TCONS_00036598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036598
Unique NameTCONS_00036598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036598 ID=TCONS_00036598|Name=TCONS_00036598|organism=Clytia hemisphaerica|type=transcript|length=918bp
GTACAGTAATAAAATAGTACAGTAATAAAAAGCGTGTTAAAGATAGTACA
CTAATAGGGTACGCACAATTAGCAGTGTCACATGAAAAAGGTGTTCAAAA
GCTAAAGGAGAGCACATATTAGAATCGAGGCGAACAAGAGTCATACTACT
TTGACCCCGGTTGTCATTGAACCCACTGTGACAGCTCAAGAATCTGTTAA
TCAAGCAAGGGAAATGAGCAAGTTGTCTAGCGCagatcttgaattttttt
gtgacacCACTCATACATATTGTACAGCATGGACCTACACCTGATGATTC
AAGCACCGGAACCATAGATGATTCGGTGGTACCTTCTCATCCTGTTGGTG
ATTCGAGCCAGGAGGTTCACCAAGCACTAGACTCGAGCAGGTACTTCCAT
ACAACTAACGGTTGGCTGAGTGATGATTCGGCGGTACCTTCTCATCCCGT
TGGTGATTCGAGCCAGGAGGTTCACCGAGCACTAGACTCGAGCGGGTACT
TCCATACAACTAACGGTGGGCTGATTGATGATTCGGCGGTACCTTCTCAT
TTCGTTGGTGATTCGAGCCAGGAGGTTCACCGAGCACTAGACTCGAAGGG
GTACTTCCATACCACTAACGGTGGACTGATTGATTATTCGAGCAGGTCTG
TTTGTACTTTAGATGATTCGGAGGTACCTCCTCATTCCGTTGGAGGTTTG
AGTCAGAGGGCTCACAGTGAGGACTCGAGCGGGTACCTTCATCCTGATAA
CGCTGGTTTGTAAGATCAGTCTGAACTAGGAGATTCTGATGCTGAAGATG
TGGTTCTAGAAGAATCTGGTCATCATAGTGTCTCCCCTATCATATCAGAT
CAATTATTGAATAGTACTAAAGATGAAATCTCCGACGGCTCCAAGGATGA
ATTTGAGGATGAACCTTC
Run BLAST on NCBI

transcript from alignment at sc0001483:39740..40978-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036598 ID=TCONS_00036598|Name=TCONS_00036598|organism=Clytia hemisphaerica|type=transcript|length=1239bp|location=Sequence derived from alignment at sc0001483:39740..40978- (Clytia hemisphaerica)
GTACAGTAATAAAATAGTACAGTAATAAAAAGCGTGTTAAAGATAGTACA
CTAATAGGGTACGCACAATTAGCAGTGTCACATGAAAAAGGTGTTCAAAA
GCTAAAGGAGAGCACATATTAGAATCGAGGCGAACAAGAGTCATACTACT
TTGACCCCGGTTGTCATTGAACCCACTGTGACAGCTCAAGAATCTGTTAA
TCAAGCAAGGGAAATGAGCAAGTTGTCTAGCGCAGATCTTGAATTTTTTT
GTGACACCACTCATACATATTGTACAGCATGGACCTACACCTGATGATTC
AAGCACCGGAACCATAGATGATTCGGTGGTACCTTCTCATCCTGTTGGTG
ATTCGAGCCAGGAGGCTCACCAAGCACTAGACTCGAGCGGGTACTTCCAT
ACAACTAACGGTGGGCTGAGTGATGATTCGGTGGTACCTTCTCATTCCGT
TGGTGATTCGAGCCAGGAGGTTCACCAAGCACTAGACTCGAGCAGGTACT
TCCATACAACTAACGGTTGGCTGAGTGATGATTCGGCGGTACCTTCTCAT
CCCGTTGGTGATTCGAGCCAGGAGGCTCACCGAGCACTAGACTCGAGCGG
GTACTTCCATACAACTAACGGTGGGCTGATTGATGATTCGGCGGTACCTT
CTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTGGTGATTCGAGCCAGGAGGTTCACCGAG
CACTAGACTCGAGCGGGTACTTCCATACAACTAACGGTGGGCTGATTGAT
GATTCGGCGGTACCTTCTCATTTCGTTGGTGATTCGAGCCAGGAGGTTCA
CCGAGCACTAGACTCGAAGGGGTACTTCCATACCACTAACGGTGGACTGA
TTGATTATTCGAGCAGGTCTGTTTGTACTTTAGATGATTCGGAGGTACCT
CCTCATTCCGTTGGAGGTTTGAGTCAGAGGGCTCACAGTGAGGACTCGAG
CGGGTACCTTCATCCTGATAACGCTGGTTTGTAAGATCAGTCTGAACTAG
GAGATTCTGATGCTGAAGATGTGGTTCTAGAAGAATCTGGTCATCATAGT
GTCTCCCCTATCATATCAGATCAATTATTGAATAGTACTAAAGATGAAAT
CTCCGACGGCTCCAAGGATGAATTTGAGGATGAACCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021600XLOC_021600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036598-exon-sc0001483-1575043694:40615..40978TCONS_00036598-exon-sc0001483-1575043694:40615..40978Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1575043694:40405..40509TCONS_00036598-exon-sc0001483-1575043694:40405..40509Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1575043694:39740..40188TCONS_00036598-exon-sc0001483-1575043694:39740..40188Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1510915933:40615..40978TCONS_00036598-exon-sc0001483-1510915933:40615..40978Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1510915933:40405..40509TCONS_00036598-exon-sc0001483-1510915933:40405..40509Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1510915933:39740..40188TCONS_00036598-exon-sc0001483-1510915933:39740..40188Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1491911889:40615..40978TCONS_00036598-exon-sc0001483-1491911889:40615..40978Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1491911889:40405..40509TCONS_00036598-exon-sc0001483-1491911889:40405..40509Clytia hemisphaericaexon
TCONS_00036598-exon-sc0001483-1491911889:39740..40188TCONS_00036598-exon-sc0001483-1491911889:39740..40188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001483supercontigsc0001483:39740..40978 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.865431	0.958503	0.76825	0.148515	2.32072	2.21533	2.81375	4.52859	3.98795	2.73057	5.21116	5.13247	3.20943	3.45166	0.669582	0.701326	1.13698	1.11962	0.372349	0.446736	1.64494	2.40704	0.667207	0.666762	3.254	7.49723	0.548909	0.732263	1.00229	1.07513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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