TCONS_00036574 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036574
Unique Name	TCONS_00036574
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2410

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001481:49885..52294-

transcript sequence

>TCONS_00036574 ID=TCONS_00036574|Name=TCONS_00036574|organism=Clytia hemisphaerica|type=transcript|length=2410bp
GctaagaaaaaggtcaaaaccATGGTctggtcttttttttttagattctg
cAAATTTAGAAGACAATAAAGCTGAAGTCCAGAGGAGAATCGAAAGTGAA
TTCCGGAGGCTTTGTGATAGCTACTCAGATGAAGATAAGGTGTTAATAGA
GAAAGAAAGGGTCATCGTGTCATTGGATAAGTTGGTATCGTTGAAGGGGT
CGAAATGTACGGAGGTTGaatgtggaaaactttgcgGAGCGGAATTACGA
TTCAAATGGGTTGGGAATGGGTGCAACAGGACTTTAAAGTGGGAATGCGA
GGATGAACATTATGGGAGCTGGGATTCCTCTGAAATCTTAACAATGAGAA
AGAGAAGGAAAATATTTGTGAATGATATTTTAGTGACAAGCTCTGTTGTG
CTAACTGGTAATAACTGGCAGAAATGCAAAGACCTATTCACTGCTTTGAA
GGTTTGTACTCCTGGGACAACCACGTTCCATAAAAATCAGAATTTGTTTG
TCTCACCAGAAATAAGGATTCTTTGGGATGAGATGAAGGCTATTATTTTC
AGTATTCTTATGAATATGAGGACATTCGTCTTTCTGGTGATGGCAGAAGT
GACTCTCCTGGCCACTGTGCTAAATTTTGTACCTATGTCTTAATGGATGA
CATCCTTAATTGTATCGTCGACCTTGCTGTACTTGATTGTCGTGAAACAG
AAGGTGTGTCTACGCGATTGGAAAAAGAAGGCCTGCTTAGACTCCTCAAT
GACATCAAAGGACGGTTGAAATTGGTAGAGCTAACTACAGACGCATCCTC
TAGTGTTATCAAAGCTATGAGGGAGCTTAAAGAAAAGACAGAGGAATTCA
AAACCTTAATGCACTCTTTAGATACATGGCACAAGGCCAAAGCTCTTAGA
AAAGCCCTTAGCAACGCTGCAAAGTCAAAAGAGTGTGAAGAACTCAGTGA
ATGGATCACACCAATTTAAATTTAAACTAAATTAAAGGTAGACTAAGGTC
TGATTTCTCACGTACGAATACAAATCCTAACTTTTTCGCATTATAATTTT
GActgctttgtaaaaatcataaagTCCACTCTACAATGCATATTTCAATA
ATAGATAGTTCCCTTCCAGGTCACCAAAATATAGAATTTATGGTCTTCTC
CTTTTATTTATGTATAGGATATGTGGCTTGGAGTCTTGCATCACGTTTGT
GGCAAACATGTTTGGGCAGGAGGTCAATGCTCGCATGGAGATTTAAAGGA
TGAAGCATCTAAAAAGCCACTCGATAAAAACTCTAAAGCGATGGAAGCAC
TGAGGAATGCTGTTCTTGACAAAACTTTTATTGACAGTCTCAAGTTTTAC
ACACGTTTCCGGTATGTACTTTTGGTAGCTTTTATCTTTCGCACTCATAA
TCTGGGTTGGGACCGATCGATCGATACGACTTTCTCTGTTCCAAGACAAT
TGGGAGCTTTTTGAACAAATAAATACAGCATCGAACAGATAGCTTTATAA
TGCTAGGTAAATTTAGTTTATTCAATAAAGAGTctcaattttggattttt
ccAGAAATTCCGATTCTTATTTATTCTTCACCGTTTTCCTACTAGACACA
CTGGACAGTTAGAAAGTTTCAATTCAATGCTTCTCAAGTATGCGCCAAAA
CGCGTTGCATTCAGCTATAAATACTTTACTGATCGCATGTTCCTGGCAGC
TATGGACCATAATATTCATCTTTCCCGGAAGCCTGTTGTTACTAGATATG
GTAGATATCTCCAAAGACGAAAGTTTAGCAAGCGCTCAAAGCAGTGGTGT
GCACAATCGGTCAAGAAGGCAAAAAATTATCCCCACTTACCCACCCTTTT
GGCTGCCATCTTGAAGAGACGACGCAACCACACCGAGAACGTTGGTAATG
CATTGAAAACACACTCTATGCCTAGTGGCGTCACCGTACCTACGCTTGGC
GGTGTCCCACCAAAAACATCGGAATTGGTTGAGAAGCATGTTTCTCGGCT
CACCAAGAAATAGCTGttattaaaaagattttattttcgagATTTTTGCC
CTTcttatgaaaatatatttttgtttagGACGTTTTCTTATTTCAGGATT
ACGTAAATGTATGCGATGGAAAGATTTCTGGGCAGTTTGGGAccttttct
ttttggatttaGCACTCGTATCTCCATCTATCCTACAATCATTAGAGTTT
GTTGTTGGGAGGATTCTTacagttttatatttttgaaagtgtGGGATATG
CTAGACTGTCACTCTGTAAATAATGTACATTTTGGTAGTTGTAGAATTAG
ATTTATTGAGGTATATACCTGATTTAGATTTATACTGTGCATAGTAGATT
GATTCTGATTTATACTGAGAAATAAGTAGCCGAAGGGAACGTTTGACCCT
CAGTAAGTCC

Run BLAST on NCBI

transcript from alignment at sc0001481:49885..52294-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036574 ID=TCONS_00036574|Name=TCONS_00036574|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at sc0001481:49885..52294- (Clytia hemisphaerica)
GCTAAGAAAAAGGTCAAAACCATGGTCTGGTCTTTTTTTTTTAGATTCTG
CAAATTTAGAAGACAATAAAGCTGAAGTCCAGAGGAGAATCGAAAGTGAA
TTCCGGAGGCTTTGTGATAGCTACTCAGATGAAGATAAGGTGTTAATAGA
GAAAGAAAGGGTCATCGTGTCATTGGATAAGTTGGTATCGTTGAAGGGGT
CGAAATGTACGGAGGTTGAATGTGGAAAACTTTGCGGAGCGGAATTACGA
TTCAAATGGGTTGGGAATGGGTGCAACAGGACTTTAAAGTGGGAATGCGA
GGATGAACATTATGGGAGCTGGGATTCCTCTGAAATCTTAACAATGAGAA
AGAGAAGGAAAATATTTGTGAATGATATTTTAGTGACAAGCTCTGTTGTG
CTAACTGGTAATAACTGGCAGAAATGCAAAGACCTATTCACTGCTTTGAA
GGTTTGTACTCCTGGGACAACCACGTTCCATAAAAATCAGAATTTGTTTG
TCTCACCAGAAATAAGGATTCTTTGGGATGAGATGAAGGCTATTATTTTC
AGTATTCTTATGAATATGAGGACATTCGTCTTTCTGGTGATGGCAGAAGT
GACTCTCCTGGCCACTGTGCTAAATTTTGTACCTATGTCTTAATGGATGA
CATCCTTAATTGTATCGTCGACCTTGCTGTACTTGATTGTCGTGAAACAG
AAGGTGTGTCTACGCGATTGGAAAAAGAAGGCCTGCTTAGACTCCTCAAT
GACATCAAAGGACGGTTGAAATTGGTAGAGCTAACTACAGACGCATCCTC
TAGTGTTATCAAAGCTATGAGGGAGCTTAAAGAAAAGACAGAGGAATTCA
AAACCTTAATGCACTCTTTAGATACATGGCACAAGGCCAAAGCTCTTAGA
AAAGCCCTTAGCAACGCTGCAAAGTCAAAAGAGTGTGAAGAACTCAGTGA
ATGGATCACACCAATTTAAATTTAAACTAAATTAAAGGTAGACTAAGGTC
TGATTTCTCACGTACGAATACAAATCCTAACTTTTTCGCATTATAATTTT
GACTGCTTTGTAAAAATCATAAAGTCCACTCTACAATGCATATTTCAATA
ATAGATAGTTCCCTTCCAGGTCACCAAAATATAGAATTTATGGTCTTCTC
CTTTTATTTATGTATAGGATATGTGGCTTGGAGTCTTGCATCACGTTTGT
GGCAAACATGTTTGGGCAGGAGGTCAATGCTCGCATGGAGATTTAAAGGA
TGAAGCATCTAAAAAGCCACTCGATAAAAACTCTAAAGCGATGGAAGCAC
TGAGGAATGCTGTTCTTGACAAAACTTTTATTGACAGTCTCAAGTTTTAC
ACACGTTTCCGGTATGTACTTTTGGTAGCTTTTATCTTTCGCACTCATAA
TCTGGGTTGGGACCGATCGATCGATACGACTTTCTCTGTTCCAAGACAAT
TGGGAGCTTTTTGAACAAATAAATACAGCATCGAACAGATAGCTTTATAA
TGCTAGGTAAATTTAGTTTATTCAATAAAGAGTCTCAATTTTGGATTTTT
CCAGAAATTCCGATTCTTATTTATTCTTCACCGTTTTCCTACTAGACACA
CTGGACAGTTAGAAAGTTTCAATTCAATGCTTCTCAAGTATGCGCCAAAA
CGCGTTGCATTCAGCTATAAATACTTTACTGATCGCATGTTCCTGGCAGC
TATGGACCATAATATTCATCTTTCCCGGAAGCCTGTTGTTACTAGATATG
GTAGATATCTCCAAAGACGAAAGTTTAGCAAGCGCTCAAAGCAGTGGTGT
GCACAATCGGTCAAGAAGGCAAAAAATTATCCCCACTTACCCACCCTTTT
GGCTGCCATCTTGAAGAGACGACGCAACCACACCGAGAACGTTGGTAATG
CATTGAAAACACACTCTATGCCTAGTGGCGTCACCGTACCTACGCTTGGC
GGTGTCCCACCAAAAACATCGGAATTGGTTGAGAAGCATGTTTCTCGGCT
CACCAAGAAATAGCTGTTATTAAAAAGATTTTATTTTCGAGATTTTTGCC
CTTCTTATGAAAATATATTTTTGTTTAGGACGTTTTCTTATTTCAGGATT
ACGTAAATGTATGCGATGGAAAGATTTCTGGGCAGTTTGGGACCTTTTCT
TTTTGGATTTAGCACTCGTATCTCCATCTATCCTACAATCATTAGAGTTT
GTTGTTGGGAGGATTCTTACAGTTTTATATTTTTGAAAGTGTGGGATATG
CTAGACTGTCACTCTGTAAATAATGTACATTTTGGTAGTTGTAGAATTAG
ATTTATTGAGGTATATACCTGATTTAGATTTATACTGTGCATAGTAGATT
GATTCTGATTTATACTGAGAAATAAGTAGCCGAAGGGAACGTTTGACCCT
CAGTAAGTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021581	XLOC_021581	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036574-exon-sc0001481-1575043694:49885..52294	TCONS_00036574-exon-sc0001481-1575043694:49885..52294	Clytia hemisphaerica	exon
TCONS_00036574-exon-sc0001481-1510915933:49885..52294	TCONS_00036574-exon-sc0001481-1510915933:49885..52294	Clytia hemisphaerica	exon
TCONS_00036574-exon-sc0001481-1491911889:49885..52294	TCONS_00036574-exon-sc0001481-1491911889:49885..52294	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001481	supercontig	sc0001481:49885..52294 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216741	0.346707	0.115017	0.140658	1.13017	0.722308	1.22268	0.764892	0.405098	0.672995	0.283021	0.322053	0.928095	1.10217	0.630629	0.79706	0.762577	0.44943	0.836881	1.38063	0.661373	0.395227	0.354304	0.532246	0.143166	0.0973377	0.794396	0.483126	0.275563	0.373338

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00036574 vs. Swiss-Prot (Human)

BLAST of TCONS_00036574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00036574 (transcript) - C. hemisphaerica