|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036610 ID=TCONS_00036610|Name=TCONS_00036610|organism=Clytia hemisphaerica|type=transcript|length=1848bp
TGTCCCTTTCGTGGATCCAAACaaaaaacTGTGCAAGGATAAGAATGCGG
AATGTGGAGATTTATTATCTTATGAAGGTGTGACATGTGCTATCGATATG
ATTaaacaaatttgccaaaaaacgtGCGGATTTTGTTAGTAATCAGTAAT
GTGGAGATTGCCTCAGCTGTTAAAAAGAGTTATTGTGGTAATTTGTCACT
GATCAAAATATTCGAAGAAGCAGTCAAAATTTagggaaaattaatttttg
tattttggttCTGATATTATAAATTGTTAACAAAGGACATCGGTGACTAG
GAATAActtaatttttgatttatatttttcttcaaattttctagattttt
tcttttcaaataacgTGCTACTAATTCGCAGTTAAAATCAGTGAATCAct
gtttttttccttttaaaattttcgatttatgaTGTAGgaggaaaattgtc
caaaatgaCCAAATGTCCACCCTTTGACCGCAGTGTCGTTCTGGGAAAAg
aaatttccttcaaaaaagctccttCCCAAACCTCTCCTCCTTGCCAGAAC
ACCACTGtctgtcagatacacatctgatcttgaaaattagtaaaatttAG
GACCCTTTCAGATATCTCCACAGCCTAAAGAAGGTACCACGACCAGCGCC
ACgtcccgtacccaattttgtaTACTTGCTCCCTTAAGACCCCAAAGATC
AATTAAACTTTGcgcaaaatttattttgtatctattgattgactttaatt
attattaatttcTTATTGACCAATACACTATTATCCCTTTTGTTTAATCA
TTGAactttacaaactcaaaaaatgtgtttgaaaaaaagcctttgttaat
tttaaacagtttttGGAAAACAAAGGGAATTTTCGATTATTTTGCTCACT
TAAGCATATGATTTAAATGAcgttatcaaaaacaaaatttatcgTCAATT
TGACCTTATATGATACGACAAGGGTGTTCGTGTATCAAATTCCATTCGAA
aatgacaacaacaacaaaacaaaagttGTAAAAAGGGGTAATACAGAAAA
TAATTCTAAAGCCCAGTATAAATATGGTGAGAAAGTAagggccggtctcc
acttgcgtgcgtttcgatcgcactttttcgagcaaagcttccacgataaa
tggtaaaaagaaaaatgaagcaattccattggcgcgatctgacgtaacga
tTGAAACAAGTTGAAATGTATTTAACTTCTTCTTCGAGCGTGCGCTACAT
TTGATATGacgaaatattttttccgagcAAAAAGGCTTGAAGAGAAACGG
TgtgatcgcagcgcgcgcaaaaAAAGAAACCGGAAGTGGAGACCGACCTG
AACTGTCAAAAAGTTAATTGATCAAAAAGTGATAAGGAATATGGTCGTTT
AGTTAAGGAATATAACTTTGGATTGTGTGATGTTATAAtatatgaaatta
attttggctgGAATGTAACCCTTTGGATCCGTGACGGGTCAGATTCAAAA
ACAAACAACCATAAAATCTGATTAGGTTGCTGGATTTctatgaaattttc
accagaTGGTCTCAAGAAAATATACCCATTTGAAAACCATGTGTTTTGAG
TGGTTTGTAACAGCGAAAGTAAATGAATTTTTCAGTCTCTATCACAGGTT
AAAATAACCGAACtaattttctaaggaaaaaatTATTACCCATTTTTAGC
ACTTTTGACTTTCAGTTTTTTACAATATCTTGGAAATTAGACAagtttct
tcaaatattttttctgcaTTTGGTCTTATTTATGTGGATAATCGTAGTTT
AAACTTTAACTAATCATTTCTTCAGATGActtcaaagttaaaaaattg Run BLAST on NCBI transcript from alignment at sc0001484:46464..49028- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036610 ID=TCONS_00036610|Name=TCONS_00036610|organism=Clytia hemisphaerica|type=transcript|length=2565bp|location=Sequence derived from alignment at sc0001484:46464..49028- (Clytia hemisphaerica)
TGTCCCTTTCGTGGATCCAAACAAAAAACGTTTTTTGCTTTTATTTTGTC
ATCTCAAAAATGGTTTTAGTAATAGTTCTATTTATACTGAGACGGAGAAA
TCGTCCGAGACGAGAATTTTGTAAAATGTGATATGTGGAGGAGATCCTAT
TTATTAAAACATGAGTGGAAAATACACTCCTCCGTAATGCTCATTTTCTA
AATTGCTTGTCTCAGACAAATTAATCATCTCAGTATAAATGGAACTAATG
TGATTTAGATTAAATTGAAAAAATGAATAAGAATCTTGGGCAAAAAACTC
AATCGAACAGAACAAGTTATAAAGTTTTAAGGCTTTACGGACTCTAAAAC
ACCTACTATTTCTCATGGAAGTGTGTTAAATTAAAATAGTACAAATTGAG
GGCAATTTCAGGCTCTACTTTGCTCTACGCAAGAAATTATTGCTCGCGGG
TACTCAATTTCTAAACGACGGCATGTGCCGCCAAAAAAAGGCTTTTATAA
TCGGAACCTGTACAGTGCAGCTCTTGAGTAGTGAAAAAGTACCCATACAG
TGCATTTTACCGAACGTTTCTAACCATTACAGTGTAGTTTGATTACATAA
CTTTTTTTGCTCACGCGGTGCGCCGCCTTAAAAAGAGAAAGTTGTTTTTT
CCATTGTTTAAAAAATGCTGTGTAAGCAGATTTAAGAAGATAAATCATAT
AAACGGACTCTCGTGGTTTTATTCTATTTATATTCTTTCTTTGTAGTGTG
CAAGGATAAGAATGCGGAATGTGGAGATTTATTATCTTATGAAGGTGTGA
CATGTGCTATCGATATGATTAAACAAATTTGCCAAAAAACGTGCGGATTT
TGTTAGTAATCAGTAATGTGGAGATTGCCTCAGCTGTTAAAAAGAGTTAT
TGTGGTAATTTGTCACTGATCAAAATATTCGAAGAAGCAGTCAAAATTTA
GGGAAAATTAATTTTTGTATTTTGGTTCTGATATTATAAATTGTTAACAA
AGGACATCGGTGACTAGGAATAACTTAATTTTTGATTTATATTTTTCTTC
AAATTTTCTAGATTTTTTCTTTTCAAATAACGTGCTACTAATTCGCAGTT
AAAATCAGTGAATCACTGTTTTTTTCCTTTTAAAATTTTCGATTTATGAT
GTAGGAGGAAAATTGTCCAAAATGACCAAATGTCCACCCTTTGACCGCAG
TGTCGTTCTGGGAAAAGAAATTTCCTTCAAAAAAGCTCCTTCCCAAACCT
CTCCTCCTTGCCAGAACACCACTGTCTGTCAGATACACATCTGATCTTGA
AAATTAGTAAAATTTAGGACCCTTTCAGATATCTCCACAGCCTAAAGAAG
GTACCACGACCAGCGCCACGTCCCGTACCCAATTTTGTATACTTGCTCCC
TTAAGACCCCAAAGATCAATTAAACTTTGCGCAAAATTTATTTTGTATCT
ATTGATTGACTTTAATTATTATTAATTTCTTATTGACCAATACACTATTA
TCCCTTTTGTTTAATCATTGAACTTTACAAACTCAAAAAATGTGTTTGAA
AAAAAGCCTTTGTTAATTTTAAACAGTTTTTGGAAAACAAAGGGAATTTT
CGATTATTTTGCTCACTTAAGCATATGATTTAAATGACGTTATCAAAAAC
AAAATTTATCGTCAATTTGACCTTATATGATACGACAAGGGTGTTCGTGT
ATCAAATTCCATTCGAAAATGACAACAACAACAAAACAAAAGTTGTAAAA
AGGGGTAATACAGAAAATAATTCTAAAGCCCAGTATAAATATGGTGAGAA
AGTAAGGGCCGGTCTCCACTTGCGTGCGTTTCGATCGCACTTTTTCGAGC
AAAGCTTCCACGATAAATGGTAAAAAGAAAAATGAAGCAATTCCATTGGC
GCGATCTGACGTAACGATTGAAACAAGTTGAAATGTATTTAACTTCTTCT
TCGAGCGTGCGCTACATTTGATATGACGAAATATTTTTTCCGAGCAAAAA
GGCTTGAAGAGAAACGGTGTGATCGCAGCGCGCGCAAAAAAAGAAACCGG
AAGTGGAGACCGACCTGAACTGTCAAAAAGTTAATTGATCAAAAAGTGAT
AAGGAATATGGTCGTTTAGTTAAGGAATATAACTTTGGATTGTGTGATGT
TATAATATATGAAATTAATTTTGGCTGGAATGTAACCCTTTGGATCCGTG
ACGGGTCAGATTCAAAAACAAACAACCATAAAATCTGATTAGGTTGCTGG
ATTTCTATGAAATTTTCACCAGATGGTCTCAAGAAAATATACCCATTTGA
AAACCATGTGTTTTGAGTGGTTTGTAACAGCGAAAGTAAATGAATTTTTC
AGTCTCTATCACAGGTTAAAATAACCGAACTAATTTTCTAAGGAAAAAAT
TATTACCCATTTTTAGCACTTTTGACTTTCAGTTTTTTACAATATCTTGG
AAATTAGACAAGTTTCTTCAAATATTTTTTCTGCATTTGGTCTTATTTAT
GTGGATAATCGTAGTTTAAACTTTAACTAATCATTTCTTCAGATGACTTC
AAAGTTAAAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036610-exon-sc0001484-1575043694:49000..49028 | TCONS_00036610-exon-sc0001484-1575043694:49000..49028 | Clytia hemisphaerica | exon |
| TCONS_00036610-exon-sc0001484-1575043694:46464..48282 | TCONS_00036610-exon-sc0001484-1575043694:46464..48282 | Clytia hemisphaerica | exon |
| TCONS_00036610-exon-sc0001484-1510915933:49000..49028 | TCONS_00036610-exon-sc0001484-1510915933:49000..49028 | Clytia hemisphaerica | exon |
| TCONS_00036610-exon-sc0001484-1510915933:46464..48282 | TCONS_00036610-exon-sc0001484-1510915933:46464..48282 | Clytia hemisphaerica | exon |
| TCONS_00036610-exon-sc0001484-1491911889:49000..49028 | TCONS_00036610-exon-sc0001484-1491911889:49000..49028 | Clytia hemisphaerica | exon |
| TCONS_00036610-exon-sc0001484-1491911889:46464..48282 | TCONS_00036610-exon-sc0001484-1491911889:46464..48282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001484 | supercontig | sc0001484:46464..49028 - |
Blast
The following BLAST results are available for this feature:
|
