TCONS_00036572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036572
Unique NameTCONS_00036572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036572 ID=TCONS_00036572|Name=TCONS_00036572|organism=Clytia hemisphaerica|type=transcript|length=414bp
aagttaatttattttatttttcagcaaaaaatactaaaatgaaAGTGGAA
AAAAGATTTGACCGATTTTATTGTGAAAAAAGCCCCAAAGCTGCTTGTTC
AACCAATCAGACGACAGACTTCGTTGTGAATAAAGAGCAGCAGGTTAGAG
AGGAAATGGAGGCGCGcatgaataaaatgaaagagCAACATGAGAGAGAA
ATGAACGAGTTAAGGGCAAGTATTATAGAACACCAAAAGGAAAATGAGGA
TCAAAACCAAGACGAAGAAGAAGACATGCTTTTAGAGGAAGGAAACGAAC
TGGAAAACTCACCACCAACAGAAgaACTGACACGTGAAGCCTTCGATTTG
TACAGGGTCACTCACCCAGGACCTACATCCAATAATGCATATCAAAAATG
GAAGAGTCTTGGTG
Run BLAST on NCBI

protein sequence of TCONS_00036572-protein

>TCONS_00036572-protein ID=TCONS_00036572-protein|Name=TCONS_00036572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
VNLFYFSAKNTKMKVEKRFDRFYCEKSPKAACSTNQTTDFVVNKEQQVRE
EMEARMNKMKEQHEREMNELRASIIEHQKENEDQNQDEEEDMLLEEGNEL
ENSPPTEELTREAFDLYRVTHPGPTSNNAYQKWKSLG
Run BLAST on NCBI

transcript from alignment at sc0001481:15285..17202-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036572 ID=TCONS_00036572|Name=TCONS_00036572|organism=Clytia hemisphaerica|type=transcript|length=1918bp|location=Sequence derived from alignment at sc0001481:15285..17202- (Clytia hemisphaerica)
AAGTTAATTTATTTTATTTTTCAGCAAAAAATACTAAAATGAAAGTGGAA
AAAAGATTTGACCGATTTTATTGTGAAAAAAGCCCCAAAGCTGCTTGTTC
AACCAATCAGACGACAGACTTCGTTGTGAATAAAGAGCAGCAGGTTAGAG
AGGAAATGGAGGCGCGCATGAATAAAATGAAAGAGCAACATGAGAGAGAA
ATGAACGAGTTAAGGGCAAGTATTATAGAACACCAAAAGGAAAATGAGGA
TCAAAACCAAGACGAAGAAGAAGACATGCTTTTAGAGGAAGGAAACGAAC
TGGAAAACTCACCACCAACAGAAGTAATTTCAGTTATTTGTATTGTATTA
TCATTCACAAACAAGGGAACGATATTCTTTAAATGATCACGAATTCTAAT
AGTTTAGCCTTCGAAAATAAAAGATACTTAAAAATTTGTAAATTGACGTC
AAATTTTTTTCTGGCTGGTTGTGCTCGTCGAAATGCATCAAAATGGCGAA
AACTAAAGAAATACCAAAAAAAATCGAAATTCAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGTAAAGACGACTGATTTAGAGGCCAACTGT
GCGCCTACAAAATGTTAAATATGATTATTTCATAGAGGTCGATAGACCTG
CGAAATATATTACTATAAATAAAATAAATAAAAAACAAGGAGGTTTCGTT
AACCTCTACAGGAAGTATTGTTCGTCAACGAAAATCCAAAACCAAATAAT
TTTCTCCTTAACAAAATTATATTTTAGGAACTGACACGTGAAGCCTTCGA
TTTGTACAGGGTCACTCACCCAGGACCTACATCCAATAATGCATATCAAA
AATGGAAGAGTCTTGGTG

Coding sequence (CDS) from alignment at sc0001481:15285..17202-

>TCONS_00036572 ID=TCONS_00036572|Name=TCONS_00036572|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0001481:15285..17202- (Clytia hemisphaerica)
GAACTGACACGTGAAGCCTTCGATTTGTACAGGGTCACTCACCCAGGACC
TACATCCAATAATGCATATCAAAAATGGAAGAGTCTTGGTGTTAATTTAT
TTTATTTTTCAGCAAAAAATACTAAAATGAAAGTGGAAAAAAGATTTGAC
CGATTTTATTGTGAAAAAAGCCCCAAAGCTGCTTGTTCAACCAATCAGAC
GACAGACTTCGTTGTGAATAAAGAGCAGCAGGTTAGAGAGGAAATGGAGG
CGCGCATGAATAAAATGAAAGAGCAACATGAGAGAGAAATGAACGAGTTA
AGGGCAAGTATTATAGAACACCAAAAGGAAAATGAGGATCAAAACCAAGA
CGAAGAAGAAGACATGCTTTTAGAGGAAGGAAACGAACTGGAAAACTCAC
CACCAACAGAAGAACTGACACGTGAAGCCTTCGATTTGTACAGGGTCACT
CACCCAGGACCTACATCCAATAATGCATATCAAAAATGGAAGAGTCTTGG
TGTTAATTTATTTTATTTTTCAGCAAAAAATACTAAAATGAAAGTGGAAA
AAAGATTTGACCGATTTTATTGTGAAAAAAGCCCCAAAGCTGCTTGTTCA
ACCAATCAGACGACAGACTTCGTTGTGAATAAAGAGCAGCAGGTTAGAGA
GGAAATGGAGGCGCGCATGAATAAAATGAAAGAGCAACATGAGAGAGAAA
TGAACGAGTTAAGGGCAAGTATTATAGAACACCAAAAGGAAAATGAGGAT
CAAAACCAAGACGAAGAAGAAGACATGCTTTTAGAGGAAGGAAACGAACT
GGAAAACTCACCACCAACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021580XLOC_021580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036572-proteinTCONS_00036572-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036572-exon-sc0001481-1575043694:16880..17202TCONS_00036572-exon-sc0001481-1575043694:16880..17202Clytia hemisphaericaexon
TCONS_00036572-exon-sc0001481-1575043694:15285..15375TCONS_00036572-exon-sc0001481-1575043694:15285..15375Clytia hemisphaericaexon
TCONS_00036572-exon-sc0001481-1510915933:16880..17202TCONS_00036572-exon-sc0001481-1510915933:16880..17202Clytia hemisphaericaexon
TCONS_00036572-exon-sc0001481-1510915933:15285..15375TCONS_00036572-exon-sc0001481-1510915933:15285..15375Clytia hemisphaericaexon
TCONS_00036572-exon-sc0001481-1491911889:16880..17202TCONS_00036572-exon-sc0001481-1491911889:16880..17202Clytia hemisphaericaexon
TCONS_00036572-exon-sc0001481-1491911889:15285..15375TCONS_00036572-exon-sc0001481-1491911889:15285..15375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:15285..17202 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17573	2.51403	0.71453	0.40837	3.95315	3.87289	6.22996	5.83242	3.63243	3.20234	3.92899	3.92804	1.52388	2.5566	2.29988	1.69283	3.2657	2.75141	4.72805	2.69514	0.790003	3.06325	1.20629	0.441716	15.6672	8.45734	3.45621	1.41016	0.938119	2.53883
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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