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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036573 ID=TCONS_00036573|Name=TCONS_00036573|organism=Clytia hemisphaerica|type=transcript|length=1013bp
ATAGGATATGTGGCTTGGAGTCTTGCATCACGTTTGTGGCAAACATGTTT
GGGCAGGAGGTCAATGCTCGCATGGAGATTTAAAGGATGAAGCATCTAAA
AAGCCACTCGATAAAAACTCTAAAGCGATGGAAGCACTGAGGAATGCTGT
TCTTGACAAAACTTTTATTGACAGTCTCAAGTTTTACACACGTTTCCGAC
ACACTGGACAGTTAGAAAGTTTCAATTCAATGCTTCTCAAGTATGCGCCA
AAACGCGTTGCATTCAGCTATAAATACTTTACTGATCGCATGTTCCTGGC
AGCTATGGACCATAATATTCATCTTTCCCGGAAGCCTGTTGTTACTAGAT
ATGGTAGATATCTCCAAAGACGAAAGTTTAGCAAGCGCTCAAAGCAGTGG
TGTGCACAATCGGTCAAGAAGGCAAAAAATTATCCCCACTTACCCACCCT
TTTGGCTGCCATCTTGAAGAGACGACGCAACCACACCGAGAACGTTGGTA
ATGCATTGAAAACACACTCTATGCCTAGTGGCGTCACCGTACCTACGCTT
GGCGGTGTCCCACCAAAAACATCGGAATTGGTTGAGAAGCATGTTTCTCG
GCTCACCAAGAAATAGCTGttattaaaaagattttattttcgagATTTTT
GCCCTTcttatgaaaatatatttttgtttagGACGTTTTCTTATTTCAGG
ATTACGTAAATGTATGCGATGGAAAGATTTCTGGGCAGTTTGGGAccttt
tctttttggatttaGCACTCGTATCTCCATCTATCCTACAATCATTAGAG
TTTGTTGTTGGGAGGATTCTTacagttttatatttttgaaagtgtGGGAT
ATGCTAGACTGTCACTCTGTAAATAATGTACATTTTGGTAGTTGTAGAAT
TAGATTTATTGAGGTATATACCTGATTTAGATTTATACTGTGCATAGTAG
ATTGATTCTGATTTATACTGAGAAATAAGTAGCCGAAGGGAACGTTTGAC
CCTCAGTAAGTCC Run BLAST on NCBI protein sequence of TCONS_00036573-protein >TCONS_00036573-protein ID=TCONS_00036573-protein|Name=TCONS_00036573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MWLGVLHHVCGKHVWAGGQCSHGDLKDEASKKPLDKNSKAMEALRNAVLD
KTFIDSLKFYTRFRHTGQLESFNSMLLKYAPKRVAFSYKYFTDRMFLAAM
DHNIHLSRKPVVTRYGRYLQRRKFSKRSKQWCAQSVKKAKNYPHLPTLLA
AILKRRRNHTENVGNALKTHSMPSGVTVPTLGGVPPKTSELVEKHVSRLT
KK Run BLAST on NCBI transcript from alignment at sc0001481:49885..51131- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036573 ID=TCONS_00036573|Name=TCONS_00036573|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at sc0001481:49885..51131- (Clytia hemisphaerica)
ATAGGATATGTGGCTTGGAGTCTTGCATCACGTTTGTGGCAAACATGTTT
GGGCAGGAGGTCAATGCTCGCATGGAGATTTAAAGGATGAAGCATCTAAA
AAGCCACTCGATAAAAACTCTAAAGCGATGGAAGCACTGAGGAATGCTGT
TCTTGACAAAACTTTTATTGACAGTCTCAAGTTTTACACACGTTTCCGGT
ATGTACTTTTGGTAGCTTTTATCTTTCGCACTCATAATCTGGGTTGGGAC
CGATCGATCGATACGACTTTCTCTGTTCCAAGACAATTGGGAGCTTTTTG
AACAAATAAATACAGCATCGAACAGATAGCTTTATAATGCTAGGTAAATT
TAGTTTATTCAATAAAGAGTCTCAATTTTGGATTTTTCCAGAAATTCCGA
TTCTTATTTATTCTTCACCGTTTTCCTACTAGACACACTGGACAGTTAGA
AAGTTTCAATTCAATGCTTCTCAAGTATGCGCCAAAACGCGTTGCATTCA
GCTATAAATACTTTACTGATCGCATGTTCCTGGCAGCTATGGACCATAAT
ATTCATCTTTCCCGGAAGCCTGTTGTTACTAGATATGGTAGATATCTCCA
AAGACGAAAGTTTAGCAAGCGCTCAAAGCAGTGGTGTGCACAATCGGTCA
AGAAGGCAAAAAATTATCCCCACTTACCCACCCTTTTGGCTGCCATCTTG
AAGAGACGACGCAACCACACCGAGAACGTTGGTAATGCATTGAAAACACA
CTCTATGCCTAGTGGCGTCACCGTACCTACGCTTGGCGGTGTCCCACCAA
AAACATCGGAATTGGTTGAGAAGCATGTTTCTCGGCTCACCAAGAAATAG
CTGTTATTAAAAAGATTTTATTTTCGAGATTTTTGCCCTTCTTATGAAAA
TATATTTTTGTTTAGGACGTTTTCTTATTTCAGGATTACGTAAATGTATG
CGATGGAAAGATTTCTGGGCAGTTTGGGACCTTTTCTTTTTGGATTTAGC
ACTCGTATCTCCATCTATCCTACAATCATTAGAGTTTGTTGTTGGGAGGA
TTCTTACAGTTTTATATTTTTGAAAGTGTGGGATATGCTAGACTGTCACT
CTGTAAATAATGTACATTTTGGTAGTTGTAGAATTAGATTTATTGAGGTA
TATACCTGATTTAGATTTATACTGTGCATAGTAGATTGATTCTGATTTAT
ACTGAGAAATAAGTAGCCGAAGGGAACGTTTGACCCTCAGTAAGTCC Coding sequence (CDS) from alignment at sc0001481:49885..51131- >TCONS_00036573 ID=TCONS_00036573|Name=TCONS_00036573|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0001481:49885..51131- (Clytia hemisphaerica)
ACACACTGGACAGTTAGAAAGTTTCAATTCAATGCTTCTCAAGTATGCGC
CAAAACGCGTTGCATTCAGCTATAAATACTTTACTGATCGCATGTTCCTG
GCAGCTATGGACCATAATATTCATCTTTCCCGGAAGCCTGTTGTTACTAG
ATATGGTAGATATCTCCAAAGACGAAAGTTTAGCAAGCGCTCAAAGCAGT
GGTGTGCACAATCGGTCAAGAAGGCAAAAAATTATCCCCACTTACCCACC
CTTTTGGCTGCCATCTTGAAGAGACGACGCAACCACACCGAGAACGTTGG
TAATGCATTGAAAACACACTCTATGCCTAGTGGCGTCACCGTACCTACGC
TTGGCGGTGTCCCACCAAAAACATCGGAATTGGTTGAGAAGCATGTTTCT
CGGCTCACCAAGAAATAGATGTGGCTTGGAGTCTTGCATCACGTTTGTGG
CAAACATGTTTGGGCAGGAGGTCAATGCTCGCATGGAGATTTAAAGGATG
AAGCATCTAAAAAGCCACTCGATAAAAACTCTAAAGCGATGGAAGCACTG
AGGAATGCTGTTCTTGACAAAACTTTTATTGACAGTCTCAAGTTTTACAC
ACGTTTCCGACACACTGGACAGTTAGAAAGTTTCAATTCAATGCTTCTCA
AGTATGCGCCAAAACGCGTTGCATTCAGCTATAAATACTTTACTGATCGC
ATGTTCCTGGCAGCTATGGACCATAATATTCATCTTTCCCGGAAGCCTGT
TGTTACTAGATATGGTAGATATCTCCAAAGACGAAAGTTTAGCAAGCGCT
CAAAGCAGTGGTGTGCACAATCGGTCAAGAAGGCAAAAAATTATCCCCAC
TTACCCACCCTTTTGGCTGCCATCTTGAAGAGACGACGCAACCACACCGA
GAACGTTGGTAATGCATTGAAAACACACTCTATGCCTAGTGGCGTCACCG
TACCTACGCTTGGCGGTGTCCCACCAAAAACATCGGAATTGGTTGAGAAG
CATGTTTCTCGGCTCACCAAGAAATAGATGTGGCTTGGAGTCTTGCATCA
CGTTTGTGGCAAACATGTTTGGGCAGGAGGTCAATGCTCGCATGGAGATT
TAAAGGATGAAGCATCTAAAAAGCCACTCGATAAAAACTCTAAAGCGATG
GAAGCACTGAGGAATGCTGTTCTTGACAAAACTTTTATTGACAGTCTCAA
GTTTTACACACGTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036573-exon-sc0001481-1575043694:50934..51131 | TCONS_00036573-exon-sc0001481-1575043694:50934..51131 | Clytia hemisphaerica | exon |
| TCONS_00036573-exon-sc0001481-1575043694:49885..50699 | TCONS_00036573-exon-sc0001481-1575043694:49885..50699 | Clytia hemisphaerica | exon |
| TCONS_00036573-exon-sc0001481-1510915933:50934..51131 | TCONS_00036573-exon-sc0001481-1510915933:50934..51131 | Clytia hemisphaerica | exon |
| TCONS_00036573-exon-sc0001481-1510915933:49885..50699 | TCONS_00036573-exon-sc0001481-1510915933:49885..50699 | Clytia hemisphaerica | exon |
| TCONS_00036573-exon-sc0001481-1491911889:50934..51131 | TCONS_00036573-exon-sc0001481-1491911889:50934..51131 | Clytia hemisphaerica | exon |
| TCONS_00036573-exon-sc0001481-1491911889:49885..50699 | TCONS_00036573-exon-sc0001481-1491911889:49885..50699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001481 | supercontig | sc0001481:49885..51131 - |
Blast
The following BLAST results are available for this feature:
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