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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036571 ID=TCONS_00036571|Name=TCONS_00036571|organism=Clytia hemisphaerica|type=transcript|length=1183bp
tataaaaaagaactctattatgaaaatgaaaaaagacacAACGGGAAGTG
CGATACGATtgcataatattttgaaatctaatgatattttttaccatttt
ttggcAAACACGTCTTTGTTATCAAGAGAGAAAAGAAAATAGACAGaaga
agaaggaaaagaaaaatggatGATTTATTTTGTAAATGCAAAAACACCTG
TTGTAGAAGAGATTCCAACCTCAGAAAAGGGTGTCCCTGCAAAACAAGAG
GGGTGAAATGCTCAGAAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTG
ATTGTTGACCGTTGCAAAAATAGAATCCAGCTTGCCGCACTCCAAGATCA
AGATCCACAGCTAAATAAGCAGGCTAGCAATGCTGACGAATGGGACGATT
ATGAAAGCGAATTAAAAGGAGCAAATAAGAAGATACAAGAGTATCTTTGT
GAATTATCAAGAGAAGACTTGATCTCGATAATAATCGAAACGAACAACGA
AGGTAGAGGTTCACTAGACAGCATCAAGGATTCATTAGCATTCGTCAAGG
AAACAACTTCTGAGACCGAGACTACAGACGATGCTCAGGGAAGCCCACCC
CCacccccacccccccccccaccccaaCCCCCATCTTCATCGAAACCAGA
CTGGTGTAAATGTTCGAAATGCAGAGACATGCCTACGTTAGTGGAGAACA
AATGTTGCGGGCGTAAAAACTGCATAACATTGCATGCAAAATTTGGTAAA
TTTTGTCTAGATAAGGACATCTTAATTTTGAATATAAAAGCAAGAGCCGA
TATACGAGCTGAGCAAGTAAACGTTGAGAAGAACAAATTACGTAAAGCCT
CGTATAGACAATTTATTCTTTGGAAACACGGTAGATTGGGAAGATACGAA
AGGAGAGTCGCCCCATCATGTGTTGTGTTAGCAGTACGTAGAAAGTTCCC
CAGTAGAGACGGCGTATACATGGGGTACAAGCCAAGATGAATCTAAAAAT
TGAACGGAAACAATTCGGTGAAGTTTGGAGTTTTATAGATAGCAATATGA
TCGTTGGTTTTGCATTGCGTTACATAGTtgaattatttcaatttttagag
tcgttttgtaatttttatgtttatgttGTATTTGATGGTAAAATCTTATT
CATTACATTGCTATTTGAAGACTCATTTCATCG Run BLAST on NCBI protein sequence of TCONS_00036571-protein >TCONS_00036571-protein ID=TCONS_00036571-protein|Name=TCONS_00036571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MDDLFCKCKNTCCRRDSNLRKGCPCKTRGVKCSEKCSCGKRKRGVIVDRC
KNRIQLAALQDQDPQLNKQASNADEWDDYESELKGANKKIQEYLCELSRE
DLISIIIETNNEGRGSLDSIKDSLAFVKETTSETETTDDAQGSPPPPPPP
PPPQPPSSSKPDWCKCSKCRDMPTLVENKCCGRKNCITLHAKFGKFCLDK
DILILNIKARADIRAEQVNVEKNKLRKASYRQFILWKHGRLGRYERRVAP
SCVVLAVRRKFPSRDGVYMGYKPR Run BLAST on NCBI transcript from alignment at sc0001481:48114..49640+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036571 ID=TCONS_00036571|Name=TCONS_00036571|organism=Clytia hemisphaerica|type=transcript|length=1527bp|location=Sequence derived from alignment at sc0001481:48114..49640+ (Clytia hemisphaerica)
tataaaaaagaactctattatgaaaatgaaaaaagacacAACGGGAAGTG
CGATACGATtgcataatattttgaaatctaatgatattttttaccatttt
ttggcAAACACGTCTTTGTTATCAAGAGAGAAAAGAAAATAGACAGaaga
agaaggaaaagaaaaatggatGATTTATTTTGTAAATGCAAAAACACCTG
TTGTAGAAGAGATTCCAACCTCAGAAAAGGGTGTCCCTGCAAAACAAGAG
GGGTGAAATGCTCAGAAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTG
ATTGTTGACCGTTGCAAAAATAGAATCCAGCTTGCCGCAGTAAGTTCACA
TGGCCTTATAtagtttttggtttttcaaagtctacaaaaaaattcatcat
aaaAAATGGAAGTGTTAGAGAAACTATAAACAGTGTAACCTATTTATCAT
TTAGCTGTGGCaaaatttttcttcaatctAATCTTAGCTCCAAGATCAAG
ATCCACAGCTAAATAAGCAGGCTAGCAATGCTGACGAATGGGACGATTAT
GAAAGCGAATTAAAAGGAGCAAATAAGAAGATACAAGTAAGAAATAAACA
TTGTGTTTGGCATGAGTTTTACTATACTCTTAGCTAGCTTATCGTTGAAC
TCTTGCTGAGTTTCTAGTTCTAGGATGAATACATGCAAAATTTCCCCCAT
TTTACTAACTCAAAGGTCCCtacaaaggaaatattttacaCTATTCTTTT
CTattaagcaaaaatatttttctctcacACAGGAGTATCTTTGTGAATTA
TCAAGAGAAGACTTGATCTCGATAATAATCGAAACGAACAACGAAGGTAG
AGGTTCACTAGACAGCATCAAGGATTCATTAGCATTCGTCAAGGAAACAA
CTTCTGAGACCGAGACTACAGACGATGCTCAGGGAAGCCCACCCCCaccc
ccacccccccccccaccccaaCCCCCATCTTCATCGAAACCAGACTGGTG
TAAATGTTCGAAATGCAGAGACATGCCTACGTTAGTGGAGAACAAATGTT
GCGGGCGTAAAAACTGCATAACATTGCATGCAAAATTTGGTAAATTTTGT
CTAGATAAGGACATCTTAATTTTGAATATAAAAGCAAGAGCCGATATACG
AGCTGAGCAAGTAAACGTTGAGAAGAACAAATTACGTAAAGCCTCGTATA
GACAATTTATTCTTTGGAAACACGGTAGATTGGGAAGATACGAAAGGAGA
GTCGCCCCATCATGTGTTGTGTTAGCAGTACGTAGAAAGTTCCCCAGTAG
AGACGGCGTATACATGGGGTACAAGCCAAGATGAATCTAAAAATTGAACG
GAAACAATTCGGTGAAGTTTGGAGTTTTATAGATAGCAATATGATCGTTG
GTTTTGCATTGCGTTACATAGTtgaattatttcaatttttagagtcgttt
tgtaatttttatgtttatgttGTATTTGATGGTAAAATCTTATTCATTAC
ATTGCTATTTGAAGACTCATTTCATCG Coding sequence (CDS) from alignment at sc0001481:48114..49640+ >TCONS_00036571 ID=TCONS_00036571|Name=TCONS_00036571|organism=Clytia hemisphaerica|type=CDS|length=2475bp|location=Sequence derived from alignment at sc0001481:48114..49640+ (Clytia hemisphaerica)
atggatGATTTATTTTGTAAATGCAAAAACACCTGTTGTAGAAGAGATTC
CAACCTCAGAAAAGGGTGTCCCTGCAAAACAAGAGGGGTGAAATGCTCAG
AAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTGATTGTTGACCGTTGC
AAAAATAGAATCCAGCTTGCCGCACTCCAAGATCAAGATCCACAGCTAAA
TAAGCAGGCTAGCAATGCTGACGAATGGGACGATTATGAAAGCGAATTAA
AAGGAGCAAATAAGAAGATACAAGAGTATCTTTGTGAATTATCAAGAGAA
GACTTGATCTCGATAATAATCGAAACGAACAACGAAGGTAGAGGTTCACT
AGACAGCATCAAGGATTCATTAGCATTCGTCAAGGAAACAACTTCTGAGA
CCGAGACTACAGACGATGCTCAGGGAAGCCCACCCCCacccccacccccc
cccccaccccaaCCCCCATCTTCATCGAAACCAGACTGGTGTAAATGTTC
GAAATGCAGAGACATGCCTACGTTAGTGGAGAACAAATGTTGCGGGCGTA
AAAACTGCATAACATTGCATGCAAAATTTGGTAAATTTTGTCTAGATAAG
GACATCTTAATTTTGAATATAAAAGCAAGAGCCGATATACGAGCTGAGCA
AGTAAACGTTGAGAAGAACAAATTACGTAAAGCCTCGTATAGACAATTTA
TTCTTTGGAAACACGGTAGATTGGGAAGATACGAAAGGAGAGTCGCCCCA
TCATGTGTTGTGTTAGCAGTACGTAGAAAGTTCCCCAGTAGAGACGGCGT
ATACATGGGGTACAAGCCAAGATGAatggatGATTTATTTTGTAAATGCA
AAAACACCTGTTGTAGAAGAGATTCCAACCTCAGAAAAGGGTGTCCCTGC
AAAACAAGAGGGGTGAAATGCTCAGAAAAGTGTTCTTGTGGGAAAAGAAA
AAGAGGAGTGATTGTTGACCGTTGCAAAAATAGAATCCAGCTTGCCGCAC
TCCAAGATCAAGATCCACAGCTAAATAAGCAGGCTAGCAATGCTGACGAA
TGGGACGATTATGAAAGCGAATTAAAAGGAGCAAATAAGAAGATACAAGA
GTATCTTTGTGAATTATCAAGAGAAGACTTGATCTCGATAATAATCGAAA
CGAACAACGAAGGTAGAGGTTCACTAGACAGCATCAAGGATTCATTAGCA
TTCGTCAAGGAAACAACTTCTGAGACCGAGACTACAGACGATGCTCAGGG
AAGCCCACCCCCacccccacccccccccccaccccaaCCCCCATCTTCAT
CGAAACCAGACTGGTGTAAATGTTCGAAATGCAGAGACATGCCTACGTTA
GTGGAGAACAAATGTTGCGGGCGTAAAAACTGCATAACATTGCATGCAAA
ATTTGGTAAATTTTGTCTAGATAAGGACATCTTAATTTTGAATATAAAAG
CAAGAGCCGATATACGAGCTGAGCAAGTAAACGTTGAGAAGAACAAATTA
CGTAAAGCCTCGTATAGACAATTTATTCTTTGGAAACACGGTAGATTGGG
AAGATACGAAAGGAGAGTCGCCCCATCATGTGTTGTGTTAGCAGTACGTA
GAAAGTTCCCCAGTAGAGACGGCGTATACATGGGGTACAAGCCAAGATGA
atggatGATTTATTTTGTAAATGCAAAAACACCTGTTGTAGAAGAGATTC
CAACCTCAGAAAAGGGTGTCCCTGCAAAACAAGAGGGGTGAAATGCTCAG
AAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTGATTGTTGACCGTTGC
AAAAATAGAATCCAGCTTGCCGCACTCCAAGATCAAGATCCACAGCTAAA
TAAGCAGGCTAGCAATGCTGACGAATGGGACGATTATGAAAGCGAATTAA
AAGGAGCAAATAAGAAGATACAAGAGTATCTTTGTGAATTATCAAGAGAA
GACTTGATCTCGATAATAATCGAAACGAACAACGAAGGTAGAGGTTCACT
AGACAGCATCAAGGATTCATTAGCATTCGTCAAGGAAACAACTTCTGAGA
CCGAGACTACAGACGATGCTCAGGGAAGCCCACCCCCacccccacccccc
cccccaccccaaCCCCCATCTTCATCGAAACCAGACTGGTGTAAATGTTC
GAAATGCAGAGACATGCCTACGTTAGTGGAGAACAAATGTTGCGGGCGTA
AAAACTGCATAACATTGCATGCAAAATTTGGTAAATTTTGTCTAGATAAG
GACATCTTAATTTTGAATATAAAAGCAAGAGCCGATATACGAGCTGAGCA
AGTAAACGTTGAGAAGAACAAATTACGTAAAGCCTCGTATAGACAATTTA
TTCTTTGGAAACACGGTAGATTGGGAAGATACGAAAGGAGAGTCGCCCCA
TCATGTGTTGTGTTAGCAGTACGTAGAAAGTTCCCCAGTAGAGACGGCGT
ATACATGGGGTACAAGCCAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036571-exon-sc0001481-1491911889:48114..48452 | TCONS_00036571-exon-sc0001481-1491911889:48114..48452 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1510915933:48114..48452 | TCONS_00036571-exon-sc0001481-1510915933:48114..48452 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1575043694:48114..48452 | TCONS_00036571-exon-sc0001481-1575043694:48114..48452 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1491911889:48601..48699 | TCONS_00036571-exon-sc0001481-1491911889:48601..48699 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1510915933:48601..48699 | TCONS_00036571-exon-sc0001481-1510915933:48601..48699 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1575043694:48601..48699 | TCONS_00036571-exon-sc0001481-1575043694:48601..48699 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1491911889:48896..49640 | TCONS_00036571-exon-sc0001481-1491911889:48896..49640 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1510915933:48896..49640 | TCONS_00036571-exon-sc0001481-1510915933:48896..49640 | Clytia hemisphaerica | exon |
| TCONS_00036571-exon-sc0001481-1575043694:48896..49640 | TCONS_00036571-exon-sc0001481-1575043694:48896..49640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001481 | supercontig | sc0001481:48114..49640 + |
Blast
The following BLAST results are available for this feature:
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