TCONS_00036599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036599
Unique NameTCONS_00036599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036599 ID=TCONS_00036599|Name=TCONS_00036599|organism=Clytia hemisphaerica|type=transcript|length=1875bp
GACAATCCTCAACACTCGAGTGACGCCTGATAGTCCTATCAGGTTTAGAA
GTATCATAGAGTGTcgctgattttttttaaaccatgAAAGTACAAATTTT
TAACAGCCTTTACTAATTATATGTTTTTTAAATAGCAAAAAagctaaatc
caatttttgataaTAATCTTCAACGCTCGAGTGACGCCTGATAGTCCTAT
CAGGTTTAGAAGTATCATAGAGTGTCGctgatttttttttaaccaTGAAA
GTACAAATTTTTAACAGCATTTACTAATTATATGTTTTTTAAATAGCAAA
AAagctaaatccaatttttgataaTAATCTTCAACACTCGAGTGACGCCT
GATAGTCTTATCAGGTTTAGAAGTATCATAGAGTGTcgctgacttttttt
caaaaaatcataaagataCAAATTTTTAACAGCGTTTACTGCATATGttt
aaaagcaaaaagcaaaatccaatttttgataaTAATCATCAACACTCGAG
TGACGCCTGATAGTCCTATCAGGTTTAGAAGTATCATAGAGTGtcgctga
ttttttttcagaaaaccaTTGACAGCGTTTACTACATATGtttaaaagca
aaaagcaaaatgcaatttttgataATAATCTTCAACACTCGAGTAACGCC
TGATAGTCCTATCAGGGACGCCTGATATTCCCATTAGGTTTAGAAGTATT
ATAGAGTGttcctgattttttttcagaaaaccatgaaaatacaaattttt
aacAGCGTTCACTACATATGtttaaaagcaaaaagcaaaatccaattttt
gataaTAGTCTTCAACACTCGAGTGACGCCTGATAGTCCTATCAGGTTTA
CAAGTATCATAGAGTGTTGCTGATTTTCTTTTCAGAAAACTATGTAAATA
CAAATTTTTAACAGCGTTTACTACATATGTTTAAAAGCAAAAAGCAAAAT
CCAATATTTGATAATAATCTTCAACACTCGAGTGACGCCTGATAGTCCTA
TCAGTGACGCCTGATAGTCCTATTAGGTTTAGAAGTATCATAGAGTGtcg
ctgattttttttcagaaaatacaaatttttaacAGCGTTTACTACATATG
tttaaaagcaaaaagcaaaatcCAATATTTGATAATAATCTTCAACACTC
GAGTGACGCCTGATAGTCCTATTAGGTTTAGAAGTATCATAGAGTGTCGC
TGATTTTTTTTCAGAAAACCATGAAAATACAAATTTTTAGCAGCATTTAC
TAATTATATATTTAGAGCAAAAagcaaaagccaatttttgatAGTGACAC
CTGATAGTCCTATCACGTTTAGAAGTATCACAGAGTGtcgcttttttttt
ttaagttataaGATATAGAGAACAGGGACAAAAGTACGaagatttttctg
ttttttttctttcgaaaagaAAGAATACCAAAATTATAGTCCAAACCCTT
ACGTAAACCCTTCTTTTATTGGTCTAGTTTAATTCTCTTCTTGTAGAATT
TTAAACGCTCTCTTTACCTTTTACTCTTTTCTTACCCCTCGTCCTTTGGG
CCCTGTTGAAatgtttgaatttatttataCAGTATTGTGATTATTCACTG
TTTTAGTAGCTAACACTACGGGACTTGAAATAAAGTATTATTTACTACTT
TTAGTAAACGTTAGTATATATAGCTTCTGATTCCCTCAAATTCAAAtacc
ttatataaaaaagaaaaagtacttGCTGAAAAAGTTCTTGTCTTTCTTAC
ATACTCTTTAAAACATATGTATGTAATTTTTAGTGCCAggggcggtgcga
cacccctgcaaaacatgcactcgcagggtatgctccggagtcttttttgt
cgcagcttgtttttagcctacccgN
Run BLAST on NCBI

transcript from alignment at sc0001483:50767..52938-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036599 ID=TCONS_00036599|Name=TCONS_00036599|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at sc0001483:50767..52938- (Clytia hemisphaerica)
GACAATCCTCAACACTCGAGTGACGCCTGATAGTCCTATCAGGTTTAGAA
GTATCATAGAGTGTCGCTGATTTTTTTTAAACCATGAAAGTACAAATTTT
TAACAGCCTTTACTAATTATATGTTTTTTAAATAGCAAAAAAGCTAAATC
CAATTTTTGATAATAATCTTCAACGCTCGAGTGACGCCTGATAGTCCTAT
CAGGTTTAGAAGTATCATAGAGTGTCGCTGATTTTTTTTTAACCATGAAA
GTACAAATTTTTAACAGCATTTACTAATTATATGTTTTTTAAATAGCAAA
AAAGCTAAATCCAATTTTTGATAATAATCTTCAACACTCGAGTGACGCCT
GATAGTCTTATCAGGTTTAGAAGTATCATAGAGTGTCGCTGACTTTTTTT
CAAAAAATCATAAAGATACAAATTTTTAACAGCGTTTACTGCATATGTTT
AAAAGCAAAAAGCAAAATCCAATTTTTGATAATAATCATCAACACTCGAG
TGACGCCTGATAGTCCTATCAGGTTTAGAAGTATCATAGAGTGTCGCTGA
TTTTTTTTCAGAAAACCATTGACAGCGTTTACTACATATGTTTAAAAGCA
AAAAGCAAAATGCAATTTTTGATAATAATCTTCAACACTCGAGTAACGCC
TGATAGTCCTATCAGGGACGCCTGATATTCCCATTAGGTTTAGAAGTATT
ATAGAGTGTTCCTGATTTTTTTTCAGAAAACCATGAAAATACAAATTTTT
AACAGCGTTCACTACATATGTTTAAAAGCAAAAAGCAAAATCCAATTTTT
GATAATAGTCTTCAACACTCGAGTGACGCCTGATAGTCCTATCAGGTTTA
CAAGTATCATAGAGTGTTGCTGATTTTCTTTTCAGAAAACTATGTAAATA
CAAATTTTTAACAGCGTTTACTACATATGTTTAAAAGCAAAAAGCAAAAT
CCAATATTTGATAATAATCTTCAACACTCGAGTGACGCCTGATAGTCCTA
TCAGGTTTAGAAGTATCATAGAGTGTTGCTGATTTTATTTTCAGAAAACC
ATGTAAATACAAATTTTTAACAGCGTTTACTACATATGTTTAAAAGCAAA
AAGCAAAATCTAATATTTGATAATAATCTTCAACACTCGAGTGACGCCTG
ATAGTCCTATTAGGTTTAGAAGTATCATAGAGTGTCGCTGATTTTTTTTC
AGAAAATACAAATTTTTAACAGCGTTTACTACATATGTTTAAAAGCAAAA
AGCAAAATCCAGTTTTTGATAATAATCTTCAACACTCGAGTGACGCCTGA
TAGTCCTATCAGGTTTACAAGTATCATAGAGTGTTGCTGATTTTCTTTTA
AGAAAACCATGTAAATACAATTTTTTTAACAGCGTTTACTACATATGTTT
AAAAGCAAAAAGCAAAATCCAATATTTGATAATAATCTTCAACACTCGAG
TGACGCCTGATAGTCCTATTAGGTTTAGAAGTATCATAGAGTGTCGCTGA
TTTTTTTTCAGAAAACCATGAAAATACAAATTTTTAGCAGCATTTACTAA
TTATATATTTAGAGCAAAAAGCAAAAGCCAATTTTTGATAGTGACACCTG
ATAGTCCTATCACGTTTAGAAGTATCACAGAGTGTCGCTTTTTTTTTTTA
AGTTATAAGATATAGAGAACAGGGACAAAAGTACGAAGATTTTTCTGTTT
TTTTTCTTTCGAAAAGAAAGAATACCAAAATTATAGTCCAAACCCTTACG
TAAACCCTTCTTTTATTGGTCTAGTTTAATTCTCTTCTTGTAGAATTTTA
AACGCTCTCTTTACCTTTTACTCTTTTCTTACCCCTCGTCCTTTGGGCCC
TGTTGAAATGTTTGAATTTATTTATACAGTATTGTGATTATTCACTGTTT
TAGTAGCTAACACTACGGGACTTGAAATAAAGTATTATTTACTACTTTTA
GTAAACGTTAGTATATATAGCTTCTGATTCCCTCAAATTCAAATACCTTA
TATAAAAAAGAAAAAGTACTTGCTGAAAAAGTTCTTGTCTTTCTTACATA
CTCTTTAAAACATATGTATGTAATTTTTAGTGCCAGGGGCGGTGCGACAC
CCCTGCAAAACATGCACTCGCAGGGTATGCTCCGGAGTCTTTTTTGTCGC
AGCTTGTTTTTAGCCTACCCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021601XLOC_021601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036599-exon-sc0001483-1575043694:51935..52938TCONS_00036599-exon-sc0001483-1575043694:51935..52938Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1575043694:51707..51797TCONS_00036599-exon-sc0001483-1575043694:51707..51797Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1575043694:50767..51546TCONS_00036599-exon-sc0001483-1575043694:50767..51546Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1510915933:51935..52938TCONS_00036599-exon-sc0001483-1510915933:51935..52938Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1510915933:51707..51797TCONS_00036599-exon-sc0001483-1510915933:51707..51797Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1510915933:50767..51546TCONS_00036599-exon-sc0001483-1510915933:50767..51546Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1491911889:51935..52938TCONS_00036599-exon-sc0001483-1491911889:51935..52938Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1491911889:51707..51797TCONS_00036599-exon-sc0001483-1491911889:51707..51797Clytia hemisphaericaexon
TCONS_00036599-exon-sc0001483-1491911889:50767..51546TCONS_00036599-exon-sc0001483-1491911889:50767..51546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001483supercontigsc0001483:50767..52938 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.56594	1.89919	2.44477	4.44431	5.65567	2.97423	4.3017	7.55426	4.67908	4.24059	0	0	0	0	0	0	0	0	0	0	0.277951	2.63541	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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