TCONS_00036585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036585
Unique NameTCONS_00036585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036585 ID=TCONS_00036585|Name=TCONS_00036585|organism=Clytia hemisphaerica|type=transcript|length=560bp
TCGGTAGATTGTGTTTCGTGTGTTTTACAGACCAGCGTGCTTTATACTAA
AGGATAGGTCTGCAGATTATATTATTCATGTTCCAGCTACAGAGATACAA
CCTGCGGATtacttttataatatttttcaagatgTCGGCAAGAGCATGTG
TATTTCTCTGTGGTTTCTTTCACTTTAATTGAATGGTCTAGTACTTGTAT
TTTATTTTACCAATCTCCTTGGCAATGTATGTAGTTGAAAGGAGACTTAT
CAAGGTTGTTGTCTGCGGAGTTTCGATCCATGATTTTAAGTATTTCGTTA
GCAATCATAAAGGTTTGTGTAATGCAATAATATGTAGTTTGGCAGAGTCA
TATTATTATTTGGATTTCCTAGAAACATAAAATGGGTGTTTGATCTTTCC
TTGGCTCTACTACTAAGAACTTTGTACTCTTTAAAACATGGATTTTTATG
CTTTTTATGTTGGAAATTGTAACTATAACTTAGGTTTATAATCCATAATC
TCATGCAGAGGGCAGGCTCttctttttctatctttttcttAACCTTCAGC
GAAACAAGAC
Run BLAST on NCBI

transcript from alignment at sc0001481:52805..53364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036585 ID=TCONS_00036585|Name=TCONS_00036585|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at sc0001481:52805..53364 (Clytia hemisphaerica)
GTCTTGTTTCGCTGAAGGTTaagaaaaagatagaaaaagaaGAGCCTGCC
CTCTGCATGAGATTATGGATTATAAACCTAAGTTATAGTTACAATTTCCA
ACATAAAAAGCATAAAAATCCATGTTTTAAAGAGTACAAAGTTCTTAGTA
GTAGAGCCAAGGAAAGATCAAACACCCATTTTATGTTTCTAGGAAATCCA
AATAATAATATGACTCTGCCAAACTACATATTATTGCATTACACAAACCT
TTATGATTGCTAACGAAATACTTAAAATCATGGATCGAAACTCCGCAGAC
AACAACCTTGATAAGTCTCCTTTCAACTACATACATTGCCAAGGAGATTG
GTAAAATAAAATACAAGTACTAGACCATTCAATTAAAGTGAAAGAAACCA
CAGAGAAATACACATGCTCTTGCCGAcatcttgaaaaatattataaaagt
aATCCGCAGGTTGTATCTCTGTAGCTGGAACATGAATAATATAATCTGCA
GACCTATCCTTTAGTATAAAGCACGCTGGTCTGTAAAACACACGAAACAC
AATCTACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021592XLOC_021592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036585-exon-sc0001481-1491911889:52805..53364TCONS_00036585-exon-sc0001481-1491911889:52805..53364Clytia hemisphaericaexon
TCONS_00036585-exon-sc0001481-1510915933:52805..53364TCONS_00036585-exon-sc0001481-1510915933:52805..53364Clytia hemisphaericaexon
TCONS_00036585-exon-sc0001481-1575043694:52805..53364TCONS_00036585-exon-sc0001481-1575043694:52805..53364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:52805..53364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.466516	0.394261	0.801105	0.111965	0.408921	0.430846	0.519798	0.121657	0.17035	0.105503	0	0.0673162	0.134445	0.0698113	0.344366	0.061593	0	0.077772	0	0.224869	0.879536	0.143002	0.141367	0.105363	0	0.38741	0.554382	0.147913	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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