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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036608 ID=TCONS_00036608|Name=TCONS_00036608|organism=Clytia hemisphaerica|type=transcript|length=563bp
GTTAATGATACGTCAGACGAAATCCCACCTTCAGTGTCTGAATCAAAAAC
AACAATTTCTAAAGTGATTGACAAGATTGCAGCGACCATGATGGAACTCA
ATCATCGGCTTTTTCATGGCAATATTTATCAATTGCACAAAAAAGCTCGA
TTCACCTTTATGCTGTTCCTTGATGTCAATGCTTATCTTTCGAAACTACA
ACTAAACCCTGATTTGCGAGAATCTATCATGATCCACGAAACTAAACTTA
AACAAACAATGTCCAACGAACATACAGTGcATTTTCCGAACATCAAAATT
GATTACGACTACATCGAGGTTCGAAACAACGTTTATCTTAAGCTGTCAAG
TCGAGCGTATGTGGAATGTCCCTTTACAGGAGAAGATTTCGGAAAAATAA
CTCCGAGAAGTTTCCAAGATTTCGACGCACATCGAACAAATTCTCATGGT
TGGTATCTGGCGTCTGCAATGGAACGATGGTGCCCTACACTTAAATCACA
GGCGAAGCTTGCCCATAAGATCTACCTTTGTTTATTAACCTATCAGGTGC
CTTACAAAACCAA Run BLAST on NCBI protein sequence of TCONS_00036608-protein >TCONS_00036608-protein ID=TCONS_00036608-protein|Name=TCONS_00036608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
VNDTSDEIPPSVSESKTTISKVIDKIAATMMELNHRLFHGNIYQLHKKAR
FTFMLFLDVNAYLSKLQLNPDLRESIMIHETKLKQTMSNEHTVHFPNIKI
DYDYIEVRNNVYLKLSSRAYVECPFTGEDFGKITPRSFQDFDAHRTNSHG
WYLASAMERWCPTLKSQAKLAHKIYLCLLTYQVPYKT Run BLAST on NCBI transcript from alignment at sc0001484:19336..21259+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036608 ID=TCONS_00036608|Name=TCONS_00036608|organism=Clytia hemisphaerica|type=transcript|length=1924bp|location=Sequence derived from alignment at sc0001484:19336..21259+ (Clytia hemisphaerica)
GTTAATGATACGTCAGACGAAATCCCACCTTCAGTGTCTGAATCAAAAAC
AACAATTTCTAAAGTGATTGACAAGATTGCAGCGACCATGATGGAACTCA
ATCATCGGCTTTTTCATGGCAATATTTATCAATTGCACAAAAAAGGTCTG
GAATACTTTTCGAGTTGTTGATTGATACCACTGAGTCACATtgcattaaa
tttttcaaagggATAAGTCTATTCTTTATTTGTCAATCTTTATTTATTAa
agaatcttttctttttgagatttaaattaaaaatttgatatttttcaatc
aaatttatgCAACTCAAAATTTGGGTTTGATTTTCTTTCAGCTCGATTCA
CCTTTACGCTGTTCNttaaaaatttgatatttttcaaacaaatttatgca
aCTCAAAATTTGGGTTTGATTTTCTTTCAGCTCGATTCACCTTTATGCTG
TTCCTTGATGTCAATGCTTATCTTTCGAAACTACAACTAAACCCTGATTT
GCGAGAATCTATCATGATCCACGAAACTAAACTTAAACAAACAATGTCCA
ACGAACATACAGTGGTAtgtattttgacttttgaaattttattttttttc
cttttcaaagaAGACCATTTGAAGACCAGTAGCCCAAGACGTAGACCGtc
gtttttatgagacttttgtACTGAAAAGACCGTTGGCCCGTCAACACTAG
GGGAAGTCGCTTTGATTTTATTCACACTTTGAGACTTAAAagaaatttct
atcattttgaaaGAAGACCATTTGAAGACCAGTAGCCCAAGACGTAGACC
GtcgtttttatgagacttttgtACTGAAAAGACCGTTGGCCCGTCTACAC
TAGGGGAAGTCGCTTTGATTTTATTGACACTTTGAGACTTTAAagaaatt
tctatcattttgaaaGAAGACCATTTGAAGACCAGTAGCCCAAGACGTAG
ACCGtcgtttttatgagacttttgtACTGAAAAGACCGTTGGCCCGTCGA
TACTAGGTGAAGTcgctttgattttattgatactttgaaactttaaagaa
atttctatcattttgaaaGAAGACCATTTGAAGACCAGTAGCCCAAGACG
TAGACCGtcgtttttatgagacttttgtACTGAAAAGACCGTTGGCCCGT
CTATACTAGGGGAAGTCGCTTTGATTTTATTGACACTTTGAGACTTTAAa
gaaatttctatcattttgaaaGAAGACCATTTGAAGACCAGTAGCCCAAG
ACGTAGACCGtcgtttttatgagacttttgtATTGAAAAGACCGTTGGCC
CGTCGATACTAGGGGAAGTCGCTTTGATTTTATtgacattttaagacttt
aaagaaatttctatcattttgaaaGAAGACCATTTGAAGACCAGTAGCCC
AAGACGTAGACCGtcgtttttatgagacttttgtACTGAAAAGACCGTTG
GCCCGTCAATTCTAGGGAAAATCGCTTTGATTTATTgaacttttgagatt
tttaggtttttgactGACCCTTTATTCACTTTTGTAAATCTTTACGTCcc
tttttttaagcttttgtaCTGTGTAGATCGTTAGActgttgattttaaaa
atttatataaatttttgaatgtttatttgtttttctttagcATTTTCCGA
ACATCAAAATTGATTACGACTACATCGAGGTTCGAAACAACGTTTATCTT
AAGCTGTCAAGTCGAGCGTATGTGGAATGTCCCTTTACAGGAGAAGATTT
CGGAAAAATAACTCCGAGAAGTTTCCAAGATTTCGACGCACATCGAACAA
ATTCTCATGGTTGGTATCTGGCGTCTGCAATGGAACGATGGTGCCCTACA
CTTAAATCACAGGCGAAGCTTGCCCATAAGATCTACCTTTGTTTATTAAC
CTATCAGGTGCCTTACAAAACCAA Coding sequence (CDS) from alignment at sc0001484:19336..21259+ >TCONS_00036608 ID=TCONS_00036608|Name=TCONS_00036608|organism=Clytia hemisphaerica|type=CDS|length=1683bp|location=Sequence derived from alignment at sc0001484:19336..21259+ (Clytia hemisphaerica)
GTTAATGATACGTCAGACGAAATCCCACCTTCAGTGTCTGAATCAAAAAC
AACAATTTCTAAAGTGATTGACAAGATTGCAGCGACCATGATGGAACTCA
ATCATCGGCTTTTTCATGGCAATATTTATCAATTGCACAAAAAAGCTCGA
TTCACCTTTATGCTGTTCCTTGATGTCAATGCTTATCTTTCGAAACTACA
ACTAAACCCTGATTTGCGAGAATCTATCATGATCCACGAAACTAAACTTA
AACAAACAATGTCCAACGAACATACAGTGcATTTTCCGAACATCAAAATT
GATTACGACTACATCGAGGTTCGAAACAACGTTTATCTTAAGCTGTCAAG
TCGAGCGTATGTGGAATGTCCCTTTACAGGAGAAGATTTCGGAAAAATAA
CTCCGAGAAGTTTCCAAGATTTCGACGCACATCGAACAAATTCTCATGGT
TGGTATCTGGCGTCTGCAATGGAACGATGGTGCCCTACACTTAAATCACA
GGCGAAGCTTGCCCATAAGATCTACCTTTGTTTATTAACCTATCAGGTGC
CTTACAAAACCGTTAATGATACGTCAGACGAAATCCCACCTTCAGTGTCT
GAATCAAAAACAACAATTTCTAAAGTGATTGACAAGATTGCAGCGACCAT
GATGGAACTCAATCATCGGCTTTTTCATGGCAATATTTATCAATTGCACA
AAAAAGCTCGATTCACCTTTATGCTGTTCCTTGATGTCAATGCTTATCTT
TCGAAACTACAACTAAACCCTGATTTGCGAGAATCTATCATGATCCACGA
AACTAAACTTAAACAAACAATGTCCAACGAACATACAGTGcATTTTCCGA
ACATCAAAATTGATTACGACTACATCGAGGTTCGAAACAACGTTTATCTT
AAGCTGTCAAGTCGAGCGTATGTGGAATGTCCCTTTACAGGAGAAGATTT
CGGAAAAATAACTCCGAGAAGTTTCCAAGATTTCGACGCACATCGAACAA
ATTCTCATGGTTGGTATCTGGCGTCTGCAATGGAACGATGGTGCCCTACA
CTTAAATCACAGGCGAAGCTTGCCCATAAGATCTACCTTTGTTTATTAAC
CTATCAGGTGCCTTACAAAACCGTTAATGATACGTCAGACGAAATCCCAC
CTTCAGTGTCTGAATCAAAAACAACAATTTCTAAAGTGATTGACAAGATT
GCAGCGACCATGATGGAACTCAATCATCGGCTTTTTCATGGCAATATTTA
TCAATTGCACAAAAAAGCTCGATTCACCTTTATGCTGTTCCTTGATGTCA
ATGCTTATCTTTCGAAACTACAACTAAACCCTGATTTGCGAGAATCTATC
ATGATCCACGAAACTAAACTTAAACAAACAATGTCCAACGAACATACAGT
GcATTTTCCGAACATCAAAATTGATTACGACTACATCGAGGTTCGAAACA
ACGTTTATCTTAAGCTGTCAAGTCGAGCGTATGTGGAATGTCCCTTTACA
GGAGAAGATTTCGGAAAAATAACTCCGAGAAGTTTCCAAGATTTCGACGC
ACATCGAACAAATTCTCATGGTTGGTATCTGGCGTCTGCAATGGAACGAT
GGTGCCCTACACTTAAATCACAGGCGAAGCTTGCCCATAAGATCTACCTT
TGTTTATTAACCTATCAGGTGCCTTACAAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036608-exon-sc0001484-1491911889:19336..19480 | TCONS_00036608-exon-sc0001484-1491911889:19336..19480 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1510915933:19336..19480 | TCONS_00036608-exon-sc0001484-1510915933:19336..19480 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1575043694:19336..19480 | TCONS_00036608-exon-sc0001484-1575043694:19336..19480 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1491911889:19766..19899 | TCONS_00036608-exon-sc0001484-1491911889:19766..19899 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1510915933:19766..19899 | TCONS_00036608-exon-sc0001484-1510915933:19766..19899 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1575043694:19766..19899 | TCONS_00036608-exon-sc0001484-1575043694:19766..19899 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1491911889:20976..21259 | TCONS_00036608-exon-sc0001484-1491911889:20976..21259 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1510915933:20976..21259 | TCONS_00036608-exon-sc0001484-1510915933:20976..21259 | Clytia hemisphaerica | exon |
| TCONS_00036608-exon-sc0001484-1575043694:20976..21259 | TCONS_00036608-exon-sc0001484-1575043694:20976..21259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001484 | supercontig | sc0001484:19336..21259 + |
Blast
The following BLAST results are available for this feature:
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