TCONS_00036594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036594
Unique NameTCONS_00036594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036594 ID=TCONS_00036594|Name=TCONS_00036594|organism=Clytia hemisphaerica|type=transcript|length=1829bp
Ncgggtaggctaaaaacaagctgcgacaaaaaagactccggagcataccc
tgcgagtgcatgttttgcaggggtgtcgcaccgccccTGGCACTAAAAAT
TACATACATATGTTTTAAAGAGTATGTAAGAAAGACAAGAACTTTTTCAG
CaagtactttttcttttttatataaggtaTTTGAATTTGAGGGAATCAGA
AGCTATATATACTAACGTTTACTAAAAGTAGTAAATAATACTTTATTTCA
AGTCCCGTAGTGTTAGCTACTAAAACAGTGAATAATCACAATACTGtata
aataaattcaaacatTTCAACAGGGCCCAAAGGACGAGGGGTAAGAAAAG
AGTAAAAGGTAAAGAGAGCGTTTAAAATTCTACAAGAAGAGAATTAAACT
AGACCAATAAAAGAAGGGTTTACGTAAGGGTTTGGACTATAATTTTGGTA
TTCTTtcttttcgaaagaaaaaaaacagaaaaatcttCGTACTTTTGTCC
CTGTTCTCTATATCttataacttaaaaaaaaaaagcgaCACTCTGTGATA
CTTCTAAACGTGATAGGACTATCAGGTGTCACTatcaaaaattggctttt
gctTTTTGCTCTAAATATATAATTAGTAAATGCTGCTAAAAATTTGTATT
TTCATGGTTTTCTGAAAAAAAATCAGCGACACTCTATGATACTTCTAAAC
CTAATAGGACTATCAGGCGTCACTCGAGTGTTGAAGATTATTATCAAATA
TTGgattttgctttttgcttttaaaCATATGTAGTAAACGCtgttaaaaa
aattgtatttacatggttttcttaaaagaaaatcaGCAACACTCTATGAT
ACTTGTAAACCTGATAGGACTATCAGGCGTCACTCGAGTGTTGAAGATTA
TTATCAAAAACTGgattttgctttttgcttttaaaCATATGTAGTAAACG
CTgttaaaaatttgtattttctgaaaaaaaatcagcgaCACTCTATGATA
CTTCTAAACCTAATAGGACTATCAGGCGTCACTCGAGTGTTGAAGATTAT
TATCAAATATTAgattttgctttttgcttttaaaCATATGTAGTAAACGC
TGTTAAAAATTTGTATTTACATGgttttctgaaaataaaatcaGCAACAC
TCTATGATACTTCTAAACCTGATAGGACTATCAGGCGTCACTCGAGTGTT
GAAGATTATTATCAAATATTGGATTTTGCTTTTTGCTTTTAAACATATGT
AGTAAACGCTGTTAAAAATTTGTATTTACATAGTTTTCTGAAAAGAAAAT
CAGCAACACTCTATGATACTTGTAAACCTGATAGGACTATCAGGCGTCAC
TCGAGTGTTGAAGACTAttatcaaaaattggattttgctttttgctttta
aaCATATGTAGTAAACGCTGTCAAtggttttctgaaaaaaaatcagcgaC
ACTCTATGATACTTCTAAACCTGATAGGACTATCAGGCGTCACTCGAGTG
TTGATGATTAttatcaaaaattggattttgctttttgcttttaaaCATAT
AATTAGTAAATGCTGTTAAAAATTTGTACTTTCAtggttaaaaaaaaatc
agCGACACTCTATGATACTTCTAAACCTGATAGGACTATCAGGCGTCACT
CGAGCGTTGAAGATTAttatcaaaaattggatttagctTTTTTGCTATTT
AAAAAACATATAATTAGTAAAGGCTGTTAAAAATTTGTACTTTcatggtt
taaaaaaaatcagcgACACTCTATGATACTTCTAAACCTGATAGGACTAT
CAGGCGTCACTCGAGTGTTGAGGATTGTC
Run BLAST on NCBI

transcript from alignment at sc0001483:50767..52938+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036594 ID=TCONS_00036594|Name=TCONS_00036594|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at sc0001483:50767..52938+ (Clytia hemisphaerica)
Ncgggtaggctaaaaacaagctgcgacaaaaaagactccggagcataccc
tgcgagtgcatgttttgcaggggtgtcgcaccgccccTGGCACTAAAAAT
TACATACATATGTTTTAAAGAGTATGTAAGAAAGACAAGAACTTTTTCAG
CaagtactttttcttttttatataaggtaTTTGAATTTGAGGGAATCAGA
AGCTATATATACTAACGTTTACTAAAAGTAGTAAATAATACTTTATTTCA
AGTCCCGTAGTGTTAGCTACTAAAACAGTGAATAATCACAATACTGtata
aataaattcaaacatTTCAACAGGGCCCAAAGGACGAGGGGTAAGAAAAG
AGTAAAAGGTAAAGAGAGCGTTTAAAATTCTACAAGAAGAGAATTAAACT
AGACCAATAAAAGAAGGGTTTACGTAAGGGTTTGGACTATAATTTTGGTA
TTCTTtcttttcgaaagaaaaaaaacagaaaaatcttCGTACTTTTGTCC
CTGTTCTCTATATCttataacttaaaaaaaaaaagcgaCACTCTGTGATA
CTTCTAAACGTGATAGGACTATCAGGTGTCACTatcaaaaattggctttt
gctTTTTGCTCTAAATATATAATTAGTAAATGCTGCTAAAAATTTGTATT
TTCATGGTTTTCTGAAAAAAAATCAGCGACACTCTATGATACTTCTAAAC
CTAATAGGACTATCAGGCGTCACTCGAGTGTTGAAGATTATTATCAAATA
TTGgattttgctttttgcttttaaaCATATGTAGTAAACGCtgttaaaaa
aattgtatttacatggttttcttaaaagaaaatcaGCAACACTCTATGAT
ACTTGTAAACCTGATAGGACTATCAGGCGTCACTCGAGTGTTGAAGATTA
TTATCAAAAACTGgattttgctttttgcttttaaaCATATGTAGTAAACG
CTgttaaaaatttgtattttctgaaaaaaaatcagcgaCACTCTATGATA
CTTCTAAACCTAATAGGACTATCAGGCGTCACTCGAGTGTTGAAGATTAT
TATCAAATATTAgattttgctttttgcttttaaaCATATGTAGTAAACGC
TGTTAAAAATTTGTATTTACATGgttttctgaaaataaaatcaGCAACAC
TCTATGATACTTCTAAACCTGATAGGACTATCAGGCGTCACTCGAGTGTT
GAAGATTATTATCAAATATTGGATTTTGCTTTTTGCTTTTAAACATATGT
AGTAAACGCTGTTAAAAATTTGTATTTACATAGTTTTCTGAAAAGAAAAT
CAGCAACACTCTATGATACTTGTAAACCTGATAGGACTATCAGGCGTCAC
TCGAGTGTTGAAGACTAttatcaaaaattggattttgctttttgctttta
aaCATATGTAGTGAACGCTgttaaaaatttgtattttcatggttttctga
aaaaaaatcaggaaCACTCTATAATACTTCTAAACCTAATGGGAATATCA
GGCGTCCCTGATAGGACTATCAGGCGTTACTCGAGTGTTGAAGATTATta
tcaaaaattgcattttgctttttgcttttaaaCATATGTAGTAAACGCTG
TCAAtggttttctgaaaaaaaatcagcgaCACTCTATGATACTTCTAAAC
CTGATAGGACTATCAGGCGTCACTCGAGTGTTGATGATTAttatcaaaaa
ttggattttgctttttgcttttaaaCATATGCAGTAAACGCTGTTAAAAA
TTTGtatctttatgattttttgaaaaaaagtcagcgACACTCTATGATAC
TTCTAAACCTGATAAGACTATCAGGCGTCACTCGAGTGTTGAAGATTAtt
atcaaaaattggatttagctTTTTTGCTATTTAAAAAACATATAATTAGT
AAATGCTGTTAAAAATTTGTACTTTCAtggttaaaaaaaaatcagCGACA
CTCTATGATACTTCTAAACCTGATAGGACTATCAGGCGTCACTCGAGCGT
TGAAGATTAttatcaaaaattggatttagctTTTTTGCTATTTAAAAAAC
ATATAATTAGTAAAGGCTGTTAAAAATTTGTACTTTcatggtttaaaaaa
aatcagcgACACTCTATGATACTTCTAAACCTGATAGGACTATCAGGCGT
CACTCGAGTGTTGAGGATTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021599XLOC_021599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036594-exon-sc0001483-1491911889:50767..52169TCONS_00036594-exon-sc0001483-1491911889:50767..52169Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1510915933:50767..52169TCONS_00036594-exon-sc0001483-1510915933:50767..52169Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1575043694:50767..52169TCONS_00036594-exon-sc0001483-1575043694:50767..52169Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1491911889:52350..52492TCONS_00036594-exon-sc0001483-1491911889:52350..52492Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1510915933:52350..52492TCONS_00036594-exon-sc0001483-1510915933:52350..52492Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1575043694:52350..52492TCONS_00036594-exon-sc0001483-1575043694:52350..52492Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1491911889:52656..52938TCONS_00036594-exon-sc0001483-1491911889:52656..52938Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1510915933:52656..52938TCONS_00036594-exon-sc0001483-1510915933:52656..52938Clytia hemisphaericaexon
TCONS_00036594-exon-sc0001483-1575043694:52656..52938TCONS_00036594-exon-sc0001483-1575043694:52656..52938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001483supercontigsc0001483:50767..52938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111197	0.173156	0.247961	0.171548	0	0	0	0.000138401	0.440689	0.91711	0.218438	1.03493	0	0.217998	0.113946	0.0980663	0.118064	0.172643	0.119591	0.100897	0.215083	0.128608	0.104619	0.119186	0.510677	0	0.181906	0.098027	0.0491759	0.100786
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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