TCONS_00036580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036580
Unique NameTCONS_00036580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036580 ID=TCONS_00036580|Name=TCONS_00036580|organism=Clytia hemisphaerica|type=transcript|length=348bp
CAAGCACCGAGTAATATCCCTTCCATGTATTCCTGCCTGCTGCAAGCCAG
TCTCTTCCAAAATCTTTCCTGCTGTGAAAGCAGCACCATCAGCACGGAGC
TTCAAGAGCAATCTGAGGATTATTCGTTCCTTTCGGGCATCCAATTTCTT
TGGCCGGCCTGGATTGTTATGTCGGACATCCATGGAAGCGGTTGCCTGAT
CCAATGGTTTCTTTGCATGGCAGCATATTATTCTCGGTGAAACTTTCAAT
TTATGGAAACGTTGTATCAGTTCGGGGCAACTTACACCATGCTCTTGATG
GAGGACGGCCAGCTTAATTGAATCTCTTCCCGATATCTTCTGATACgt
Run BLAST on NCBI

protein sequence of TCONS_00036580-protein

>TCONS_00036580-protein ID=TCONS_00036580-protein|Name=TCONS_00036580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
TYQKISGRDSIKLAVLHQEHGVSCPELIQRFHKLKVSPRIICCHAKKPLD
QATASMDVRHNNPGRPKKLDARKERIILRLLLKLRADGAAFTAGKILEET
GLQQAGIHGRDITRCL
Run BLAST on NCBI

transcript from alignment at sc0001481:40795..41142

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036580 ID=TCONS_00036580|Name=TCONS_00036580|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0001481:40795..41142 (Clytia hemisphaerica)
acGTATCAGAAGATATCGGGAAGAGATTCAATTAAGCTGGCCGTCCTCCA
TCAAGAGCATGGTGTAAGTTGCCCCGAACTGATACAACGTTTCCATAAAT
TGAAAGTTTCACCGAGAATAATATGCTGCCATGCAAAGAAACCATTGGAT
CAGGCAACCGCTTCCATGGATGTCCGACATAACAATCCAGGCCGGCCAAA
GAAATTGGATGCCCGAAAGGAACGAATAATCCTCAGATTGCTCTTGAAGC
TCCGTGCTGATGGTGCTGCTTTCACAGCAGGAAAGATTTTGGAAGAGACT
GGCTTGCAGCAGGCAGGAATACATGGAAGGGATATTACTCGGTGCTTG

Coding sequence (CDS) from alignment at sc0001481:40795..41142

>TCONS_00036580 ID=TCONS_00036580|Name=TCONS_00036580|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0001481:40795..41142 (Clytia hemisphaerica)
acGTATCAGAAGATATCGGGAAGAGATTCAATTAAGCTGGCCGTCCTCCA
TCAAGAGCATGGTGTAAGTTGCCCCGAACTGATACAACGTTTCCATAAAT
TGAAAGTTTCACCGAGAATAATATGCTGCCATGCAAAGAAACCATTGGAT
CAGGCAACCGCTTCCATGGATGTCCGACATAACAATCCAGGCCGGCCAAA
GAAATTGGATGCCCGAAAGGAACGAATAATCCTCAGATTGCTCTTGAAGC
TCCGTGCTGATGGTGCTGCTTTCACAGCAGGAAAGATTTTGGAAGAGACT
GGCTTGCAGCAGGCAGGAATACATGGAAGGGATATTACTCGGTGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021587XLOC_021587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036580-exon-sc0001481-1491911889:40795..41142TCONS_00036580-exon-sc0001481-1491911889:40795..41142Clytia hemisphaericaexon
TCONS_00036580-exon-sc0001481-1510915933:40795..41142TCONS_00036580-exon-sc0001481-1510915933:40795..41142Clytia hemisphaericaexon
TCONS_00036580-exon-sc0001481-1575043694:40795..41142TCONS_00036580-exon-sc0001481-1575043694:40795..41142Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036580-proteinTCONS_00036580-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:40795..41142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.14399	4.14249	3.37981	1.484	1.39629	0.543981	0	0.64417	1.05808	1.06565	1.42641	1.01991	1.05854	1.10254	0.318864	1.08873	2.15437	0.94518	0.813962	0.318018	0.246776	0.361106	3.1327	2.36875	2.68625	0.801708	0.386253	0	0.849873	1.05677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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