TCONS_00036575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036575
Unique NameTCONS_00036575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036575 ID=TCONS_00036575|Name=TCONS_00036575|organism=Clytia hemisphaerica|type=transcript|length=383bp
aaaaaatttgaatctgTTGTTTAATGCTTTGATATAGTTCAAACTACACA
ATAATGAATGGGATGAATGTAATTCAAGTTCAACGACTTTCAGCAGATGT
TAATTTTGTGCGTGGGAAATTTCAACATCTTAAAGTTGGCCCAGTGCAGA
ATATTATGCATAATCATCAGCAGCTAACAATCTGCATCTTAAAAGAGTTG
TGCAAGGAGCACTTCTTAGAAGCTGGAGAAGAGAAACAATGTattctgat
gacgtcaccagAAGGACCAACCATATGGGCAGATCAACATTTACAGTTTC
TACGAAACAGAAGAGTTTTTTGCCGATTTGCTGATcttgaaaatgatgat
gaaaatgaaCTCTGAAAACTATTTTACTTATAA
Run BLAST on NCBI

protein sequence of TCONS_00036575-protein

>TCONS_00036575-protein ID=TCONS_00036575-protein|Name=TCONS_00036575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MNGMNVIQVQRLSADVNFVRGKFQHLKVGPVQNIMHNHQQLTICILKELC
KEHFLEAGEEKQCILMTSPEGPTIWADQHLQFLRNRRVFCRFADLENDDE
NEL
Run BLAST on NCBI

transcript from alignment at sc0001481:11131..11513

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036575 ID=TCONS_00036575|Name=TCONS_00036575|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0001481:11131..11513 (Clytia hemisphaerica)
TTATAAGTAAAATAGTTTTCAGAGttcattttcatcatcattttcaagAT
CAGCAAATCGGCAAAAAACTCTTCTGTTTCGTAGAAACTGTAAATGTTGA
TCTGCCCATATGGTTGGTCCTTctggtgacgtcatcagaatACATTGTTT
CTCTTCTCCAGCTTCTAAGAAGTGCTCCTTGCACAACTCTTTTAAGATGC
AGATTGTTAGCTGCTGATGATTATGCATAATATTCTGCACTGGGCCAACT
TTAAGATGTTGAAATTTCCCACGCACAAAATTAACATCTGCTGAAAGTCG
TTGAACTTGAATTACATTCATCCCATTCATTATTGTGTAGTTTGAACTAT
ATCAAAGCATTAAACAAcagattcaaatttttt

Coding sequence (CDS) from alignment at sc0001481:11131..11513

>TCONS_00036575 ID=TCONS_00036575|Name=TCONS_00036575|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0001481:11131..11513 (Clytia hemisphaerica)
TCAGAGttcattttcatcatcattttcaagATCAGCAAATCGGCAAAAAA
CTCTTCTGTTTCGTAGAAACTGTAAATGTTGATCTGCCCATATGGTTGGT
CCTTctggtgacgtcatcagaatACATTGTTTCTCTTCTCCAGCTTCTAA
GAAGTGCTCCTTGCACAACTCTTTTAAGATGCAGATTGTTAGCTGCTGAT
GATTATGCATAATATTCTGCACTGGGCCAACTTTAAGATGTTGAAATTTC
CCACGCACAAAATTAACATCTGCTGAAAGTCGTTGAACTTGAATTACATT
CATCCCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021582XLOC_021582Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036575-proteinTCONS_00036575-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036575-exon-sc0001481-1491911889:11131..11513TCONS_00036575-exon-sc0001481-1491911889:11131..11513Clytia hemisphaericaexon
TCONS_00036575-exon-sc0001481-1510915933:11131..11513TCONS_00036575-exon-sc0001481-1510915933:11131..11513Clytia hemisphaericaexon
TCONS_00036575-exon-sc0001481-1575043694:11131..11513TCONS_00036575-exon-sc0001481-1575043694:11131..11513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:11131..11513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19883	0.461721	0.225861	0	0	0.262139	0	0.171818	0.42565	0.206573	0	0.135604	0	0.231557	0.124248	0	0	0	0	0	0	0.233782	0.212542	0.218913	0	0	0	0	0.230572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top