TCONS_00036612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036612
Unique NameTCONS_00036612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036612 ID=TCONS_00036612|Name=TCONS_00036612|organism=Clytia hemisphaerica|type=transcript|length=332bp
cggaggaaataataaaacaaaattttatgaaatttgctAAGTATCTAAAT
AAGTCTCTCTTCAACACCTCTTCTTCTTAGCACATATGCAGGAAAAATGT
ACTCTTGGAGTTTTTGTGGATAGGGAAATTCCATAGGGAAGTTCCCTGAC
ATTAAGGGAAGGATCAAAGTATCTTTACATTGGCAGAATAGAGCACAGCT
GTGTTAGATTATTTAACCCCCactcttttctcttcttttcttttgttttc
ctgtttaagtaaaggtttttttatttctttcttcttttttgaaggtcgga
ggagaaaaagtaaataaaagtttttgaaatct
Run BLAST on NCBI

transcript from alignment at sc0001484:32890..33221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036612 ID=TCONS_00036612|Name=TCONS_00036612|organism=Clytia hemisphaerica|type=transcript|length=332bp|location=Sequence derived from alignment at sc0001484:32890..33221 (Clytia hemisphaerica)
agatttcaaaaacttttatttactttttctcctccgaccttcaaaaaaga
agaaagaaataaaaaaacctttacttaaacaggaaaacaaaagaaaagaa
gagaaaagagtGGGGGTTAAATAATCTAACACAGCTGTGCTCTATTCTGC
CAATGTAAAGATACTTTGATCCTTCCCTTAATGTCAGGGAACTTCCCTAT
GGAATTTCCCTATCCACAAAAACTCCAAGAGTACATTTTTCCTGCATATG
TGCTAAGAAGAAGAGGTGTTGAAGAGAGACTTATTTAGATACTTagcaaa
tttcataaaattttgttttattatttcctccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021614XLOC_021614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036612-exon-sc0001484-1491911889:32890..33221TCONS_00036612-exon-sc0001484-1491911889:32890..33221Clytia hemisphaericaexon
TCONS_00036612-exon-sc0001484-1510915933:32890..33221TCONS_00036612-exon-sc0001484-1510915933:32890..33221Clytia hemisphaericaexon
TCONS_00036612-exon-sc0001484-1575043694:32890..33221TCONS_00036612-exon-sc0001484-1575043694:32890..33221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001484supercontigsc0001484:32890..33221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73058	4.21897	3.91891	4.47304	10.502	8.60621	10.383	8.67899	3.88887	7.52656	8.18212	6.53116	3.26104	3.38662	2.94804	2.98794	1.73219	1.99737	3.67929	2.2459	2.23097	1.22421	1.32283	1.20265	4.02577	6.0803	3.16396	0	2.56108	3.26167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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