TCONS_00036582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036582
Unique NameTCONS_00036582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036582 ID=TCONS_00036582|Name=TCONS_00036582|organism=Clytia hemisphaerica|type=transcript|length=830bp
ACAAGGTAGTCAAAAAGGAGACGGAAATAATGGACACAAGATGGAAGCTT
ATTGAATTCACTTATTCAATGCCGGAAGAATCGCTAAGGCGTATTAGTGA
GTGTCCACATAGTTTTAGCGTTTTGTTGACACGCGGAATGGAAGATTAGT
TTGGAGCGATGAGACTTTAAGTGTTGATATTGGTTTATGAGACTAACATG
TTGTTGTGTTGTTGAAGCCCAGTTTTTTAAGGTGCGTAACCAATGCGTAA
CCACATGTGTAACCAAGGCAAAACAGGAAATTATGTAGAATTTGACTGCG
TAACCATGCGTCaccacttttttttaaaagtaatatataatatatattat
atattactttaaaaaaaaaagttggttatGCATGGTTACGCATTGATTTT
CTACATAATTTCCTGTTTTGCCTTGGTTATGCATGTGGTTACGCACTGGT
TACGCATGAAAAATCTTGATAAATATCTAATATGATACATATTAAACTAG
GCTATGTACATTTTATATAGTTGaccttagtattttgttctcaGACCTTT
CTTTTGAATCATCAATCTCAATCTTTTGGGCATAGAGTTGATTGTTTACG
GTTTGCACAGGGAACTCCATAAAGGTTTTTTCAATCCTGGTGGTAAACTC
ATCATAACTTTCCTTagttgatgttttgatttttggcgtCTTCGGCAAGT
TTTTTGCGAATAAGGTGAAACAAGTTCTCAATTATACTTAAATCAGGTGA
TCTAACGGGAATCTTCACAAGCCCATAATCTTTACTTTCCCAAGTGTCCC
TACACAAGGCGGCGTTCTGTTTTGGACATC
Run BLAST on NCBI

transcript from alignment at sc0001481:41615..42444

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036582 ID=TCONS_00036582|Name=TCONS_00036582|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0001481:41615..42444 (Clytia hemisphaerica)
GATGTCCAAAACAGAACGCCGCCTTGTGTAGGGACACTTGGGAAAGTAAA
GATTATGGGCTTGTGAAGATTCCCGTTAGATCACCTGATTTAAGTATAAT
TGAGAACTTGTTTCACCTTATTCGCAAAAAACTTGCCGAAGacgccaaaa
atcaaaacatcaactAAGGAAAGTTATGATGAGTTTACCACCAGGATTGA
AAAAACCTTTATGGAGTTCCCTGTGCAAACCGTAAACAATCAACTCTATG
CCCAAAAGATTGAGATTGATGATTCAAAAGAAAGGTCtgagaacaaaata
ctaaggtCAACTATATAAAATGTACATAGCCTAGTTTAATATGTATCATA
TTAGATATTTATCAAGATTTTTCATGCGTAACCAGTGCGTAACCACATGC
ATAACCAAGGCAAAACAGGAAATTATGTAGAAAATCAATGCGTAACCATG
Cataaccaacttttttttttaaagtaatatataatatatattatatatta
cttttaaaaaaaagtggtGACGCATGGTTACGCAGTCAAATTCTACATAA
TTTCCTGTTTTGCCTTGGTTACACATGTGGTTACGCATTGGTTACGCACC
TTAAAAAACTGGGCTTCAACAACACAACAACATGTTAGTCTCATAAACCA
ATATCAACACTTAAAGTCTCATCGCTCCAAACTAATCTTCCATTCCGCGT
GTCAACAAAACGCTAAAACTATGTGGACACTCACTAATACGCCTTAGCGA
TTCTTCCGGCATTGAATAAGTGAATTCAATAAGCTTCCATCTTGTGTCCA
TTATTTCCGTCTCCTTTTTGACTACCTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021589XLOC_021589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036582-exon-sc0001481-1491911889:41615..42444TCONS_00036582-exon-sc0001481-1491911889:41615..42444Clytia hemisphaericaexon
TCONS_00036582-exon-sc0001481-1510915933:41615..42444TCONS_00036582-exon-sc0001481-1510915933:41615..42444Clytia hemisphaericaexon
TCONS_00036582-exon-sc0001481-1575043694:41615..42444TCONS_00036582-exon-sc0001481-1575043694:41615..42444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:41615..42444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.23715	4.07314	2.05748	1.13083	17.4013	14.2814	3.77519	4.36098	1.10727	2.3822	1.42656	1.71217	0.958184	0.974415	1.47081	2.36507	1.68791	1.53316	0.2683	1.3981	1.00331	0.687864	0.934568	2.37141	3.83532	4.31704	0.783366	0.348093	0.723343	0.822914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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