TCONS_00036619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036619
Unique NameTCONS_00036619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036619 ID=TCONS_00036619|Name=TCONS_00036619|organism=Clytia hemisphaerica|type=transcript|length=1668bp
CAAACCTATGGAAGAGCAAGTCATTGTTAAAAAAACAAAGCCGCGCTTTG
TCCTTTGTGCAGGGACCTCGTTGCcgccaaaatttgaattttcgagattt
tcaaCATGgcgtcgaaaattttttttcccgacACCGCCTGCATAACAACC
ATTCAAGCTTGAACATCTTTCTTCATGCTTGTGCTATCACTATGGAGTTT
TGATGACAGGATTCAGAGATACTTCATGTACCAACATCCAGAAGGAATAA
TTCTCAAACTTTTTATTTATCGAGACAAGCCACCCGACACTTTGCAGCTT
CAAAATCCGGCAAGCTCTTCACTTTCAAGTTGTTGTGATCAAAGATGGAC
TTGAATCAAGACGAATTGTGAATGAATGGGCTAGAAATTTCTACTGGTGA
TAGATGGAGAGTTGTTCTAAACatagaaagttgtttttttaccCATTCAA
CTCTGCttgaatttatttaatttgataCATGTTTACAAGGAAATCTTATC
ATGGATCAGCATCTTGCTGCTTTATGTGCCTTGTGCAGAATTTGCGGGGG
AAAAATATCCACAAAAGGAAGTTACAAATCACCAAAGCCAGTCACAGTTT
TCCAAGATACAATCAACAAATTTGATGCCTTGAAAGATATCAATCATGAT
GATGTCGCTGTACATCCCAAATCTGTTTGTAACAAATGCTACATGAAGTT
ATACCACCTTAAAGACCGTACATCACAGGTTTTGAATTGGTCTGTCTTTC
AATACAAGCCACACGTTGATGGTGACTTCTGCTATGTTTGTGTTAATGGA
AATCCAACAAGCAGATCAGAACTAGTGAAAGAGACATTAATTTCAGCTTC
TAAGtatggttttaagTTTGTGTATTGTAACATTCATAACTCGACAAATT
TCAACAGTATGACCAGTTGGATATTATGGCAATAGATAATAAAAAAGCTG
CTAAGAGCTGGGAAATAGTTGTTATGGGTGTAGTGGTTCATCAGAGTCAG
TTAAAATCTTGGAAATTTTGGATCATATAGGTAACTACACTATCAAAATT
CATGGTAAGCCTATTAAAACTGAAACCCTCACCAAACTTCATTTTCCAAA
TATCCTCACAACAATAAACATCAACAGTGTACTCAAAACTCTACAGCAAT
CTGTAATATGCTGGGGTAATGAAGATTTTGATGATCTGGTGTCTAAGAAG
CTAGGGGATTTGAATGActttcaatttttatcaattgATAACACTGTCAC
GAGTCATTTAGAGACATCTGATGGCAAAACTATGTCTGACATGAAGATAA
TCAGACATGAAAATTGTGACATCTTTATTGACTCAAGTAAaggtttggaa
aatatttttttcttatttctatAAACTCGTACAGTTTTGAGGAAACCGGA
AGTCAAACTGCCAAgccttttaaaaacattttgtatATAATTGTATCTGC
CTTCATTAAACATATTTTAGCAAGAACTTTGTCNtgaattattccattct
gttgtttcctttaagttaaatatggtttcactcatcttattagcagactt
tgtcagtgtttacaaagattttgtagtcaaccacgtgaaggtgcaaaata
atccattgatctaggggctactggacagtatgatggcaactaacctgaaa
gtatataatgaagaGGGA
Run BLAST on NCBI

protein sequence of TCONS_00036619-protein

>TCONS_00036619-protein ID=TCONS_00036619-protein|Name=TCONS_00036619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MDQHLAALCALCRICGGKISTKGSYKSPKPVTVFQDTINKFDALKDINHD
DVAVHPKSVCNKCYMKLYHLKDRTSQVLNWSVFQYKPHVDGDFCYVCVNG
NPTSRSELVKETLISASKYGFKFVYCNIHNSTNFNSMTSWILWQ
Run BLAST on NCBI

transcript from alignment at sc0001487:6860..9432+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036619 ID=TCONS_00036619|Name=TCONS_00036619|organism=Clytia hemisphaerica|type=transcript|length=2573bp|location=Sequence derived from alignment at sc0001487:6860..9432+ (Clytia hemisphaerica)
CAAACCTATGGAAGAGCAAGTCATTGTTAAAAAAACAAAGCCGCGCTTTG
TCCTTTGTGCAGGGACCTCGTTGCcgccaaaatttgaattttcgagattt
tcaaCATGgcgtcgaaaattttttttcccgacACCGCCTGCATAACAACC
ATTCAAGCTTGAACATCTTTCTTCATGCTTGTGCTATCACTATGGAGTTT
TGATGACAGGATTCAGAGATACTTCATGTACCAACATCCAGAAGGAATAA
TTCTCAAACTTTTTATTTATCGAGACAAGCCACCCGACACTTTGCAGCTT
CAAAATCCGGCAAGCTCTTCACTTTCAAGTTGTTGTGATCAAAGATGGAC
TTGAATCAAGACGAATTGTGAATGAATGGGCTAGAAATTTCTACTGGTGA
TAGATGGAGAGTTGTTCTAAACatagaaagttgtttttttaccCATTCAA
CTCTGTGAGGGCccattcacttttttcaaaatcatgcTGAAATGACGTTG
TTGTTAAGATATTTTGCCTCAGTCATCTCGTGTAGACATCTAAACTCAAG
CgatggtttttaaaaattttagtttgACTTTATATAATTCACTCATCTCC
ACATTTCAGGCttgaatttatttaatttgataCATGTTTACAAGGAAATC
TTATCATGGATCAGCATCTTGCTGCTTTATGTGCCTTGTGCAGAATTTGC
GGGGGAAAAATATCCACAAAAGGAAGTTACAAATCACCAAAGCCAGTCAC
AGTTTTCCAAGATACAATCAACAAATTTGATGCCTTGAAAGATATCAATC
ATGATGATGTCGCTGTACATCCCAAATCTGTTTGTAACAAATGCTACATG
AAGTTATACCACCTTAAAGACCGTACATCACAGGTTTTGAATTGGTCTGT
CTTTCAATACAAGCCACACGTTGATGGTGACTTCTGCTATGTTTGTGTTA
ATGGAAATCCAACAAGCAGATCAGAACTAGTGAAAGAGACATTAATTTCA
GCTTCTAAGtatggttttaaggtttgtaaAGGTTTATTATGAACAGTCTT
TTTTCATATTTGTTTATGGTGCTTTTAATACCTTCCAGGATCACAAaatt
tcaaggggcaaaaattTGATGCCATAAAGCTATAAAATCTGAGGGCAGGG
AATGGCTATTGGCTTTTCTATTGATAGACAACAAAGTTGGACCAGGTAAT
AGGTTTGTGAGATGATGACACACATGATCTGTCCTACGGTGTACTGCGAG
TTTGATCATGAGTGAGAGACTGGCAGAGACtgaacttttaaaaattcagC
CCATTTTTCGACTCATATTTTGGGGCTGAAAATGACGCGAACACAACCTA
TTTGTGATCTAGGCCTAGCCgtaaaatttggagattttgcTATGAACCAT
GGGAGGAATCTTTAggttggatttcattttttatctggttatccctttaa
aaTTCATTGTCCCTCATCTTAAGTTCATGTGTGTTTTATTTGAATATATA
TTTACTCTATTTTAACCAATCTTCTGTTATTTTATAGTTTGTGTATTGTA
ACATTCATAACTCGACAAATTTCAACAGTATGACCAGTTGGATATTATGG
CAATAGATAATAAAAAAGCTGCTAAGTATACTAAATTGCTATTTACCAAA
ACCAAACAATCTTGTTgttatttcaatttcttttttatacgTCTAGGATT
TTTGTTGTATTGATTTATTGACACTAAAACAGTCGAGagtatttcttttg
tttgtttcaCATATTAAACATTATTCTTAATAAACCATATAGATTCATGt
ttttttcatgcatttttaATACATCTTTCTAAATGTATATCATCATCCTT
TTTTTGTAGGAGCTGGGAAATAGTTGTTATGGGTGTAGTGGTTCATCAGA
GTCAGTTAAAATCTTGGAAATTTTGGATCATATAGGTAACTACACTATCA
AAATTCATGGTAAGCCTATTAAAACTGAAACCCTCACCAAACTTCATTTT
CCAAATATCCTCACAACAATAAACATCAACAGTGTACTCAAAACTCTACA
GCAATCTGTAATATGCTGGGGTAATGAAGATTTTGATGATCTGGTGTCTA
AGAAGCTAGGGGATTTGAATGActttcaatttttatcaattgATAACACT
GTCACGAGTCATTTAGAGACATCTGATGGCAAAACTATGTCTGACATGAA
GATAATCAGACATGAAAATTGTGACATCTTTATTGACTCAAGTAAaggtt
tggaaaatatttttttcttatttctatAAACTCGTACAGTTTTGAGGAAA
CCGGAAGTCAAACTGCCAAgccttttaaaaacattttgtatATAATTGTA
TCTGCCTTCATTAAACATATTTTAGCAAGAACTTTGTCNtgaattattcc
attctgttgtttcctttaagttaaatatggtttcactcatcttattagca
gactttgtcagtgtttacaaagattttgtagtcaaccacgtgaaggtgca
aaataatccattgatctaggggctactggacagtatgatggcaactaacc
tgaaagtatataatgaagaGGGA

Coding sequence (CDS) from alignment at sc0001487:6860..9432+

>TCONS_00036619 ID=TCONS_00036619|Name=TCONS_00036619|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at sc0001487:6860..9432+ (Clytia hemisphaerica)
ATGGATCAGCATCTTGCTGCTTTATGTGCCTTGTGCAGAATTTGCGGGGG
AAAAATATCCACAAAAGGAAGTTACAAATCACCAAAGCCAGTCACAGTTT
TCCAAGATACAATCAACAAATTTGATGCCTTGAAAGATATCAATCATGAT
GATGTCGCTGTACATCCCAAATCTGTTTGTAACAAATGCTACATGAAGTT
ATACCACCTTAAAGACCGTACATCACAGGTTTTGAATTGGTCTGTCTTTC
AATACAAGCCACACGTTGATGGTGACTTCTGCTATGTTTGTGTTAATGGA
AATCCAACAAGCAGATCAGAACTAGTGAAAGAGACATTAATTTCAGCTTC
TAAGtatggttttaagTTTGTGTATTGTAACATTCATAACTCGACAAATT
TCAACAGTATGACCAGTTGGATATTATGGCAATAGATGGATCAGCATCTT
GCTGCTTTATGTGCCTTGTGCAGAATTTGCGGGGGAAAAATATCCACAAA
AGGAAGTTACAAATCACCAAAGCCAGTCACAGTTTTCCAAGATACAATCA
ACAAATTTGATGCCTTGAAAGATATCAATCATGATGATGTCGCTGTACAT
CCCAAATCTGTTTGTAACAAATGCTACATGAAGTTATACCACCTTAAAGA
CCGTACATCACAGGTTTTGAATTGGTCTGTCTTTCAATACAAGCCACACG
TTGATGGTGACTTCTGCTATGTTTGTGTTAATGGAAATCCAACAAGCAGA
TCAGAACTAGTGAAAGAGACATTAATTTCAGCTTCTAAGtatggttttaa
gTTTGTGTATTGTAACATTCATAACTCGACAAATTTCAACAGTATGACCA
GTTGGATATTATGGCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021621XLOC_021621Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036619-proteinTCONS_00036619-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036619-exon-sc0001487-1491911889:6860..7313TCONS_00036619-exon-sc0001487-1491911889:6860..7313Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1510915933:6860..7313TCONS_00036619-exon-sc0001487-1510915933:6860..7313Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1575043694:6860..7313TCONS_00036619-exon-sc0001487-1575043694:6860..7313Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1491911889:7469..7880TCONS_00036619-exon-sc0001487-1491911889:7469..7880Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1510915933:7469..7880TCONS_00036619-exon-sc0001487-1510915933:7469..7880Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1575043694:7469..7880TCONS_00036619-exon-sc0001487-1575043694:7469..7880Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1491911889:8397..8484TCONS_00036619-exon-sc0001487-1491911889:8397..8484Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1510915933:8397..8484TCONS_00036619-exon-sc0001487-1510915933:8397..8484Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1575043694:8397..8484TCONS_00036619-exon-sc0001487-1575043694:8397..8484Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1491911889:8719..9432TCONS_00036619-exon-sc0001487-1491911889:8719..9432Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1510915933:8719..9432TCONS_00036619-exon-sc0001487-1510915933:8719..9432Clytia hemisphaericaexon
TCONS_00036619-exon-sc0001487-1575043694:8719..9432TCONS_00036619-exon-sc0001487-1575043694:8719..9432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001487supercontigsc0001487:6860..9432 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.6239	0.474015	0.631824	0.210759	0.359782	1.28357	0.507664	0.621137	1.13271	0.0928755	0.380531	1.20598	0.729608	1.0681	1.1634	0.754343	0.618865	0.904853	0.278131	0.188583	0.261094	0.770419	3.47307	2.18804	0.608789	0.384052	0.578545	0.369841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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