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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036622 ID=TCONS_00036622|Name=TCONS_00036622|organism=Clytia hemisphaerica|type=transcript|length=2205bp
CGCCTGCATAACAACCATTCAAGCTTGAACATCTTTCTTCATGCTTGTGC
TATCACTATGGAGTTTTGATGACAGGATTCAGAGATACTTCATGTACCAA
CATCCAGAAGGAATAATTCTCAAACTTTTTATTTATCGAGACAAGCCACC
CGACACTTTGCAGCTTCAAAATCCGGCAAGCTCTTCACTTTCAAGTTGTT
GTGATCAAAGATGGACTTGAATCAAGACGAATTGTGAATGAATGGGCTAG
AAATTTCTACTGGTGATAGATGGAGAGTTGTTCTAAACatagaaagttgt
ttttttaccCATTCAACTCTGTGAGGGCccattcacttttttcaaaatca
tgcTGAAATGACGTTGTTGTTAAGATATTTTGCCTCAGTCATCTCGTGTA
GACATCTAAACTCAAGCgatggtttttaaaaattttagtttgACTTTATA
TAATTCACTCATCTCCACATTTCAGGCttgaatttatttaatttgataCA
TGTTTACAAGGAAATCTTATCATGGATCAGCATCTTGCTGCTTTATGTGC
CTTGTGCAGAATTTGCGGGGGAAAAATATCCACAAAAGGAAGTTACAAAT
CACCAAAGCCAGTCACAGTTTTCCAAGATACAATCAACAAATTTGATGCC
TTGAAAGATATCAATCATGATGATGTCGCTGTACATCCCAAATCTGTTTG
TAACAAATGCTACATGAAGTTATACCACCTTAAAGACCGTACATCACAGG
TTTTGAATTGGTCTGTCTTTCAATACAAGCCACACGTTGATGGTGACTTC
TGCTATGTTTGTGTTAATGGAAATCCAACAAGCAGATCAGAACTAGTGAA
AGAGACATTAATTTCAGCTTCTAAGtatggttttaaggtttgtaaAGGTT
TATTATGAACAGTCTTTTTTCATATTTGTTTATGGTGCTTTTAATACCTT
CCAGGATCACAAaatttcaaggggcaaaaattTGATGCCATAAAGCTATA
AAATCTGAGGGCAGGGAATGGCTATTGGCTTTTCTATTGATAGACAACAA
AGTTGGACCAGGTAATAGGTTTGTGAGATGATGACACACATGATCTGTCC
TACGGTGTACTGCGAGTTTGATCATGAGTGAGAGACTGGCAGAGACtgaa
cttttaaaaattcagCCCATTTTTCGACTCATATTTTGGGGCTGAAAATG
ACGCGAACACAACCTATTTGTGATCTAGGCCTAGCCgtaaaatttggaga
ttttgcTATGAACCATGGGAGGAATCTTTAggttggatttcattttttat
ctggttatccctttaaaaTTCATTGTCCCTCATCTTAAGTTCATGTGTGT
TTTATTTGAATATATATTTACTCTATTTTAACCAATCTTCTGTTATTTTA
TAGTTTGTGTATTGTAACATTCATAACTCGACAAATTTCAACAGTATGAC
CAGTTGGATATTATGGCAATAGATAATAAAAAAGCTGCTAAGAGCTGGGA
AATAGTTGTTATGGGTGTAGTGGTTCATCAGAGTCAGTTAAAATCTTGGA
AATTTTGGATCATATAGGTAACTACACTATCAAAATTCATGGTAAGCCTA
TTAAAACTGAAACCCTCACCAAACTTCATTTTCCAAATATCCTCACAACA
ATAAACATCAACAGTGTACTCAAAACTCTACAGCAATCTGTAATATGCTG
GGGTAATGAAGATTTTGATGATCTGGTGTCTAAGAAGCTAGGGGATTTGA
ATGActttcaatttttatcaattgATAACACTGTCACGAGTCATTTAGAG
ACATCTGATGGCAAAACTATGTCTGACATGAAGATAATCAGACATGAAAA
TTGTGACATCTTTATTGACTCAAGTAAaggtttggaaaatatttttttct
tatttctatAAACTCGTACAGTTTTGAGGAAACCGGAAGTCAAACTGCCA
AgccttttaaaaacattttgtatATAATTGTATCTGCCTTCATTAAACAT
ATTTTAGCAAGAACTTTGTCNtgaattattccattctgttgtttccttta
agttaaatatggtttcactcatcttattagcagactttgtcagtgtttac
aaagattttgtagtcaaccacgtgaaggtgcaaaataatccattgatcta
ggggctactggacagtatgatggcaactaacctgaaagtatataatgaag
aGGGA Run BLAST on NCBI transcript from alignment at sc0001487:6994..9432+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036622 ID=TCONS_00036622|Name=TCONS_00036622|organism=Clytia hemisphaerica|type=transcript|length=2439bp|location=Sequence derived from alignment at sc0001487:6994..9432+ (Clytia hemisphaerica)
CGCCTGCATAACAACCATTCAAGCTTGAACATCTTTCTTCATGCTTGTGC
TATCACTATGGAGTTTTGATGACAGGATTCAGAGATACTTCATGTACCAA
CATCCAGAAGGAATAATTCTCAAACTTTTTATTTATCGAGACAAGCCACC
CGACACTTTGCAGCTTCAAAATCCGGCAAGCTCTTCACTTTCAAGTTGTT
GTGATCAAAGATGGACTTGAATCAAGACGAATTGTGAATGAATGGGCTAG
AAATTTCTACTGGTGATAGATGGAGAGTTGTTCTAAACatagaaagttgt
ttttttaccCATTCAACTCTGTGAGGGCccattcacttttttcaaaatca
tgcTGAAATGACGTTGTTGTTAAGATATTTTGCCTCAGTCATCTCGTGTA
GACATCTAAACTCAAGCgatggtttttaaaaattttagtttgACTTTATA
TAATTCACTCATCTCCACATTTCAGGCttgaatttatttaatttgataCA
TGTTTACAAGGAAATCTTATCATGGATCAGCATCTTGCTGCTTTATGTGC
CTTGTGCAGAATTTGCGGGGGAAAAATATCCACAAAAGGAAGTTACAAAT
CACCAAAGCCAGTCACAGTTTTCCAAGATACAATCAACAAATTTGATGCC
TTGAAAGATATCAATCATGATGATGTCGCTGTACATCCCAAATCTGTTTG
TAACAAATGCTACATGAAGTTATACCACCTTAAAGACCGTACATCACAGG
TTTTGAATTGGTCTGTCTTTCAATACAAGCCACACGTTGATGGTGACTTC
TGCTATGTTTGTGTTAATGGAAATCCAACAAGCAGATCAGAACTAGTGAA
AGAGACATTAATTTCAGCTTCTAAGtatggttttaaggtttgtaaAGGTT
TATTATGAACAGTCTTTTTTCATATTTGTTTATGGTGCTTTTAATACCTT
CCAGGATCACAAaatttcaaggggcaaaaattTGATGCCATAAAGCTATA
AAATCTGAGGGCAGGGAATGGCTATTGGCTTTTCTATTGATAGACAACAA
AGTTGGACCAGGTAATAGGTTTGTGAGATGATGACACACATGATCTGTCC
TACGGTGTACTGCGAGTTTGATCATGAGTGAGAGACTGGCAGAGACtgaa
cttttaaaaattcagCCCATTTTTCGACTCATATTTTGGGGCTGAAAATG
ACGCGAACACAACCTATTTGTGATCTAGGCCTAGCCgtaaaatttggaga
ttttgcTATGAACCATGGGAGGAATCTTTAggttggatttcattttttat
ctggttatccctttaaaaTTCATTGTCCCTCATCTTAAGTTCATGTGTGT
TTTATTTGAATATATATTTACTCTATTTTAACCAATCTTCTGTTATTTTA
TAGTTTGTGTATTGTAACATTCATAACTCGACAAATTTCAACAGTATGAC
CAGTTGGATATTATGGCAATAGATAATAAAAAAGCTGCTAAGTATACTAA
ATTGCTATTTACCAAAACCAAACAATCTTGTTgttatttcaatttctttt
ttatacgTCTAGGATTTTTGTTGTATTGATTTATTGACACTAAAACAGTC
GAGagtatttcttttgtttgtttcaCATATTAAACATTATTCTTAATAAA
CCATATAGATTCATGtttttttcatgcatttttaATACATCTTTCTAAAT
GTATATCATCATCCTTTTTTTGTAGGAGCTGGGAAATAGTTGTTATGGGT
GTAGTGGTTCATCAGAGTCAGTTAAAATCTTGGAAATTTTGGATCATATA
GGTAACTACACTATCAAAATTCATGGTAAGCCTATTAAAACTGAAACCCT
CACCAAACTTCATTTTCCAAATATCCTCACAACAATAAACATCAACAGTG
TACTCAAAACTCTACAGCAATCTGTAATATGCTGGGGTAATGAAGATTTT
GATGATCTGGTGTCTAAGAAGCTAGGGGATTTGAATGActttcaattttt
atcaattgATAACACTGTCACGAGTCATTTAGAGACATCTGATGGCAAAA
CTATGTCTGACATGAAGATAATCAGACATGAAAATTGTGACATCTTTATT
GACTCAAGTAAaggtttggaaaatatttttttcttatttctatAAACTCG
TACAGTTTTGAGGAAACCGGAAGTCAAACTGCCAAgccttttaaaaacat
tttgtatATAATTGTATCTGCCTTCATTAAACATATTTTAGCAAGAACTT
TGTCNtgaattattccattctgttgtttcctttaagttaaatatggtttc
actcatcttattagcagactttgtcagtgtttacaaagattttgtagtca
accacgtgaaggtgcaaaataatccattgatctaggggctactggacagt
atgatggcaactaacctgaaagtatataatgaagaGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036622-exon-sc0001487-1491911889:6994..8484 | TCONS_00036622-exon-sc0001487-1491911889:6994..8484 | Clytia hemisphaerica | exon |
| TCONS_00036622-exon-sc0001487-1510915933:6994..8484 | TCONS_00036622-exon-sc0001487-1510915933:6994..8484 | Clytia hemisphaerica | exon |
| TCONS_00036622-exon-sc0001487-1575043694:6994..8484 | TCONS_00036622-exon-sc0001487-1575043694:6994..8484 | Clytia hemisphaerica | exon |
| TCONS_00036622-exon-sc0001487-1491911889:8719..9432 | TCONS_00036622-exon-sc0001487-1491911889:8719..9432 | Clytia hemisphaerica | exon |
| TCONS_00036622-exon-sc0001487-1510915933:8719..9432 | TCONS_00036622-exon-sc0001487-1510915933:8719..9432 | Clytia hemisphaerica | exon |
| TCONS_00036622-exon-sc0001487-1575043694:8719..9432 | TCONS_00036622-exon-sc0001487-1575043694:8719..9432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001487 | supercontig | sc0001487:6994..9432 + |
Blast
The following BLAST results are available for this feature:
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