TCONS_00036631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036631
Unique NameTCONS_00036631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036631 ID=TCONS_00036631|Name=TCONS_00036631|organism=Clytia hemisphaerica|type=transcript|length=580bp
GTAGGATTGTAGCAAGGATTCTAGGTTCAGACAACAGTGTATTATCTGAA
AGGAATAGACTTTTTCGGAGAAACAACCGTGATAATGGTACTCCCAAAGC
TAAAAAAGTCAAGATTGTGTCAAAAGATGTTTACCTTCTTGACAAAGAGA
CAACCACAATGCCTCGTGGGGCAGATAAATGCAGCTTGCATCAGAGGAAA
CAAGTTATAACAGCGTTTCAGTTAGAAGGGTATCTCACAGAGGAGGAGCT
GTATGATAGACTTGAGCAATGCTTTTCAGAAGTGTTAGACTTTTCAAGTC
CTGTTCCCAGGTATCTATATATACATCACTTTTTGTTACAGACTCATGTc
atcaaactttcatttttactttgTATTCCAAGAACTGTATCAGAGGAACT
CTCTTGCAAGAATTTAACCTTGCAAGAAATTGACTTCTCCAATTAGCAAA
CCTTTTATTTTATTGTGATTTAAAGAAATACTGCAGATATAAATAGGGCT
AGGGGACCCCTGGTTTTGATGGACTTTCATGGTATACGCCACTGAAATCT
AGGCTGAAATCAGTGGTTGACAGATTGGCA
Run BLAST on NCBI

transcript from alignment at sc0001487:28861..29440+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036631 ID=TCONS_00036631|Name=TCONS_00036631|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0001487:28861..29440+ (Clytia hemisphaerica)
GTAGGATTGTAGCAAGGATTCTAGGTTCAGACAACAGTGTATTATCTGAA
AGGAATAGACTTTTTCGGAGAAACAACCGTGATAATGGTACTCCCAAAGC
TAAAAAAGTCAAGATTGTGTCAAAAGATGTTTACCTTCTTGACAAAGAGA
CAACCACAATGCCTCGTGGGGCAGATAAATGCAGCTTGCATCAGAGGAAA
CAAGTTATAACAGCGTTTCAGTTAGAAGGGTATCTCACAGAGGAGGAGCT
GTATGATAGACTTGAGCAATGCTTTTCAGAAGTGTTAGACTTTTCAAGTC
CTGTTCCCAGGTATCTATATATACATCACTTTTTGTTACAGACTCATGTc
atcaaactttcatttttactttgTATTCCAAGAACTGTATCAGAGGAACT
CTCTTGCAAGAATTTAACCTTGCAAGAAATTGACTTCTCCAATTAGCAAA
CCTTTTATTTTATTGTGATTTAAAGAAATACTGCAGATATAAATAGGGCT
AGGGGACCCCTGGTTTTGATGGACTTTCATGGTATACGCCACTGAAATCT
AGGCTGAAATCAGTGGTTGACAGATTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021622XLOC_021622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036631-exon-sc0001487-1491911889:28861..29440TCONS_00036631-exon-sc0001487-1491911889:28861..29440Clytia hemisphaericaexon
TCONS_00036631-exon-sc0001487-1510915933:28861..29440TCONS_00036631-exon-sc0001487-1510915933:28861..29440Clytia hemisphaericaexon
TCONS_00036631-exon-sc0001487-1575043694:28861..29440TCONS_00036631-exon-sc0001487-1575043694:28861..29440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001487supercontigsc0001487:28861..29440 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597823	1.22359	2.71447	3.05665	0	0	0	0	0.169661	0	0	0	0	0.312721	0.535265	0.0741735	0	0	0	0.352067	0	0.379584	0	0.170917	0.308013	0	0	0.139939	0.212278	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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