAAATGGAAATTAAAGTTCAGATGAACCAAACCGCCATCA
AGTCcttggagaaaaaattgttgACGAAGTTGAAAACAACCGATGAAtct
ctttttgatttgaaagaagAATTTATGCTGACTAAGCAGGAAgttgaaaa
agtcaaagaacGGCATCAAAAAGACGACCTTTTTAAAGCACCAGCTAGAG
GTTTCGCTGTAAAAGAGGAATTAAATTCGACTATCTGCCCACCATCACTT
TGTAACTATACATGGACCATCGAAAAATTCAAAGAGAATTTTGACGCTCC
TAAATGGTCTTTTTATAATTCGCCAATGTTTTTTACTAAGCATGGTTATA
AAGGATGTATTTCCTCCAGGTTTCCCCTGACCATTCAAGACAACAAAAAC
ACTTATGTGTCAGTTTTCTTTAGGAATGAGGTGAGTCCTCATGACGAAAC
TCTAGAATGGCCAATGCCTTGGAAATCGTTGACTTTCACTTTAATATTTA
ATGGAGTTGAAATTGCTCAAACTGTGATAAGAAGTACAGATGAAGGAGGT
AGATGGAAAGATTCATTTAAAAGACCACTTAGGGATATATCTTCAAGTGT
GGGCAATCAGTCAGCATTTGAACATGTCTTATTGAACATAACTACGAATG
ATAGTGTTGCAATAAGATTTGTAATGAATTGATCTTATACTCGGTAAATA
GTGTAAACTACATTTGAAACAGACTATCCATTTCGAAGAAATGGTATTTA
TGGGTGGAGCCTTGCATTAGTCGATCGAATTATTTATCGTCTTTAATCAA
CTTTTCAATTTAAGACCTCCATTTAAACCTAAATGATCGATGGTAATTAC
AGTAATTACTTGACCTTACTCTTAGATTGACTTCGCCTTTGGATATTTTG
GACGCATCGCGTTTTCGTCGTCTTTTTAGAGTAAGTGAAGAGTTTATAAA
GATTACAAATACTCTTTGGttccaaaaaattttcgaaaattaacaATCAG
GGGTggttatttggaacctaagaccatgttcagaaacgaaacggttccga
aacaagtgtgaacgtaaaaattcgaaacgtcaaaaaagaagacgttacaa
agcaaaacagatcgaaacggtttcgctccactatttttcatcggaacgga
actgctctgTTTTCTctctccgaaacgttccgaaactaATATGAAtactc
tcgatccgtaacgaaaatcacatcggagcgaaacggaactgtaacgtctg
aacatggtctaagagTACACCTTTTACATCTGTGAAGCAAAGAATATCAC
CCACCTTGAAAGACCTTCCccggaggtcctatgaattaaccgatgtttgt
ccgttcgtctgctgttaccagcttttctcttGGGATTTGCTCATCAGTTT
TATCTAagtttttgcacaatgatacaaaattgCAATgcccggaaaaaaaa
tttttgtccgtaaaaatcggattttctcaCTATTGTACTGACTTTGTAAc
aacttttttttggtaaaattatataaaatcattattttacaaaatatatC
AAAGCTACCTATTTTACTTGATATCGATTTGTTTTGTATTAAATTGTAGT
TCTTCTATTTTTCATCCAAATCTTCGCTCCGTATAACATACACAGTCATG
AATTTTCACGACTACAGCATTTTCTACACCAGATCAAAGTTCTCCAAAGC
AAATTGTTTCGACTTCTAAAAATTCTGTGGGAAAGATGTGTTCTCAATTG
GAAAgtcgaatacacgttttttttttttaagaaactagttttaccaagca
gcctcaatgtttcttaaaagattggccttttgagccttaaatgtttctta
gatgtttctaaactttttgaaataatcagcctatttttcatgcaaagatt
ggaaggttctaaaaaacggagttaaaaatgttattttctcattctcagcc
tcagcatgtttcttagatgtttcttagtttttaggcattctgagcctcat
gtttcttaaaagtgtgtttctaaaaaaaaaaaacgtgtaagcaaGCTAGC
TGTAACATAACATGAGCTGTCAATTATTTTCTTAGCTGCTTTTCTTTAAA
GGGAGAATGTTCTCCTTAAAGCTATACTTTGACACAACATACGTATGTAT
ACAATCTCgctaaaatggaaatttttaatacaaatttccaaaaatgattg
acattgaattattaaaatttttatactAGGGAAACATAA
Run BLAST on NCBI

transcript from alignment at sc0001491:15163..34935+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036649 ID=TCONS_00036649|Name=TCONS_00036649|organism=Clytia hemisphaerica|type=transcript|length=19773bp|location=Sequence derived from alignment at sc0001491:15163..34935+ (Clytia hemisphaerica)
GGACGAGAAacggaaaattattttaatctaATCCTGTAACTATTTGTGAA
AAGTTCGATCTTGGTTgctgaaagttagatttttaaACAATATGGCAGCT
TGTAAACCAGAAGAGTATGGTTTTGATGTGACGTTCATATGGGAAgacga
aaaatctgaaataCCTCAAACAACAGAAGAAAATTCTGTACAGAACGCCA
AAGAAATCAACAGAGACGATATCACTTGTGCAATATGCCTTTTGGTTTTG
CGAGAACCAGTACAAGCCGTGAAATGCGGGCATCGATTTTGCGAAAAATG
TATTGGGGAATTTCATCTTCAGAAGTAAGTGCGAACAGTAGCCAGTTCAC
GTCgaaattttctatatttttgttAGTCGTCATTTTCTTGTGTTCTATAA
AAAGTTTTCGTTAAGCAAAGAATCTACAGCTCAAATTAATTGCATTGGAG
AATTATTTATGTTAATCATTTTATTCTAGTCCGGGAAAATGCCCCAAAGA
TTGGCAAGAGATTCAAGTGTTTCCTGATgtgggaaaaaaaagagaaatac
tCAGTTTGAAGATTCGATGTCCGAATTTTGTTGATGGATGTACGTGGCAA
AATGAGCTCAGAGAGAAAGAGGTTTGTAGGCATTATTTCATTTAATATCA
TCTGTACGCAGAAAGAAGACGTTTTCGAAAGTGGGGATGGCTGTTCTAGA
AAAACGCTAAAAAACTACAGCAAATTTCTGATTTTGGGATCTGGCACTAT
GTTAAAATCATAAGACCCTCCACTTTACTAAATTGGATGCTTTAAGTTAT
GCTCTCATTAGGACCAATTTATGAAGTGAAACCATATCGCCTTGAAGGGA
GGGGGGAATCTACTTGATGATATTTATAATGATTTtgatttatacaaaaa
tttaaaaaggggAAGAGCCTAGAGGTAGAGGAGGCTGATCTATATTTGAG
GTAGCAACCCCCTTCCATACATAAGCTTTAGgccaattttcttatttagg
gAGTCAATTTCTTTTGCAATAGATAATAACAAGCATTTATCATCGTTTTA
GGTTCACCtgaaaacttgtggatttgTGACTGTTCCTTGTGAATTAGATT
GTGGAGAATTCGTGCTCCGTAAAAACGTAAGAACGATTTGTTATCATTTG
TAAGATATCAGAGAGGCCTGGAAAAATACGAGTTAAAGGACCTTAAAAAA
CCTCGGGTCATAACTCTGGTTTTCTTAACCCGGGTTTTGCAGACCTCGAT
ATGTGAATACAAACCATGAAAACACTCGGGATAACTTTTTGTGAGGCCCT
GAAAACCGGAGTTCGGCAAACCCTAGTTACCTATTTTCATAACTTGAGAG
AAATGGCGTCATTTTAGAAGATAACTTGATTTATGATAATAGCTCGATTT
GTTTGTGGTTACCTTAATCGTTCGAGTTAGTTAACTCGGTTGTTATGAAA
ATATGAgttatgaaaatttgttttctgGAATCTTTTAACCCAGTCTTTTT
GGTGTATGTTTTTGAGTTTGTTAACTCGGATTTTCAAGAGGCCCGAAAGA
GCTGATGTTGAAAAACTCGAAATATTTTACTAAGAGGGAGTTTTAGTAGT
CTATGAATCTGTAAAGGTGCCCTCTTATGCAAATGAAACATTTGCTTCAA
AAACGACAGTGGAAATCTCATCTTAtgattctcaacttcagttgagttac
aatctgacaatgtctgagtgtgtgtgtctgtctgtctgtcacaaaaactt
tagggcagcctggagacttcaaaaatgcttggatttggctgaaatttggc
acacttgttccttgggtgaatatctgggttttttttcttcattttttgaa
aattttgatttttggggcctggggacgagtttttcgccaaaacgaggcta
aaactttggggcaacctggagacttcaaaaattgttcattttggctgaaa
ttttgcacacttgttccttggctgaatatctggggttctacaattgggca
tatgaatagtttgaaggcactgaagttgagccctgTGCGTTgtgcacgtt
cgactattcTACAATTATAGACATATTATTTTAGCTTATGGATTCTTCTT
TAGATAACAAATCACGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGA
ATACAAAGACTCAGGATGCTACTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAAAAATTGTTcattttgactgaaattttg
cacacttgttccttggctgaatatctggggttctacaattgggcctatga
aggcactgaagttgagcccagtgcgcgTGTTCGACTATTCTACAATTGTA
GACATATTATTTTAGCTTATGGGTTCTTCTTTAGATAACAAATCACGTGG
ATACCGTATGTCCAATGGTCTCCTCTTGTGAATACAAAGACTTAGGATGC
TACTTTAAGGTACATTTTTCTTATGTTGAAGCtgcttttttcaatttcca
aaggaatgaaataaaaatttccgaATAAATCGAGAGACGAACTAAGCTGG
CTAACTACAAAAGACTCTGCAAGGAGTCTTTCGTGGATAAAGTGCTACAG
TATCtttattttgtcttatttttcaAAGTAGCTGTACTCTCCGGATTTTT
TGTCATCTAAGTAAGTACAGTAAAGTATATAGGTAATAAGCCAGATATAT
TATTTGAAAAGCTAACGCAGTTTCTAAATTGTTGCGTTTCAGGGCACCAA
ATTACAACTGGACAATCATATGGCACAATCGGCCAACATGCATTTGTCTC
TTGAAATGAAAAgtgagattttcaaaataaaaaaagaattcgaTCAAAGG
TTGACAGCGAAAGATTTTGAAGctcaacaaatgaaaaatgaatttgctGA
ACAGTTGAAAATGAGGGATAATGAAATCGGAAAAGTCCGGTTGGATCTTG
ATCGAGACTTGAAAGCAAAAGACAAATTGATTCATGCATTAGCGGAGCGA
TTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGACGAAATGGAAATCAA
AGTTCAGATGAACCAAACTGCCATCAAGTCCTTGGAGAAAAAATTGCTGA
CGAAGTTGAAAACAACCGATAAAtctctttttgatttgaaagaagAATTT
ATGCTGACTAAGCAGGAAGTTGAAAAAGACAAAGAACGGAATCAAAAAGA
CGATCTTTTTAAAGGATCGGGTAGAGGTTTAGCTGTAAAAGAGGAATTAA
ATTTGGCTATCTGCGCACCATCACTATGTAACTATACATGGACCATCGAA
AATTTCAAAGAGAAATTTGACGCTGCTACGAAATGGAATGAGTATAATTC
ACCATATTTTTTACTAAGCATGGTTATAAAGGATGTATTTTCTCCAGGTT
TCGCATGACCAATCAAGACAACAAAAACACTTATGTATCAATTTTCTTTA
ATAATGAGGAGGGTCCTCATGACGATACTTTAGAATGGCCAATGCCTTGG
AAATCATTGATTTTCACTTTGATATTTAATGGAGTTGAAATTGCTCAAAC
TGTGAGAAGAAGTAAAGATGAAGGAGGTAGATGGAAAGATTCATTTGAAA
GACCAGTTGGTTACTGTGCTTACCGGCTTGGAAATCCGTCAGCATTTGAG
CACGGCTTATTCAAGAACATAACTATGAATGATAGTGTTGCAATAAGATT
TGGAATGAATTAATCTTCTAGTCCTTAATTGGTGTAAATGTCGTTATATA
TTACGTTTTCGTCTTCTTTTTAGAGTAAATGTATGAAGAGTTTATAAAGA
TTAGAAATACGGGGgcgttggaaaattttcaaatttagttCGAAAACCTC
gaacaaagaccaaaacaacgtccaGTCTGTCCAAATCTACTGACAACTGG
GCGGCAGATGAAGATTAGACAATATATTGTAAATTCTAAAATTATTCCGT
AGATAATTAATtaataattctatgaataaataAAGTAAATGAATGAATAT
GGACCAATTGGAATGCAATCATTAATGCTCATATGAAAAGATTGAATTAC
aatattttatttgaataaTTTCTTGAAACTGTCACTAAGAACAGTGAATC
AAcaattcacaaaaaatgaataaccttcctgatttttcgattttatgcTC
AAATTGCTGATCTAAATGATAGCGTATTATGGGGTGATTCTCGAGAAAAA
CGTGTGTTTTTAGGGCGAAAGGTTCTATAGTGTTATTATAAAGGAACTAT
CACTCTTACCTAAGTAGTTTCATTTTTCTAAGGAATGCTGTctttaaatc
tttaaatttcaaggcCATTGATTTGTCTATATTCTGTTTTTTGATAGATC
TTTTTGTTCAAGAGgtattttgaaagtgatagtaTCGAGATATGAGCTTA
CTGTAGCATGCTATAGTTTTGGAGAGGGACGAGAAacggaaaattatttt
aatctaATCCTGTAACTATTTGTGAAAAGTTCGATCTTGGTTgctgaaag
ttagatttttaaACAANGTGAGCTTACTGTAGCAAGCTATAGTTTTGGAG
AGGGAAGAGAAacggaaaattctttttaatcTGATCCTATAACTATTTGT
GAAAGTTCCATCTTGGTCGCCAAAagttagatttttaaaaaatatggcAG
CTTGTAAACCAGAAGAGTATGGTTTTGATGTGACGTTCATCTGGGAAGAC
GAAAAATCTGAAGTATCTCAAGCAACAGAAGAAAATTCTGTACAGAACGC
CAAAGAAATCAATAGAGACGATATCACTTGTGCAATATGTCTTTTGGTTT
TGCGAGAACCAGTACAAGCCGTGAAATGCGGGCATCGCTTTTGTGAAAAA
TGTATTGGGGAATTTCATCTTCAGAAGTAAGTGTGAACAGTAGTCACGTC
GAAATTTTCTATACTTTTGTTAGTCGTCATTTTCTTGTGTTCTATAAAAA
GTTTTCGTTAAGGAAAGAATCTACTGCACTCAAATTAATTGCCTTGGAGA
GTTTTTTATTTGGCACCATTCTTGCAAAAATGCATTATGCGGTGTGCCTG
TATAAAAGAAGATCACAGTATAATATTTTCATGATAATCATTTTATTCTA
GTCCGGGAAAATGCCCCAAAGATTGGCAAGAGATTCAAGTTTTTCCTGAT
GtggggaaaaaaagagaaatactCAGTCTGAAGATTCGATGTCCGAATTT
TGTTGATGGATGTACGTGGCAAAATGAGCTCAGAGAGAAAGAGGTTTGTA
GGATTATTTCATTTGATATCATCTGTACGCAGAAAGAAGAAGTTTTCAAA
AGTGGGGATGGCTGTTCTAGAATAAATGTTCAAAAACTACAGCAAATTTC
TAATTTTAGGATCTGGCACTGTGTTAAAATCATAAAGACCCTCCACTTTA
CGCAAATTTTTACTTAATTGGATACTTAAGTTAGGCTCTCATTAGGGCCA
ATTTATGTAGTTCAACCATATCACCTTGGAGGGGGGAGGAATCTACTTGA
Tgatatcatgaacatataaacgactggacatccatctcctttttcttttt
gtagaaaaggctgttagcttcgttgccgcctcgttaaaagcataaaatga
aaaatagattttgatgatataccgcttgggaataccttgctaacaacgtc
aaaacttcgacaaaagtctctgttgttctactcttctcaagtcgtttatc
tatatcatgataacaaagataacagaggcaaaatcatcgtcagcttgtca
aaactccgactaatatttctaaattttgacttaaaagtgtctactAATAG
GAGTGGGCTATACAgggtcatttttatttttttcgtcaaatcatgtcaaa
ctaaattttctttagCTCCGTATGGCATATCTAGGCAggatcaaaaagaa
tttttgagatattttaaatataaaaaaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGCCCCTTTTCTGGCCCCCTATTAGACTCATAT
AAAGTATGACAAAAAAATCCCCAATTTGACCTGGAAACcttaaaaatcat
tcaattttGCTGCAATTTGGTAAAAGTCCTCCTTGAATAacaataaacca
gccgaggctggaaggtcagccaatagagcttagctagatagctttaataa
gtgggttaacagatgtaagagatgNttgtagtttagtaccgtcaagttac
acaacatgcacacaaccatcttgaagactttgctggtcgcaaatgataat
cgaaagcaaaacttaagattcataactatgcagggaagctcattttcccc
cattttgctttaaactcccttttaattggtctatgaatttgggcaatcgc
tttaccgccttggcggaataaacacacaaccataatacataaattcaaca
gggcagcggagtagtaattaatttcaactgggagtcctctcttctgtgcc
aagcactggcagtgttttttaaactttaaaacaatgttaaatgaagacta
GATGAATCATGattgtgcaagttgtgacgagagtgtgcatgttgtgtaac
ttgacggtataattcattaaattctagaaaccatttttcataactttctg
cagtacACTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtaaaaattttaagatttcacaaTTTACACTGACAAATCTTCA
CCTGAAGAGGTAATGTGCCAAATTTAAGCAGGAAAGAATGTTTTCTCGCC
TTTATAGTCAAGCTTCCTCTTTTTTGCCTGCGTAAAGCCTTTGGGCTACg
cccaaaatgtcaaaaattatatttctcgaataaatgttttgatataCTTT
ATTTCTGTCCCTGAGAAGTGAATGTGCCAAATTTGAGCGGAATTCAATCA
CTGTGTGTCTCATTTCCAACATAATTTGGGTAGTTGGGTAGATGGAAAAA
GATTGATTTGAGGGCACAAACCTCAGTCTACAAAAAGGCTTcccacattt
tttttcttcatttttgttcaaaaattctaTTTGATCCTGTCTACACTTAT
AATTTAGAccttaaaaaatttagtttgaaattttttgaaaaatcacccTG
TATAGCCCACTCCtactaataattttagagagtgttacattctaatttcg
attttCTTATGAAACAGGCTCTcgactttggcaagctatttttttcaagt
cataaaaaaaattatttgagtgacaaaagggattcaaaagtatacacgca
gttgaatttctgcattttagggttgaaaatgtcaataaaatatattgcaa
acttataattcaaagaaatcaaattatgacggaatattgtcggatttttt
cataccaattttgaaatacaggcggcaacgaagctcgcttcaaagagaca
ataaaagatagacgtccagttgtttatatgttcatgatgaTATTCATaat
gattttgatttataataaaattttagaaagGGGAAGAGTCTAAAGGTAGA
GGAGGTTGATCTATAACTGAGGTAGTAACCCCCTTCCGTACTCAGGCTAT
AAgccaattttcttatttagggAGTCAATTTCTTTTGCAATAGATAATAA
CAAGCATTTATCATCGTTTTAGGTTCACCTGAAAACTTGCGGTTTTGTGA
CCGTTCCTTGTGAATTAGATTGTGGAGAATTCGTGCTCCGTAAAAACGTA
AGAACGATTTGTTATCATTTGTAAGATATCAGAGAGACccggaaaacacg
agttaaaggACCTTAAAAAAACGTTATGGCGTCATTACGTTTTCTTAACT
CGGGTTCTTCAGACCTTGATATGTGAATACAAACCATGAAAACACTCGGG
ATAACTTTTTGTGAAGCCCTGAAAACCAGAGTTCGCCAAACCCTAGTcat
ttgtgacgtcataacttgagagaaatgacgtcattttagaACATAACTTG
ATTTATGATAATAACTCGATTTGTTTGTGGTTACCTTAATCGTTCGAGTT
AGTTAACTCGGTTGTTATGAAAGAATGAGTNTTTTAGAAGATAACTTGAT
TTATGATAATAACTCGATTTGTTTGTGGTTACCTTAATCGTTCGAGTTAG
TTAACTCGGTTGTTACGAAAATATGAgttatgaaaatttgttttccgGAA
TCTTTTAACCCAGTCTTTTTGGTGTATGTTTTTTTGAGTTTGTTAACTCG
GATTTTCAAGAGGCCCGAAAGAACTGAtgttgaaaaacttgaaatatcTT
ACTAAGAGGGAGTTTTACTACGAATCTTTAAAGGTGACCTCTTATGCAAA
TGTTCAAAAACGACAGTGGAAATCTCATCTTAtgattctcaacttcagtt
gagctacaatctgacaatgtctgtgtgtgtctgtctgtctgtcacaaaaa
ctttagggcagccttgagactcaaaaatgcttggatttagctgaaatttg
gcacacttgttccttgggtgaatatctggggtacttttttcattttttga
aaattttgatttttggggcctggggatgagtttttcgccaaaacgaggct
aaaactttgaggcagcctggagacttcaaaaattgttcattttgactgaa
attttgcacacttgttccttggctgaatatctggggttctacaattgggc
ctatgaaggcactgaagttgagcccagtgcgcgTGTTCGACTATTCTACA
ATTGTAGACATATTATTTTAGCTTATGGGTTCTTCTTTAGATAACAAATC
ACGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGAATACAAAGACTTA
GGATGCTACTTTAAGGTACATTTTTCTTATGTTGAAGCtgcttttttcaa
tttccaaaggaatgaaataaaaatttccgaATAAATCGAGAGACGAACTA
AGCTGGCTAACTAAAAAAGACTCTGCAAGGAGTCTTTCGTGGATAAAGTG
CTACAGTATCtttattttgtcttatttttcaAAGTAGCTGTACGGCAGCA
CTGTCCGGATTTTTGTCATCTAAGTAAGTACAGTAAAGTATAATAGGTAA
TAAGCCAGATATATTATTTGAAAAGCTAACGCAGTTTCTAAATTGTTGGG
TTTCAGGGCACCAAATTACAACTGGACAATCATATGGCACAATCGGCCAA
CATGCATTTGTCTCTTGAAATGAAAAgtgagattttcaaaataaaaaaag
aattcgaTCAAAAGTTGACAGCGAAAGATCTCGAAgctcaagaaatgaaa
aataaatttgctgaACAGTTGAAAATGAGGGATAACGAAATCGGAAAAGT
CCGGTTGGATCTTGATGGAGACTTGAAAGCAAAAGACAAAATGATTCGAG
CATTAGCGGAGCGGTTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGAC
GCAATGGAAATTAAAGTTCAGATGAACCAAACCACCATCAAGTCGTTGGA
GAAAAAAATGCTGACGAAGTTGAAGGCAACCGATAAAtctatttttgatt
tgaaagaagAATTTATGCTGACTAAGCAGGAAgttgaaaaagtcaaagaa
cGGAATCAAAAAGACGATCTTATTAAAGCATCGGGTAGAGCTGTAAAAGA
GGAATTAAATTTGGCTATCTGCGCACCATCACTATGTAACTATACATGGA
CTATCGAAAAATTCAAAGAGAAATTTGACGCTGCTATGAAATGGAGATAT
GATGATTCACCATATTTTTTTACTAAGCATGGTTATAAAGGATGTATTTT
CTCTGGGTTTCGCGAGACCAATCTAGTCAACAAAAACACTTATGTGTCAG
TTTTCTTTAAGAATGAGGTGGGACGTCATGACGATACTTTGGATTGGCCA
ATGCCTTGGAAATCATTGATTTTTACTCTAATCTTTAATGGAGTTGAAAT
TGCTCAAACTGTGACAAGAAGTACAGATGAAGGAGGTAGATGGAAAGATT
CATTTAAAAGACCACTTGCGTGTACATCTTTCTATGTGGGAAACCCGTCA
GCATTTGAACATGGCTTATTCAAGGACATAACTATGAATGATAGTGTTGC
AATAAGATTTGAAATGAATTGATCTTATACTCAGTAAATGGTGTAAACTA
CATTTGAAACAGACTATCCATTTCGAAGAAATTGTATTTATGGGTGGAGC
CTTGGATTAGTCGATCGAATTATTTATCGTATTTAATCAACTTTTTAATT
TAAGACCTCCATTTAAACCTAAATGATCGATGGTAATTACNNNNNNNNNN
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NNNNNNNctttagaccccaattttgtattttcgacaccctgggatggcct
aatttcaaacttggagctccgagatcaaaagtttctaaaaggcggacact
tctaattagcggacactatcccctttccccgatggtgtccgctaattaga
ggttccactgtagtaatttaatctttctttccAAATTCCAATTTTGTGAT
CTGGCGCTGTGTTAAAATCCTAAAGACCCTCCACTTTACGCAAAATTTTA
CTAAATTGGATACTTTAAGTCAGGCTCTCATTAGGGCCAATTTATGTAGT
TAAACCAacatatacagggtgtccctaattaaagtatcgagtttgaacat
gcgattgagtagaaaagtttgtgtgtgttatcgctaaaatataagaacgt
tctccatcacacaggcttattacaaaaggtagttacaaccattgagtttc
aagcccgaagggctagaggtcaatctctaacctttctcaggcaagaaaaa
ttgaagctttaaaatatgcgccgtatttttgatgacggattgaatctagc
acttcctttgttttcgagtgatatatttttcaaaatgaagcggtaaattt
tggtttcaatctgtcatttgtgtaaaaaccaggcgggtcgctcaaggccg
cgcaactttggtaggatttgttggcttcaaatcctaccaagNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNaagagggagagcttaaaatacaattttgtgaacacgcacataaaactt
tctactcaatcgcatgttcaaactcgatactttaattagggacaccctgt
aaacgactggacatccatctcttttgtctttttgtagaaaaggccgttag
cttcgttgccgcctcgttaaaagcataaaatgaaacaatagattttgatg
atataccgcttgggaataccttgctaacaacgtcaaaacttcgacaaaag
tctctgttgttctactcttctcaagtcgtttatctatatcataacgaaga
taacagaggcaaaatcatcgccagcttgtcaaaactccgactaatatttc
caaattttgacttaaaagtgtctaataatNtcagcttgtcaaaactccga
ctaatatttctaaattttgacttaaaagtgtctaataatttcagagagtg
tcacattctaatttctattttcttatgaaacaggctctcaactttggcaa
gctatttttttcaagtcataaaataaattatttgagtgacaaaagggata
caaaagtatacacgcagttgaaattctgcattttagagttgaaaatgtta
ataaaatatattgcaaacttgtgaaaaaattcgaaaataatttttttgta
cattaggagtaacgttcaagctctatcaatccttttacctaaataattca
aggaaataaaattatgacggaatattgtcggatttttcataccaattttg
aaatacagacgGCAACGaggctcgcttcaaagagacaataaaagatagac
gtccagttttttatatgttcatgatgaTATTTATAATGGTTTTGatttat
aataaaattttaaaaaggggAAGAGCAACCCCCTTCCGTACCTAAGCTTT
AGgccaattttcttatttagggAGTCAATTTCATTTTGCAATGAATAATA
ACAATcctttatcattgttttaggTTCACTTGAAAACTTGCGGTTTTGTG
ACCGTTTCTTGTGAATTAGATTGTGGAGAATTCGTCCTCCGTAAAAACGT
AAGAACGATTTGTTATCATTTGTAAGATATCAGAGAGGCCtggaaaacac
gagttaaaagaCCTCAAAAAGGCTATGACGTCATAACCCGGGTTTTCTTA
ACTCGGGTGTTTCAGACCTCGATATGTGAATACAAACCATGAAAACACTC
GGGATAACTTTTTGTGAGGCCCTGAAAACCGGAGTTCGGCAAACCCTAGT
TACctatttgtgacgtcataacttgagagaaatgacgtcattttagaAGA
TAACTTGATTTATGATAATAACTCGATTTGTTTGTGGTTACCTTGATCGT
TCGAGTTAGTTAACTCGGTTGTTATGAAAATATGAgttatgaaaatttgt
tttctgGAATCTTTTAACCCAGTCTTTTTGGTGTATGTTTTTGAAAACAG
TCGAACGTGCACAACGCACTCTCCTTCTACAATTGTAGACATATTATTTT
AGCTTATGGATTCTTCTTTAGATAACAAATCACGTGGATACCGTATGTCC
AATGGTCTCCTCTTGTGAATACAAAGACTCAGGATGCTACTTTAAGGTAA
ATTTTTCTTATGTTGAAGCTGCTTTTTTCAATTTGCAAAGGaatatgaaa
tgaaaatttctaagCTGGCTAACTGAGTCTTTCGTGAATAATGTGCTACA
GTATCtttattttgtcttatttttcaAAGTAGCTGTACGGCAGCACTATC
CAGTTTTTTGTCATCTAAGTAAGTACAGTAAAGTATATAGGTAATAAGCC
AGATACATTGTTTGAAAAGCTAACACAGTTTCTAAATTGTTGGGTTTCAG
GGCACCAAATTACAACTGGACAATCATATGGCGCAATCGGCCAACATGCA
TTTGTCTTTTGAAATGAAAAGTGggattttcaaaatgaaaaaagaattcg
ATCAAAAGTTAACAGCGAAAGATTTTGAAGCTCAACAAATGGAAAATGAA
TTCACTGAACAGTTGAAAATGAGGGATAACGAAATCGGAAAAGTCCGGGT
AAAACTTGATGGAGACTTGAAAGTAAAAGACAAAATGATTCAAGCATTAG
CGGAGAGATTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGACGAAATG
GAAATTAAAGTTCAGATGAACCAAACCGCCATCAAGTCcttggagaaaaa
attgttgACGAAGTTGAAAACAACCGATGAAtctctttttgatttgaaag
aagAATTTATGCTGACTAAGCAGGAAgttgaaaaagtcaaagaacGGCAT
CAAAAAGACGACCTTTTTAAAGCACCAGCTAGAGGTTTCGCTGTAAAAGA
GGAATTAAATTCGACTATCTGCCCACCATCACTTTGTAACTATACATGGA
CCATCGAAAAATTCAAAGAGAATTTTGACGCTCCTAAATGGTCTTTTTAT
AATTCGCCAATGTTTTTTACTAAGCATGGTTATAAAGGATGTATTTCCTC
CAGGTTTCCCCTGACCATTCAAGACAACAAAAACACTTATGTGTCAGTTT
TCTTTAGGAATGAGGTGAGTCCTCATGACGAAACTCTAGAATGGCCAATG
CCTTGGAAATCGTTGACTTTCACTTTAATATTTAATGGAGTTGAAATTGC
TCAAACTGTGATAAGAAGTACAGATGAAGGAGGTAGATGGAAAGATTCAT
TTAAAAGACCACTTAGGGATATATCTTCAAGTGTGGGCAATCAGTCAGCA
TTTGAACATGTCTTATTGAACATAACTACGAATGATAGTGTTGCAATAAG
ATTTGTAATGAATTGATCTTATACTCGGTAAATAGTGTAAACTACATTTG
AAACAGACTATCCATTTCGAAGAAATGGTATTTATGGGTGGAGCCTTGCA
TTAGTCGATCGAATTATTTATCGTCTTTAATCAACTTTTCAATTTAAGAC
CTCCATTTAAACCTAAATGATCGATGGTAATTACAGTAATTACTTGACCT
TACTCTTAGATTGACTTCGCCTTTGGATATTTTGGACGCATCGCGTTTTC
GTCGTCTTTTTAGAGTAAGTGAAGAGTTTATAAAGATTACAAATACTCTT
TGGttccaaaaaattttcgaaaattaacaATCAGGGGTggttatttggaa
cctaagaccatgttcagaaacgaaacggttccgaaacaagtgtgaacgta
aaaattcgaaacgtcaaaaaagaagacgttacaaagcaaaacagatcgaa
acggtttcgctccactatttttcatcggaacggaactgctctgTTTTCTc
tctccgaaacgttccgaaactaATATGAAtactctcgatccgtaacgaaa
atcacatcggagcgaaacggaactgtaacgtctgaacatggtctaagagT
ACACCTTTTACATCTGTGAAGCAAAGAATATCACCCACCTTGAAAGACCT
TCCccggaggtcctatgaattaaccgatgtttgtccgttcgtctgctgtt
accagcttttctcttGGGATTTGCTCATCAGTTTTATCTAagtttttgca
caatgatacaaaattgCAATgcccggaaaaaaaatttttgtccgtaaaaa
tcggattttctcaCTATTGTACTGACTTTGTAAcaacttttttttggtaa
aattatataaaatcattattttacaaaatatatCAAAGCTACCTATTTTA
CTTGATATCGATTTGTTTTGTATTAAATTGTAGTTCTTCTATTTTTCATC
CAAATCTTCGCTCCGTATAACATACACAGTCATGAATTTTCACGACTACA
GCATTTTCTACACCAGATCAAAGTTCTCCAAAGCAAATTGTTTCGACTTC
TAAAAATTCTGTGGGAAAGATGTGTTCTCAATTGGAAAgtcgaatacacg
ttttttttttttaagaaactagttttaccaagcagcctcaatgtttctta
aaagattggccttttgagccttaaatgtttcttagatgtttctaaacttt
ttgaaataatcagcctatttttcatgcaaagattggaaggttctaaaaaa
cggagttaaaaatgttattttctcattctcagcctcagcatgtttcttag
atgtttcttagtttttaggcattctgagcctcatgtttcttaaaagtgtg
tttctaaaaaaaaaaaacgtgtaagcaaGCTAGCTGTAACATAACATGAG
CTGTCAATTATTTTCTTAGCTGCTTTTCTTTAAAGGGAGAATGTTCTCCT
TAAAGCTATACTTTGACACAACATACGTATGTATACAATCTCgctaaaat
ggaaatttttaatacaaatttccaaaaatgattgacattgaattattaaa
atttttatactAGGGAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021635XLOC_021635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036649-exon-sc0001491-1491911889:15163..15486TCONS_00036649-exon-sc0001491-1491911889:15163..15486Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1510915933:15163..15486TCONS_00036649-exon-sc0001491-1510915933:15163..15486Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1575043694:15163..15486TCONS_00036649-exon-sc0001491-1575043694:15163..15486Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1491911889:20464..20605TCONS_00036649-exon-sc0001491-1491911889:20464..20605Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1510915933:20464..20605TCONS_00036649-exon-sc0001491-1510915933:20464..20605Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1575043694:20464..20605TCONS_00036649-exon-sc0001491-1575043694:20464..20605Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1491911889:25285..25359TCONS_00036649-exon-sc0001491-1491911889:25285..25359Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1510915933:25285..25359TCONS_00036649-exon-sc0001491-1510915933:25285..25359Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1575043694:25285..25359TCONS_00036649-exon-sc0001491-1575043694:25285..25359Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1491911889:32084..32158TCONS_00036649-exon-sc0001491-1491911889:32084..32158Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1510915933:32084..32158TCONS_00036649-exon-sc0001491-1510915933:32084..32158Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1575043694:32084..32158TCONS_00036649-exon-sc0001491-1575043694:32084..32158Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1491911889:32413..34935TCONS_00036649-exon-sc0001491-1491911889:32413..34935Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1510915933:32413..34935TCONS_00036649-exon-sc0001491-1510915933:32413..34935Clytia hemisphaericaexon
TCONS_00036649-exon-sc0001491-1575043694:32413..34935TCONS_00036649-exon-sc0001491-1575043694:32413..34935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001491supercontigsc0001491:15163..34935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133693	0.174164	0.413339	0	0	0	0.558217	0.204877	0.433751	0.248002	0.217613	0.409175	0.207319	0.319501	0.24917	0.0785825	0.145549	0.137692	0.467262	0.471467	0.368809	0.452126	0.135127	0	1.28188	0.170852	0	0	0.247919	0.119643
Blast
[Close]
BLAST of TCONS_00036649 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.224e-22
Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 2 
Query:  221 ITCAICLLVLREPVQAVKCGHRFCEKCIGEFHLQNPGKCPKDWQEI---QVFPDVGKKREILSLKIRCPNFVDGCTWQNELREKEVHLKTCGFVTVPCELDCGEFVLRKNITNHVDTVCPMVS-SCEYKDSGCYFKGTKLQLDNHMAQSANMHLSFEMKSGIFKMKKEFDQKLTAK 736
            + C +C   +REPVQ   CGHRFC+ C+ EF  +   KCP+D   +   +++PD   + ++L L IRC +  +GC W   LR  + HL TC F  +PC   C   + R+++  H+   CP     CE+   GC F G   +    M    +++   E K G   M++   Q  T++
Sbjct:   16 LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEGMCPQESVYC--ENKCGARMMRRLLAQHATSE 187
The following BLAST results are available for this feature:
BLAST of TCONS_00036649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF47.224e-2232.39TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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