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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036613 ID=TCONS_00036613|Name=TCONS_00036613|organism=Clytia hemisphaerica|type=transcript|length=125bp
gcagcatgaGCTAGAaacaatagaataaactacatgaaaatggaTACGTC
ATCCTTCAAACCATCAAATGCCACGTTTGAAGAGacaaagaaatttcaaa
gtaaaaGTCAAATGACAGGACGTCT Run BLAST on NCBI transcript from alignment at sc0001485:8212..14811- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036613 ID=TCONS_00036613|Name=TCONS_00036613|organism=Clytia hemisphaerica|type=transcript|length=6600bp|location=Sequence derived from alignment at sc0001485:8212..14811- (Clytia hemisphaerica)
GCAGCATGAGCTAGAGTGAGTTTCTGACCGAACTTTACTTTCCGATGGTT
TGTAATGGCACTGAATCTAGCCACCTTCAAATTTTTCACTTCCGTTTTCC
AAAATTATGTATAAGTATAAAACACCAAAACTATATTCTTCTCTTTTTTT
CTCAAAAATGGACGCTTTTTCGAAAGAGAAATTTTTTCAAAACTTTTAAA
GTATTATAGCTCGAGATTTAAGTTAGCCTTTGCTTTTTCACACCCCTGTG
TCACATACACACTGGAAAATTTCGCAAAAATTTGGTCCCCAATGGAAAAT
TGACTTTGATTCCATCCCCACTCGAAATTCAATGTTCAAAAGTTGCACTC
CAAAGCCATCCCACTGGATATCTTAACCTTAGAACAATAGAATTTCTATC
CCTTTTAGGATTTCAGTAGGAACTTTTATCCCCATCGAGGAAAAAAGTTC
GGCCGGGGCTGTGAAACAGGGGTGTTCTTTCTGATGGTGAAAAGTTTAGA
TTTATAACATTACTGTCTTCTGACAACATGACGTCAACACTTTTTTTGAA
ACACCCGGAATAAGAGAAAAACATAAAAATCTCTCCTAAATTTGAAAAAA
AATGGTAAATTCGTCATGGTTTTCTTTTCGCTTTTCTTCAAAAAGGGACT
GGATCTAGTTGTGCGAATTTGCTAACACTTCAAGCAAACGGGAGGTCGTC
AGTAGTCCGACACTTTCTAGTCCGACAGTAAAAATATCCGACGTTGGATT
TGACGAATGCGTCAGTATTCCAACAACAATTTTGTCCGACAACGAGTCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAAAAAACATATAAAAAACGAAATATGAATCGTGTAGAGGAGGCACAT
CTTTTATTTAAAAATCCAAAGTCCCGATTTTGAGGTTAGGCCCCTAAACC
CGACTTTTCTTAAATTTTGGGAAGCTTTTTAGGAGGCTTTTAAGAGAAAT
TTGAGGCATTAATGATTAATGAGCATAAGCCATCTCTTAATACAAAAGAC
GAGTATAGAAGTAGGGCTTTGGTAATTAAAATTTAATTCCCAAAACGCTA
CGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTATATACTTGTATGTATTTTTTCTAATTTTTCCTTTTATT
TTCTGTATCAATTCAATTTTGCTTATTCATTTATAGTGTCTTATGTGTAT
GTAGTGAAGGGATGTGTTGCATTATTTTGGAATTTACCTTATATAATTTT
TAAATCTATATAACTGTTTTTAACTGTTTTTATTCTTTTAGACCTGATGA
TGGATAAATATATCCGAAATATATCGTGAAAATAAATATTGATTGTTGTT
GGTACCAGTTTATCACAATATTACAAATTGCCACAATGTTTCTTCCGTAG
AAATTGGATTTGGCTGTTTTTACGACCCTTCTTTAGTGATTTACAACCCT
GATTGGTCCTTTATTTCTAATTATGTCAAAATGCTGCCAAAATGAAATTT
TATTAAAATATTTTCTCATTGAAAAACTCTTATTCAACATTCGACACTCT
AAAATCTTTCGTTTTCGGACAAAAGCGACGTCGGAAAAAAAGACTTCCAA
ATTGTAAATTTATTTTATAGATTCGAACTATTTTACTGTCGGACTAGAAA
GTGTCGGACTAGTGACATGTACCCAAGCAAACAAAGACGAAAAATGGAGT
CTTAAAAATTACACTGCATGAGCTACTTATCAGCGTCTATCCAGTCTATC
AAACAGCTATAAGTAGGACCCGGGCTACTAGAACGCTAGAAGCTAAAAAT
TGGACCTTTAAGATGATGTGGAATAATAAAAAGTACATTTTGTTAAATTT
TTGCATTTTTTGACTTTTTCGCTTAAAATGCCCACTTTTGAGTTTTTTTT
GCTTGACCATGAAGCCCAATATAATTCTTACAAGATGACGATTTCAAACT
CAAACTTGGCATTACAGGAGGGCTTCGACCTTAAATAGCCCATGCCCAAT
ATATCTGACATAAAGGGTTAAAGGGACTGAGTTGTTGCTCAAAGTAAGTC
ACTTACCCTAATATATGAAAACAAACTTCCTGAAATATTAGCATCTAATT
ATCTTCCATTAGCTTACAATCTCAAATTTTTAATTTTGGTCTTTACTCCA
AGAATTTGAAATGACCCGGCAACGAAAAGTTTTTTTTTCTTGAGGATACA
CAAACCAAGCTAGCAGCTAAAATATAAAATAGACTACAAAGCCCTTTCTA
TATGGAAAAATCCTAGTGCTAAATCCAACCTAACATATCTCCCACGCTGC
TTTTCTCTCCAAAATTGATAATGTTCGAATTAGACATTTGCCAGGCAAAT
CAAGTTGATTTTAGTAGGGAGAAAAAATCCAGAAAGTCGGTACAAACGAT
ACAAATGGCTACGTACATAACATTGTGGTCTCCACCATGACAGTCTGAAG
GGTTGCAAGGAAAAAAGTAAACCATCACAGCACAGGAGTCAGTTGCATAC
TAGTTTTATACTTTTTCATTACTTTTTTGGTTTTTTTTTGGATCAATATA
ATATCATGCCCTAAAAAGCTTCAACTAACTTTGAAGATTTTCTGTTTGTT
GACTTTCTCAACTCCGACCATTTCAATTTCGATTTCAATTCTTTTCAAAA
CAAAACATTCGAATTTTGATCAAGACATTCGAAAGCACATTCGTCAATAT
GCAATGTCTTCTTTTTTTTCTCAATCGAACGTAACGTGAGGGGGACAGAT
ACGGTATATATCCCACCTCCACGTGATGTCTTTTGACCAATGAAATCGTT
AGAATCTTACTGATGCGGGATAATACATAAAGTCAAGGTCGCAAGTTTCT
TATTCTTTTATAAATGTTATGATATTTATATTTTATTTTCCTTCTTTTAT
TTCTTTTTTAGAACAATAGAATAAACTACATGAAAATGGATACGTCATCC
TTCAAACCATCAAATGCCACGTTTGAAGAGGTTTGTTAGTTTTTGTTATT
TTACATAGAGAAGTGGAGCTATAAGCATGTATAAGGGGACTGACCCGGGG
TAGGAGGGTTACTACTTTTGCAAGATGACAGGTATGTCCGAGCCAAAGTT
TGAAAATCGACCTTTAGAGAGACTGAATTTCAAAACATTTGTCAGTTTTT
GACGTTTTTTGCCACCCTTAAGCTTTTTTCACATGCACGTAAAATTTGAC
CTAGAAGGGTGAGAATTTCCCTAAGCTTATGTAGTGTAGACCAAAGCCAC
TATGGGGCGCCAAAGTCTCCAAAGTAAATTATTTTGACGCGCCATTATAA
ACTTATCAGAATTTCTTTTTCTGAAAATGGTTTGTCTTGTCCATACAAAA
CTACTGTCAAAATTTCAAGCTTGTAGCATTACTGTATAATAAAAAGATAT
TTAAAATTTGCAATGAATTACAGGATTTTTTACTGAAAAAGTTAGGTCAA
ATTTGAGTTTGCTCACGTAAGCATAATTGGATGTCGTGGATGTCTGACAA
AAAATATATGTTTGTGCATAAATGAGCTAAAATAAAAGTTATAGGAGCTG
TCCTAAAATTTTAAGGCCATACAGTATTACAATCCCTTAAAAAGCTATCG
AAAAAAAAGTTGTAGGGAGGCAGAATTTTTAGTAGGATTTATAGGGTTAA
GGAATATTTCCCTTTTGTTTTCTTTTTCTCATCTAGTTGGTCTTTTTGAT
TGAAATTTGGCACACAAGACCCTTGTAATATAAGATAACTTTTGTGAAAT
TCTTTCGAAGCGAAGATATAAAAAATACTTTCGTTCTTTCAAAAACTAAA
GGCTTATTTTATCTGATTAAAAAAATACGGTTTGAATGATAAAATTGACT
TAAAAGTTAATTTAAATTGTAAATGTACCCATTTTTATCAGTGGCGGCCT
GGCAGGGGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTGAGAGGG
GCGCCAAAAAAGCTTTTCAAGGGGGCGCCAAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCTTTTCCCCCCCCCCCCCCCCTATAAAAGCTTCAATCGAATCAA
ACGAGTCAATCGGTAAATATGTGATTTTAGCCAAATTTTTATGTTCTACT
TTGTAAAGTATCAATCACATCATCACAACAACCCTTTGGATAGGAAATCT
GCTAGTTTTTGCCAATCTCGGTGATGACGTCAAAATTGGGTTACTTTTTT
AGTGCTGGTATAATCTAGAACCTGGCACTGAGCAGAAAGTTTAAGAACCT
TCAAAATTTCTGGATGACTTATTTATGAAACTTTCAAGCATCTTCCTAAC
TTTTTTCCAGGGGAAGCATCTTAAGGTGAGCGGGGGAAGGCGGTTCTGAT
TGGTACTTCACTGACCAGAATTTAAATTTGCATAAATTCACATTTTTAAT
TAATGGACTCTCTTGATTCGAGTGAAATTTGTTTCTGAAGGTTGGTTTAT
TGAAAACAGAGACTAGTAAGGTCCATCATGACTATTTGGTATTTTACAGA
TCGATCTGTAAATTACACGCAAAAAGTCTAACTGGAACTTTTGTGTACTT
TTTACAAGTAGTAGAGGACCCCCAATCGTTTTTTGTAATGGCGTGATTGG
CGTTTTTTCAAGTTCCTGTTTAACATGCGTGATTGCATGATCAGAGGAAC
TACACGCTTTTTTTATAAGAATGGTGTTTTTTCATTTCATCATGGATATT
CTTAACTTTTTGGCAAAAATCATACAAAAATATTCTTACGGGTACTCTTA
GGTTACGATCGAAATTGGCAATCTACAGGTTAAAATCCATTAAAAATGGC
ATTCTTAGGTTTAGTTGCTAAATTCCATGATGCTGATATTCTTACCTTAT
TCTTAATTTTTTCGCCATTTTGATCATGGACATTCTTATAAAGTGTATTC
TTATAATAAAAAAAGCGTGTAACGTGATCAGCGCGATTTTGATAGAAAGA
AAATTCAACTTGTGATAACGTGGTTTGGAATTCTTTTTTGCGTGATTGCG
TGATTTGAAAGGTTACTGGGGGCTCGTAGCAGACATCGCCCACCTAAGCA
GTGTGCGAAATTTTACTTTGGTCACGTGCGTGGTTGGTATTTTACAGACC
AGTCTGCCTTAGATGCTCACTTTTATCATAGCCACTGGTTTGATTGTGCT
TGAATTTTGGATGCAAGCTTGTATTATAAACATTTAATACTTTTCAATTT
TATAAATCAATAACATATTCCAATCTCCAGATACAGCAACCTAAAAAGAG
AAAAAAGGAAAAAGAATGGCATTTTTAGGCCAGACTGTAAAATATACGAT
ACCAGTAGGTGCCAAAAAATGGTTCTTTGTTTCAAAAATATACTACCTCA
CAAAATTTGAGCAAAATTGGAAAAAGTCAGAGGGGATCCTATTTATTTGC
CATTTTCAAGTAATGACGACATCATCTGCTGGCGATGATGTCATCAATGA
TGTCAAAAATTTCATGTAAAAATGCCAACTCATATTTGGTGCACACTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCAAAAAAAAA
AAAAAAGATGCTAGAAGATTTGACCATTTAACACCTTTTTTATATCATTT
ATCTTTCAGACAAAGAAATTTCAAAGTAAAAGTCAAATGACAGGACGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036613-exon-sc0001485-1575043694:14797..14811 | TCONS_00036613-exon-sc0001485-1575043694:14797..14811 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1575043694:11682..11750 | TCONS_00036613-exon-sc0001485-1575043694:11682..11750 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1575043694:8212..8252 | TCONS_00036613-exon-sc0001485-1575043694:8212..8252 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1510915933:14797..14811 | TCONS_00036613-exon-sc0001485-1510915933:14797..14811 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1510915933:11682..11750 | TCONS_00036613-exon-sc0001485-1510915933:11682..11750 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1510915933:8212..8252 | TCONS_00036613-exon-sc0001485-1510915933:8212..8252 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1491911889:14797..14811 | TCONS_00036613-exon-sc0001485-1491911889:14797..14811 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1491911889:11682..11750 | TCONS_00036613-exon-sc0001485-1491911889:11682..11750 | Clytia hemisphaerica | exon |
| TCONS_00036613-exon-sc0001485-1491911889:8212..8252 | TCONS_00036613-exon-sc0001485-1491911889:8212..8252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001485 | supercontig | sc0001485:8212..14811 - |
Blast
The following BLAST results are available for this feature:
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