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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036621 ID=TCONS_00036621|Name=TCONS_00036621|organism=Clytia hemisphaerica|type=transcript|length=1943bp
aaaattttttttcccgacACCGCCTGCATAACAACCATTCAAGCTTGAAC
ATCTTTCTTCATGCTTGTGCTATCACTATGGAGTTTTGATGACAGGATTC
AGAGATACTTCATGTACCAACATCCAGAAGGAATAATTCTCAAACTTTTT
ATTTATCGAGACAAGCCACCCGACACTTTGCAGCTTCAAAATCCGGCAAG
CTCTTCACTTTCAAGTTGTTGTGATCAAAGATGGACTTGAATCAAGACGA
ATTGTGAATGAATGGGCTAGAAATTTCTACTGGTGATAGATGGAGAGTTG
TTCTAAACatagaaagttgtttttttaccCATTCAACTCTGTGAGGGCcc
attcacttttttcaaaatcatgcTGAAATGACGTTGTTGTTAAGATATTT
TGCCTCAGTCATCTCGTGTAGACATCTAAACTCAAGCgatggtttttaaa
aattttagtttgACTTTATATAATTCACTCATCTCCACATTTCAGGCttg
aatttatttaatttgataCATGTTTACAAGGAAATCTTATCATGGATCAG
CATCTTGCTGCTTTATGTGCCTTGTGCAGAATTTGCGGGGGAAAAATATC
CACAAAAGGAAGTTACAAATCACCAAAGCCAGTCACAGTTTTCCAAGATA
CAATCAACAAATTTGATGCCTTGAAAGATATCAATCATGATGATGTCGCT
GTACATCCCAAATCTGTTTGTAACAAATGCTACATGAAGTTATACCACCT
TAAAGACCGTACATCACAGGTTTTGAATTGGTCTGTCTTTCAATACAAGC
CACACGTTGATGGTGACTTCTGCTATGTTTGTGTTAATGGAAATCCAACA
AGCAGATCAGAACTAGTGAAAGAGACATTAATTTCAGCTTCTAAGtatgg
ttttaagTTTGTGTATTGTAACATTCATAACTCGACAAATTTCAACAGTA
TGACCAGTTGGATATTATGGCAATAGATAATAAAAAAGCTGCTAAGTATA
CTAAATTGCTATTTACCAAAACCAAACAATCTTGTTgttatttcaatttc
ttttttatacgTCTAGGATTTTTGTTGTATTGATTTATTGACACTAAAAC
AGTCGAGagtatttcttttgtttgtttcaCATATTAAACATTATTCTTAA
TAAACCATATAGATTCATGtttttttcatgcatttttaATACATCTTTCT
AAATGTATATCATCATCCTTTTTTTGTAGGAGCTGGGAAATAGTTGTTAT
GGGTGTAGTGGTTCATCAGAGTCAGTTAAAATCTTGGAAATTTTGGATCA
TATAGGTAACTACACTATCAAAATTCATGGTAAGCCTATTAAAACTGAAA
CCCTCACCAAACTTCATTTTCCAAATATCCTCACAACAATAAACATCAAC
AGTGTACTCAAAACTCTACAGCAATCTGTAATATGCTGGGGTAATGAAGA
TTTTGATGATCTGGTGTCTAAGAAGCTAGGGGATTTGAATGActttcaat
ttttatcaattgATAACACTGTCACGAGTCATTTAGAGACATCTGATGGC
AAAACTATGTCTGACATGAAGATAATCAGACATGAAAATTGTGACATCTT
TATTGACTCAAGTAAaggtttggaaaatatttttttcttatttctatAAA
CTCGTACAGTTTTGAGGAAACCGGAAGTCAAACTGCCAAgccttttaaaa
acattttgtatATAATTGTATCTGCCTTCATTAAACATATTTTAGCAAGA
ACTTTGTCNtgaattattccattctgttgtttcctttaagttaaatatgg
tttcactcatcttattagcagactttgtcagtgtttacaaagattttgta
gtcaaccacgtgaaggtgcaaaataatccattgatctaggggctactgga
cagtatgatggcaactaacctgaaagtatataatgaagaGGGA Run BLAST on NCBI transcript from alignment at sc0001487:6974..9432+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036621 ID=TCONS_00036621|Name=TCONS_00036621|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at sc0001487:6974..9432+ (Clytia hemisphaerica)
aaaattttttttcccgacACCGCCTGCATAACAACCATTCAAGCTTGAAC
ATCTTTCTTCATGCTTGTGCTATCACTATGGAGTTTTGATGACAGGATTC
AGAGATACTTCATGTACCAACATCCAGAAGGAATAATTCTCAAACTTTTT
ATTTATCGAGACAAGCCACCCGACACTTTGCAGCTTCAAAATCCGGCAAG
CTCTTCACTTTCAAGTTGTTGTGATCAAAGATGGACTTGAATCAAGACGA
ATTGTGAATGAATGGGCTAGAAATTTCTACTGGTGATAGATGGAGAGTTG
TTCTAAACatagaaagttgtttttttaccCATTCAACTCTGTGAGGGCcc
attcacttttttcaaaatcatgcTGAAATGACGTTGTTGTTAAGATATTT
TGCCTCAGTCATCTCGTGTAGACATCTAAACTCAAGCgatggtttttaaa
aattttagtttgACTTTATATAATTCACTCATCTCCACATTTCAGGCttg
aatttatttaatttgataCATGTTTACAAGGAAATCTTATCATGGATCAG
CATCTTGCTGCTTTATGTGCCTTGTGCAGAATTTGCGGGGGAAAAATATC
CACAAAAGGAAGTTACAAATCACCAAAGCCAGTCACAGTTTTCCAAGATA
CAATCAACAAATTTGATGCCTTGAAAGATATCAATCATGATGATGTCGCT
GTACATCCCAAATCTGTTTGTAACAAATGCTACATGAAGTTATACCACCT
TAAAGACCGTACATCACAGGTTTTGAATTGGTCTGTCTTTCAATACAAGC
CACACGTTGATGGTGACTTCTGCTATGTTTGTGTTAATGGAAATCCAACA
AGCAGATCAGAACTAGTGAAAGAGACATTAATTTCAGCTTCTAAGtatgg
ttttaaggtttgtaaAGGTTTATTATGAACAGTCTTTTTTCATATTTGTT
TATGGTGCTTTTAATACCTTCCAGGATCACAAaatttcaaggggcaaaaa
ttTGATGCCATAAAGCTATAAAATCTGAGGGCAGGGAATGGCTATTGGCT
TTTCTATTGATAGACAACAAAGTTGGACCAGGTAATAGGTTTGTGAGATG
ATGACACACATGATCTGTCCTACGGTGTACTGCGAGTTTGATCATGAGTG
AGAGACTGGCAGAGACtgaacttttaaaaattcagCCCATTTTTCGACTC
ATATTTTGGGGCTGAAAATGACGCGAACACAACCTATTTGTGATCTAGGC
CTAGCCgtaaaatttggagattttgcTATGAACCATGGGAGGAATCTTTA
ggttggatttcattttttatctggttatccctttaaaaTTCATTGTCCCT
CATCTTAAGTTCATGTGTGTTTTATTTGAATATATATTTACTCTATTTTA
ACCAATCTTCTGTTATTTTATAGTTTGTGTATTGTAACATTCATAACTCG
ACAAATTTCAACAGTATGACCAGTTGGATATTATGGCAATAGATAATAAA
AAAGCTGCTAAGTATACTAAATTGCTATTTACCAAAACCAAACAATCTTG
TTgttatttcaatttcttttttatacgTCTAGGATTTTTGTTGTATTGAT
TTATTGACACTAAAACAGTCGAGagtatttcttttgtttgtttcaCATAT
TAAACATTATTCTTAATAAACCATATAGATTCATGtttttttcatgcatt
tttaATACATCTTTCTAAATGTATATCATCATCCTTTTTTTGTAGGAGCT
GGGAAATAGTTGTTATGGGTGTAGTGGTTCATCAGAGTCAGTTAAAATCT
TGGAAATTTTGGATCATATAGGTAACTACACTATCAAAATTCATGGTAAG
CCTATTAAAACTGAAACCCTCACCAAACTTCATTTTCCAAATATCCTCAC
AACAATAAACATCAACAGTGTACTCAAAACTCTACAGCAATCTGTAATAT
GCTGGGGTAATGAAGATTTTGATGATCTGGTGTCTAAGAAGCTAGGGGAT
TTGAATGActttcaatttttatcaattgATAACACTGTCACGAGTCATTT
AGAGACATCTGATGGCAAAACTATGTCTGACATGAAGATAATCAGACATG
AAAATTGTGACATCTTTATTGACTCAAGTAAaggtttggaaaatattttt
ttcttatttctatAAACTCGTACAGTTTTGAGGAAACCGGAAGTCAAACT
GCCAAgccttttaaaaacattttgtatATAATTGTATCTGCCTTCATTAA
ACATATTTTAGCAAGAACTTTGTCNtgaattattccattctgttgtttcc
tttaagttaaatatggtttcactcatcttattagcagactttgtcagtgt
ttacaaagattttgtagtcaaccacgtgaaggtgcaaaataatccattga
tctaggggctactggacagtatgatggcaactaacctgaaagtatataat
gaagaGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036621-exon-sc0001487-1491911889:6974..7880 | TCONS_00036621-exon-sc0001487-1491911889:6974..7880 | Clytia hemisphaerica | exon |
| TCONS_00036621-exon-sc0001487-1510915933:6974..7880 | TCONS_00036621-exon-sc0001487-1510915933:6974..7880 | Clytia hemisphaerica | exon |
| TCONS_00036621-exon-sc0001487-1575043694:6974..7880 | TCONS_00036621-exon-sc0001487-1575043694:6974..7880 | Clytia hemisphaerica | exon |
| TCONS_00036621-exon-sc0001487-1491911889:8397..9432 | TCONS_00036621-exon-sc0001487-1491911889:8397..9432 | Clytia hemisphaerica | exon |
| TCONS_00036621-exon-sc0001487-1510915933:8397..9432 | TCONS_00036621-exon-sc0001487-1510915933:8397..9432 | Clytia hemisphaerica | exon |
| TCONS_00036621-exon-sc0001487-1575043694:8397..9432 | TCONS_00036621-exon-sc0001487-1575043694:8397..9432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001487 | supercontig | sc0001487:6974..9432 + |
Blast
The following BLAST results are available for this feature:
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