TCONS_00036604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036604
Unique NameTCONS_00036604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036604 ID=TCONS_00036604|Name=TCONS_00036604|organism=Clytia hemisphaerica|type=transcript|length=697bp
CTCCGTTAAAGGTAAAATATATTCCTTTCCCGTTTAGATTCAGTATGATT
TCAGAAGTTTTTGAGGAATTATAGTTAGAATTGTCTCGATTTCGGTTATG
TTATCGTGTTTAAACAATAATTACTATGATTCTATggttgattttttgca
tagtcTTCTACACTTGATTCGTTTAAACTCTAATATCAATGAGACATTCA
ACAGTGTATGTAGTAACCCGAAAGCTACTGAAAACGTTTGGTGGATGGTA
CTGGacagaagaaattgaaaacactTGTGGAGTCATTTACAAAATGACAT
AAACTAAAGATATTTTCTGCTCTAACAATGGTACAGCATGTATGGTCTTC
AACCAGAACTCTGTGAAATCCACATGCTCTTATTGAGCCTGGTCAGAAAG
GTCAAACTCGTCACCAGGCTCCAAAGAGCATGGGCAGCAAAGACAAAAAC
ACAGAAAACTCAAGAAAGGGGCATGGTGGACTAGTGACTCATACACACTG
ATCTGTTCTGCAAAATACTCGTGAGTCACCATGAAGGGATGTCAAATGTA
AACAACTAAACATTAACTAGTACTAGTTCTAGTTTTATATTTGCataaga
caaaaaaatgcctacttaatctcgcaaattctacgtaaaaatacaaaaat
gaaaatatttaatagctaagataaagatataaaaaattagaataaat
Run BLAST on NCBI

transcript from alignment at sc0001483:41040..41736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036604 ID=TCONS_00036604|Name=TCONS_00036604|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at sc0001483:41040..41736 (Clytia hemisphaerica)
atttattctaattttttatatctttatcttagctattaaatattttcatt
tttgtatttttacgtagaatttgcgagattaagtaggcatttttttgtct
tatGCAAATATAAAACTAGAACTAGTACTAGTTAATGTTTAGTTGTTTAC
ATTTGACATCCCTTCATGGTGACTCACGAGTATTTTGCAGAACAGATCAG
TGTGTATGAGTCACTAGTCCACCATGCCCCTTTCTTGAGTTTTCTGTGTT
TTTGTCTTTGCTGCCCATGCTCTTTGGAGCCTGGTGACGAGTTTGACCTT
TCTGACCAGGCTCAATAAGAGCATGTGGATTTCACAGAGTTCTGGTTGAA
GACCATACATGCTGTACCATTGTTAGAGCAGAAAATATCTTTAGTTTATG
TCATTTTGTAAATGACTCCACAagtgttttcaatttcttctgtCCAGTAC
CATCCACCAAACGTTTTCAGTAGCTTTCGGGTTACTACATACACTGTTGA
ATGTCTCATTGATATTAGAGTTTAAACGAATCAAGTGTAGAAgactatgc
aaaaaatcaaccATAGAATCATAGTAATTATTGTTTAAACACGATAACAT
AACCGAAATCGAGACAATTCTAACTATAATTCCTCAAAAACTTCTGAAAT
CATACTGAATCTAAACGGGAAAGGAATATATTTTACCTTTAACGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021606XLOC_021606Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036604-exon-sc0001483-1491911889:41040..41736TCONS_00036604-exon-sc0001483-1491911889:41040..41736Clytia hemisphaericaexon
TCONS_00036604-exon-sc0001483-1510915933:41040..41736TCONS_00036604-exon-sc0001483-1510915933:41040..41736Clytia hemisphaericaexon
TCONS_00036604-exon-sc0001483-1575043694:41040..41736TCONS_00036604-exon-sc0001483-1575043694:41040..41736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001483supercontigsc0001483:41040..41736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68018	1.83311	1.395	1.0978	9.41004	5.99965	5.75495	5.6329	4.54751	6.48056	11.2617	7.63618	4.7704	5.50607	4.41465	3.76495	3.38241	3.82013	7.84571	8.84373	16.1832	17.741	9.56398	10.2343	2.34326	7.16952	23.3219	26.0764	16.1984	13.4657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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