TCONS_00036618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036618
Unique NameTCONS_00036618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036618 ID=TCONS_00036618|Name=TCONS_00036618|organism=Clytia hemisphaerica|type=transcript|length=538bp
GGCAGTTTGATGTGCTTTCGGTACTGTCTCATTTTCTCACCAAGCTTTGA
GGCAACATGCCCTTTGTTGAAATCAAACCCAGGCTCAAGGTTAAACTCTT
CCTTGAGCTGTGCAAAAACAATCCGGACACGTGCCTCGTTCAATTTCAAA
AGCCCATAACCTCCGCCTATATTGCCAGTTTTTAATTCATAAGCATGGAA
TTCGGTTTTCATTAATGCTAAGCCACGCAAAGCtattttctcaacttcag
tgctCTTCAACTCTTCACTTCGGTCCCTCACCAATCGGGGGGTGTTGTCT
TGGGTGTGTATCGATgattgagcaaatcgatttgTCNAATTCATAAGCAT
GGAATTCGGTTTTCATTAATGCTAAGCCACGCAAAGCtattttctcaact
tcagtgctCTTCAACTCTTCACTTCGGTTCCTCGCCAATCGGGGGGTGTT
GTCTTGGGTGTGTATCGATgattgagcaaatcgatttgTTGCTTGGGTGT
TGTCTTGGGGGTGTATCGATgattgagcaaatcgattt
Run BLAST on NCBI

protein sequence of TCONS_00036618-protein

>TCONS_00036618-protein ID=TCONS_00036618-protein|Name=TCONS_00036618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MLMNXTNRFAQSSIHTQDNTPRLVRDRSEELKSTEVEKIALRGLALMKTE
FHAYELKTGNIGGGYGLLKLNEARVRIVFAQLKEEFNLEPGFDFNKGHVA
SKLGEKMRQYRKHIKL
Run BLAST on NCBI

transcript from alignment at sc0001486:23522..24059

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036618 ID=TCONS_00036618|Name=TCONS_00036618|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0001486:23522..24059 (Clytia hemisphaerica)
aaatcgatttgctcaatcATCGATACACCCCCAAGACAACACCCAAGCAA
caaatcgatttgctcaatcATCGATACACACCCAAGACAACACCCCCCGA
TTGGCGAGGAACCGAAGTGAAGAGTTGAAGagcactgaagttgagaaaat
aGCTTTGCGTGGCTTAGCATTAATGAAAACCGAATTCCATGCTTATGAAT
TNGAcaaatcgatttgctcaatcATCGATACACACCCAAGACAACACCCC
CCGATTGGTGAGGGACCGAAGTGAAGAGTTGAAGagcactgaagttgaga
aaataGCTTTGCGTGGCTTAGCATTAATGAAAACCGAATTCCATGCTTAT
GAATTAAAAACTGGCAATATAGGCGGAGGTTATGGGCTTTTGAAATTGAA
CGAGGCACGTGTCCGGATTGTTTTTGCACAGCTCAAGGAAGAGTTTAACC
TTGAGCCTGGGTTTGATTTCAACAAAGGGCATGTTGCCTCAAAGCTTGGT
GAGAAAATGAGACAGTACCGAAAGCACATCAAACTGCC

Coding sequence (CDS) from alignment at sc0001486:23522..24059

>TCONS_00036618 ID=TCONS_00036618|Name=TCONS_00036618|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0001486:23522..24059 (Clytia hemisphaerica)
ATGCTTATGAATTNGAcaaatcgatttgctcaatcATCGATACACACCCA
AGACAACACCCCCCGATTGGTGAGGGACCGAAGTGAAGAGTTGAAGagca
ctgaagttgagaaaataGCTTTGCGTGGCTTAGCATTAATGAAAACCGAA
TTCCATGCTTATGAATTAAAAACTGGCAATATAGGCGGAGGTTATGGGCT
TTTGAAATTGAACGAGGCACGTGTCCGGATTGTTTTTGCACAGCTCAAGG
AAGAGTTTAACCTTGAGCCTGGGTTTGATTTCAACAAAGGGCATGTTGCC
TCAAAGCTTGGTGAGAAAATGAGACAGTACCGAAAGCACATCAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021620XLOC_021620Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036618-proteinTCONS_00036618-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036618-exon-sc0001486-1491911889:23522..24059TCONS_00036618-exon-sc0001486-1491911889:23522..24059Clytia hemisphaericaexon
TCONS_00036618-exon-sc0001486-1510915933:23522..24059TCONS_00036618-exon-sc0001486-1510915933:23522..24059Clytia hemisphaericaexon
TCONS_00036618-exon-sc0001486-1575043694:23522..24059TCONS_00036618-exon-sc0001486-1575043694:23522..24059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001486supercontigsc0001486:23522..24059 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107835	0	0.488386	0.836166	0.436265	1.26406	1.66367	1.55751	0.908706	0.900463	0.437006	1.29272	1.00405	1.26615	1.46958	1.83993	0.647611	0.746753	0.458524	1.19953	0.834089	0.457694	0.247283	0.533329	1.85244	2.06658	0.147863	0.631215	0.718131	0.609718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top