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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036577 ID=TCONS_00036577|Name=TCONS_00036577|organism=Clytia hemisphaerica|type=transcript|length=810bp
CCCTTGATAACGATAATAGCAAACTATCCCTCATGTGCCTAAATGCAGAT
GAAAGAGGAAGGGTTGGTCAATATGTCTTAGCATGGTTCCATCACCGGTT
TTCTGAAATGTCATCGAATCTTTTATATACAGAGAGTGATGTCCCTTTTG
GTTGTATaccaatattcaatttttttggtgaTATATTTCAATTGAGAGCC
ATTGGAGAGCGCAATCTGTATGATAAAGTGCTTGAATCGACAGATCCAAT
TGATATAGCAGGTGGGCTTGTCTACAAGAATTTTGTTGATGTATTTATAT
TAGAAGAAATTATGCGACAACAGTCTGGTCAAGCAGCTTTGCTGAGACGC
TTGGATAATCTGCGAACTGGTAATGTTACTAAAAAGGATTGGGAGGAAAT
TAATAATCGTTGTTATGCTAATCTACCAGCTGAAGATAAAATTCAATTTG
ATAATGAAACTTCGGATGTTATTTGCTTGACAGAGACATGGAAAGAAGCC
AAAAAGTATAACCGTTCTGTTTTAAATACGAAAATTTACAATAGTGAAAA
AGTGGTATGCGCCGAGTTTAAAAGTATTGGCCATGGGGTACATGATAATA
CTGCAAAAGAGTCCTTGTCACAAATACCGAACAGAACAGTCATCGCTGCA
GGATGTAGagtaattttaacaaaaaatcaaCGGTGTATGACTAGGCTTGG
TTTGAACAATGGTGCAATAGGAACTGTCGTTAGTATTATTTATAAACCTA
ACGTTAGACCACCCCAGATGCCAGAGTTTGTTATTGTTGACTTTCCAAGA
TACAAAGGCC Run BLAST on NCBI protein sequence of TCONS_00036577-protein >TCONS_00036577-protein ID=TCONS_00036577-protein|Name=TCONS_00036577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
LDNDNSKLSLMCLNADERGRVGQYVLAWFHHRFSEMSSNLLYTESDVPFG
CIPIFNFFGDIFQLRAIGERNLYDKVLESTDPIDIAGGLVYKNFVDVFIL
EEIMRQQSGQAALLRRLDNLRTGNVTKKDWEEINNRCYANLPAEDKIQFD
NETSDVICLTETWKEAKKYNRSVLNTKIYNSEKVVCAEFKSIGHGVHDNT
AKESLSQIPNRTVIAAGCRVILTKNQRCMTRLGLNNGAIGTVVSIIYKPN
VRPPQMPEFVIVDFPRYKG Run BLAST on NCBI transcript from alignment at sc0001481:18266..19075 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036577 ID=TCONS_00036577|Name=TCONS_00036577|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at sc0001481:18266..19075 (Clytia hemisphaerica)
GGCCTTTGTATCTTGGAAAGTCAACAATAACAAACTCTGGCATCTGGGGT
GGTCTAACGTTAGGTTTATAAATAATACTAACGACAGTTCCTATTGCACC
ATTGTTCAAACCAAGCCTAGTCATACACCGttgattttttgttaaaatta
ctCTACATCCTGCAGCGATGACTGTTCTGTTCGGTATTTGTGACAAGGAC
TCTTTTGCAGTATTATCATGTACCCCATGGCCAATACTTTTAAACTCGGC
GCATACCACTTTTTCACTATTGTAAATTTTCGTATTTAAAACAGAACGGT
TATACTTTTTGGCTTCTTTCCATGTCTCTGTCAAGCAAATAACATCCGAA
GTTTCATTATCAAATTGAATTTTATCTTCAGCTGGTAGATTAGCATAACA
ACGATTATTAATTTCCTCCCAATCCTTTTTAGTAACATTACCAGTTCGCA
GATTATCCAAGCGTCTCAGCAAAGCTGCTTGACCAGACTGTTGTCGCATA
ATTTCTTCTAATATAAATACATCAACAAAATTCTTGTAGACAAGCCCACC
TGCTATATCAATTGGATCTGTCGATTCAAGCACTTTATCATACAGATTGC
GCTCTCCAATGGCTCTCAATTGAAATATAtcaccaaaaaaattgaatatt
ggtATACAACCAAAAGGGACATCACTCTCTGTATATAAAAGATTCGATGA
CATTTCAGAAAACCGGTGATGGAACCATGCTAAGACATATTGACCAACCC
TTCCTCTTTCATCTGCATTTAGGCACATGAGGGATAGTTTGCTATTATCG
TTATCAAGGG Coding sequence (CDS) from alignment at sc0001481:18266..19075 >TCONS_00036577 ID=TCONS_00036577|Name=TCONS_00036577|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0001481:18266..19075 (Clytia hemisphaerica)
GCCTTTGTATCTTGGAAAGTCAACAATAACAAACTCTGGCATCTGGGGTG
GTCTAACGTTAGGTTTATAAATAATACTAACGACAGTTCCTATTGCACCA
TTGTTCAAACCAAGCCTAGTCATACACCGttgattttttgttaaaattac
tCTACATCCTGCAGCGATGACTGTTCTGTTCGGTATTTGTGACAAGGACT
CTTTTGCAGTATTATCATGTACCCCATGGCCAATACTTTTAAACTCGGCG
CATACCACTTTTTCACTATTGTAAATTTTCGTATTTAAAACAGAACGGTT
ATACTTTTTGGCTTCTTTCCATGTCTCTGTCAAGCAAATAACATCCGAAG
TTTCATTATCAAATTGAATTTTATCTTCAGCTGGTAGATTAGCATAACAA
CGATTATTAATTTCCTCCCAATCCTTTTTAGTAACATTACCAGTTCGCAG
ATTATCCAAGCGTCTCAGCAAAGCTGCTTGACCAGACTGTTGTCGCATAA
TTTCTTCTAATATAAATACATCAACAAAATTCTTGTAGACAAGCCCACCT
GCTATATCAATTGGATCTGTCGATTCAAGCACTTTATCATACAGATTGCG
CTCTCCAATGGCTCTCAATTGAAATATAtcaccaaaaaaattgaatattg
gtATACAACCAAAAGGGACATCACTCTCTGTATATAAAAGATTCGATGAC
ATTTCAGAAAACCGGTGATGGAACCATGCTAAGACATATTGACCAACCCT
TCCTCTTTCATCTGCATTTAGGCACATGAGGGATAGTTTGCTATTATCGT
TATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036577-exon-sc0001481-1491911889:18266..19075 | TCONS_00036577-exon-sc0001481-1491911889:18266..19075 | Clytia hemisphaerica | exon |
| TCONS_00036577-exon-sc0001481-1510915933:18266..19075 | TCONS_00036577-exon-sc0001481-1510915933:18266..19075 | Clytia hemisphaerica | exon |
| TCONS_00036577-exon-sc0001481-1575043694:18266..19075 | TCONS_00036577-exon-sc0001481-1575043694:18266..19075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001481 | supercontig | sc0001481:18266..19075 . |
Blast
The following BLAST results are available for this feature:
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