|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036620 ID=TCONS_00036620|Name=TCONS_00036620|organism=Clytia hemisphaerica|type=transcript|length=2497bp
cgccaaaatttgaattttcgagattttcaaCATGgcgtcgaaaatttttt
ttcccgacACCGCCTGCATAACAACCATTCAAGCTTGAACATCTTTCTTC
ATGCTTGTGCTATCACTATGGAGTTTTGATGACAGGATTCAGAGATACTT
CATGTACCAACATCCAGAAGGAATAATTCTCAAACTTTTTATTTATCGAG
ACAAGCCACCCGACACTTTGCAGCTTCAAAATCCGGCAAGCTCTTCACTT
TCAAGTTGTTGTGATCAAAGATGGACTTGAATCAAGACGAATTGTGAATG
AATGGGCTAGAAATTTCTACTGGTGATAGATGGAGAGTTGTTCTAAACat
agaaagttgtttttttaccCATTCAACTCTGTGAGGGCccattcactttt
ttcaaaatcatgcTGAAATGACGTTGTTGTTAAGATATTTTGCCTCAGTC
ATCTCGTGTAGACATCTAAACTCAAGCgatggtttttaaaaattttagtt
tgACTTTATATAATTCACTCATCTCCACATTTCAGGCttgaatttattta
atttgataCATGTTTACAAGGAAATCTTATCATGGATCAGCATCTTGCTG
CTTTATGTGCCTTGTGCAGAATTTGCGGGGGAAAAATATCCACAAAAGGA
AGTTACAAATCACCAAAGCCAGTCACAGTTTTCCAAGATACAATCAACAA
ATTTGATGCCTTGAAAGATATCAATCATGATGATGTCGCTGTACATCCCA
AATCTGTTTGTAACAAATGCTACATGAAGTTATACCACCTTAAAGACCGT
ACATCACAGGTTTTGAATTGGTCTGTCTTTCAATACAAGCCACACGTTGA
TGGTGACTTCTGCTATGTTTGTGTTAATGGAAATCCAACAAGCAGATCAG
AACTAGTGAAAGAGACATTAATTTCAGCTTCTAAGtatggttttaaggtt
tgtaaAGGTTTATTATGAACAGTCTTTTTTCATATTTGTTTATGGTGCTT
TTAATACCTTCCAGGATCACAAaatttcaaggggcaaaaattTGATGCCA
TAAAGCTATAAAATCTGAGGGCAGGGAATGGCTATTGGCTTTTCTATTGA
TAGACAACAAAGTTGGACCAGGTAATAGGTTTGTGAGATGATGACACACA
TGATCTGTCCTACGGTGTACTGCGAGTTTGATCATGAGTGAGAGACTGGC
AGAGACtgaacttttaaaaattcagCCCATTTTTCGACTCATATTTTGGG
GCTGAAAATGACGCGAACACAACCTATTTGTGATCTAGGCCTAGCCgtaa
aatttggagattttgcTATGAACCATGGGAGGAATCTTTAggttggattt
cattttttatctggttatccctttaaaaTTCATTGTCCCTCATCTTAAGT
TCATGTGTGTTTTATTTGAATATATATTTACTCTATTTTAACCAATCTTC
TGTTATTTTATAGTTTGTGTATTGTAACATTCATAACTCGACAAATTTCA
ACAGTATGACCAGTTGGATATTATGGCAATAGATAATAAAAAAGCTGCTA
AGTATACTAAATTGCTATTTACCAAAACCAAACAATCTTGTTgttatttc
aatttcttttttatacgTCTAGGATTTTTGTTGTATTGATTTATTGACAC
TAAAACAGTCGAGagtatttcttttgtttgtttcaCATATTAAACATTAT
TCTTAATAAACCATATAGATTCATGtttttttcatgcatttttaATACAT
CTTTCTAAATGTATATCATCATCCTTTTTTTGTAGGAGCTGGGAAATAGT
TGTTATGGGTGTAGTGGTTCATCAGAGTCAGTTAAAATCTTGGAAATTTT
GGATCATATAGGTAACTACACTATCAAAATTCATGGTAAGCCTATTAAAA
CTGAAACCCTCACCAAACTTCATTTTCCAAATATCCTCACAACAATAAAC
ATCAACAGTGTACTCAAAACTCTACAGCAATCTGTAATATGCTGGGGTAA
TGAAGATTTTGATGATCTGGTGTCTAAGAAGCTAGGGGATTTGAATGAct
ttcaatttttatcaattgATAACACTGTCACGAGTCATTTAGAGACATCT
GATGGCAAAACTATGTCTGACATGAAGATAATCAGACATGAAAATTGTGA
CATCTTTATTGACTCAAGTAAaggtttggaaaatatttttttcttatttc
tatAAACTCGTACAGTTTTGAGGAAACCGGAAGTCAAACTGCCAAgcctt
ttaaaaacattttgtatATAATTGTATCTGCCTTCATTAAACATATTTTA
GCAAGAACTTTGTCNtgaattattccattctgttgtttcctttaagttaa
atatggtttcactcatcttattagcagactttgtcagtgtttacaaagat
tttgtagtcaaccacgtgaaggtgcaaaataatccattgatctaggggct
actggacagtatgatggcaactaacctgaaagtatataatgaagaGG Run BLAST on NCBI transcript from alignment at sc0001487:6934..9430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036620 ID=TCONS_00036620|Name=TCONS_00036620|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at sc0001487:6934..9430+ (Clytia hemisphaerica)
cgccaaaatttgaattttcgagattttcaaCATGgcgtcgaaaatttttt
ttcccgacACCGCCTGCATAACAACCATTCAAGCTTGAACATCTTTCTTC
ATGCTTGTGCTATCACTATGGAGTTTTGATGACAGGATTCAGAGATACTT
CATGTACCAACATCCAGAAGGAATAATTCTCAAACTTTTTATTTATCGAG
ACAAGCCACCCGACACTTTGCAGCTTCAAAATCCGGCAAGCTCTTCACTT
TCAAGTTGTTGTGATCAAAGATGGACTTGAATCAAGACGAATTGTGAATG
AATGGGCTAGAAATTTCTACTGGTGATAGATGGAGAGTTGTTCTAAACat
agaaagttgtttttttaccCATTCAACTCTGTGAGGGCccattcactttt
ttcaaaatcatgcTGAAATGACGTTGTTGTTAAGATATTTTGCCTCAGTC
ATCTCGTGTAGACATCTAAACTCAAGCgatggtttttaaaaattttagtt
tgACTTTATATAATTCACTCATCTCCACATTTCAGGCttgaatttattta
atttgataCATGTTTACAAGGAAATCTTATCATGGATCAGCATCTTGCTG
CTTTATGTGCCTTGTGCAGAATTTGCGGGGGAAAAATATCCACAAAAGGA
AGTTACAAATCACCAAAGCCAGTCACAGTTTTCCAAGATACAATCAACAA
ATTTGATGCCTTGAAAGATATCAATCATGATGATGTCGCTGTACATCCCA
AATCTGTTTGTAACAAATGCTACATGAAGTTATACCACCTTAAAGACCGT
ACATCACAGGTTTTGAATTGGTCTGTCTTTCAATACAAGCCACACGTTGA
TGGTGACTTCTGCTATGTTTGTGTTAATGGAAATCCAACAAGCAGATCAG
AACTAGTGAAAGAGACATTAATTTCAGCTTCTAAGtatggttttaaggtt
tgtaaAGGTTTATTATGAACAGTCTTTTTTCATATTTGTTTATGGTGCTT
TTAATACCTTCCAGGATCACAAaatttcaaggggcaaaaattTGATGCCA
TAAAGCTATAAAATCTGAGGGCAGGGAATGGCTATTGGCTTTTCTATTGA
TAGACAACAAAGTTGGACCAGGTAATAGGTTTGTGAGATGATGACACACA
TGATCTGTCCTACGGTGTACTGCGAGTTTGATCATGAGTGAGAGACTGGC
AGAGACtgaacttttaaaaattcagCCCATTTTTCGACTCATATTTTGGG
GCTGAAAATGACGCGAACACAACCTATTTGTGATCTAGGCCTAGCCgtaa
aatttggagattttgcTATGAACCATGGGAGGAATCTTTAggttggattt
cattttttatctggttatccctttaaaaTTCATTGTCCCTCATCTTAAGT
TCATGTGTGTTTTATTTGAATATATATTTACTCTATTTTAACCAATCTTC
TGTTATTTTATAGTTTGTGTATTGTAACATTCATAACTCGACAAATTTCA
ACAGTATGACCAGTTGGATATTATGGCAATAGATAATAAAAAAGCTGCTA
AGTATACTAAATTGCTATTTACCAAAACCAAACAATCTTGTTgttatttc
aatttcttttttatacgTCTAGGATTTTTGTTGTATTGATTTATTGACAC
TAAAACAGTCGAGagtatttcttttgtttgtttcaCATATTAAACATTAT
TCTTAATAAACCATATAGATTCATGtttttttcatgcatttttaATACAT
CTTTCTAAATGTATATCATCATCCTTTTTTTGTAGGAGCTGGGAAATAGT
TGTTATGGGTGTAGTGGTTCATCAGAGTCAGTTAAAATCTTGGAAATTTT
GGATCATATAGGTAACTACACTATCAAAATTCATGGTAAGCCTATTAAAA
CTGAAACCCTCACCAAACTTCATTTTCCAAATATCCTCACAACAATAAAC
ATCAACAGTGTACTCAAAACTCTACAGCAATCTGTAATATGCTGGGGTAA
TGAAGATTTTGATGATCTGGTGTCTAAGAAGCTAGGGGATTTGAATGAct
ttcaatttttatcaattgATAACACTGTCACGAGTCATTTAGAGACATCT
GATGGCAAAACTATGTCTGACATGAAGATAATCAGACATGAAAATTGTGA
CATCTTTATTGACTCAAGTAAaggtttggaaaatatttttttcttatttc
tatAAACTCGTACAGTTTTGAGGAAACCGGAAGTCAAACTGCCAAgcctt
ttaaaaacattttgtatATAATTGTATCTGCCTTCATTAAACATATTTTA
GCAAGAACTTTGTCNtgaattattccattctgttgtttcctttaagttaa
atatggtttcactcatcttattagcagactttgtcagtgtttacaaagat
tttgtagtcaaccacgtgaaggtgcaaaataatccattgatctaggggct
actggacagtatgatggcaactaacctgaaagtatataatgaagaGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036620-exon-sc0001487-1491911889:6934..9430 | TCONS_00036620-exon-sc0001487-1491911889:6934..9430 | Clytia hemisphaerica | exon |
| TCONS_00036620-exon-sc0001487-1510915933:6934..9430 | TCONS_00036620-exon-sc0001487-1510915933:6934..9430 | Clytia hemisphaerica | exon |
| TCONS_00036620-exon-sc0001487-1575043694:6934..9430 | TCONS_00036620-exon-sc0001487-1575043694:6934..9430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001487 | supercontig | sc0001487:6934..9430 + |
Blast
The following BLAST results are available for this feature:
|
