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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036569 ID=TCONS_00036569|Name=TCONS_00036569|organism=Clytia hemisphaerica|type=transcript|length=1984bp
AGGTAATAACAGACCGGCTGCACTAGTGGGAGCAACATTCAATACAGCAC
GATTACATTGAAAAATTCGACGAACAAGACGTGTAATAATTTTTACAACC
TGAGACTTACCTGTACCAGCACAACCCTGTATGATGAGTCTTTTACAATT
GTCATATCCTACATTAAAATTCCCTCTGGCATATTCCAATAAAGTTTTGA
TGTTGTAGTATACTATTAACATTTGAATGTGATTCACCAATTNGAGTCTT
TTACAATTATCATATCCTACATTAAAATTCCCTCTGGCATATTCCAATAA
AGTTTTGATGTTGTAGTATACCATTAACATTTGAATGTGATTCACCAATT
TTGGGTCTACTTCTGGTAAATTACAAAGCCTTCCTTCTTTCTCATATGCT
TCAGTTGCTTGTTTAGATACATCTGACAGCCAGTTTTTTGTATCATTCAT
CTGTTCTTCTGAAAACGACTGAACACCTAACNCGATTTTTATCTTTGGTG
GTAATAGTTTTACGTCTGAGACAATATGAACTACATGAATGTAACAAAAC
CTTGTTAACTACATTGATATGAAAAGATTTAAGTTCCTCTTGGTTTCCTT
GACATAACAGGCATTTTTTTAATATATCTTTGTCAATGTTAGATAACGTT
CCATGAGGTTGAGgccaattttctttgtttggaATCCATTCTGATGGTTT
ATCATCAAAGTTTTTTTCCTGTCCTCCAGCTGGATGCATAGAAACAAATT
GAGGTGAGAAGATATTTTCTTCATTCAATTCATTTGTTTGCAACCATCTT
TCTAGATCCTTAGCAATATTAACACATGGATCATTTTCATCTTGTGCTAA
TATTGCTTTGACAATATTATNATCATATGCAATTTTAGCAAACTGCAACA
TCATTCTGACAGACTCTGTACAATAATCTGTATCTAAGAAATTAGCAAAG
GATTCGGTGTATGTTTCAAAGCCATTTTTTCAGATCTTCAACATTTCTCC
AAGTACCAGgatgaaatttcatcaaaagctCTCTTGAAAAGTCTTCACCT
GTTGGCCAAATCCAAAANACATggatcattttcattttgtgcTAATATTG
CTTTGACAATATTATAGTGCCAGTTAGAGAAATATAAGGAGTGTGAATGA
ATTTGTCCACGTGATTTAGCAAATTCATATTTACTCCAACACTCATCATA
TTGAAACAACTCCTTTAAcactgttttttttataattgttATGTCTCACA
TCAAAATATGTTGTAATAATGTGTTGATTCTGCAAAATGGCTTGGTGGCG
GAACCTAGAATCACTATTGAATTTAGCTCTCATATCATTTTCTGGTTCTC
CATTTATTTTGGCAAGGTATTTGATCAAAAGATTGTGTAGAGGCACCCAA
TGGTGCTCTGCACAAGTATTGGTATCAAAGTAAGTTGGATAAACATTGTT
TTCTTTTAACATAAAGAAACAAAGAGAATCCAACTCATGTTTTCTCTCTC
GCCAATATGGGGCTGTGTCTACAAGGTTAGCCCCCATAGATATGAACTTT
CGTGGGATAGATTGGTCATTATTTTCTAGCTTTTCAAGTAATTCATCCCT
TGTTAGATGTCTTTCATTTACTTGTTGATTAACACAAAAACTTCCTTGAT
TTAAAGCCTTTTGACGCAAATTAATATTCATAAGATGAAATTTTAGGAAT
CTGTGTGCAGGCACTCTGTTATCTTTACAATAATAGATATGCTCTATCCA
TtcctcaaatttcaaattccgTGCAGCCTTAATGGTATAATCACATGACC
CATTAATAAATATATGGGGATAGCACATGGTAAAAAACCCTTCTGTGGAG
AGTTCAGGAATAGGTTTAtctattctattgttttcatatAGTTTCCCAAC
ATCTGCTACACCACCTGCTGCAATAAATTCTTCAATATTAGTATTCTCCC
CAAGGAATGAACGTAATGCATTTTTAATGTTCTC Run BLAST on NCBI transcript from alignment at sc0001481:19188..21171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036569 ID=TCONS_00036569|Name=TCONS_00036569|organism=Clytia hemisphaerica|type=transcript|length=1984bp|location=Sequence derived from alignment at sc0001481:19188..21171+ (Clytia hemisphaerica)
AGGTAATAACAGACCGGCTGCACTAGTGGGAGCAACATTCAATACAGCAC
GATTACATTGAAAAATTCGACGAACAAGACGTGTAATAATTTTTACAACC
TGAGACTTACCTGTACCAGCACAACCCTGTATGATGAGTCTTTTACAATT
GTCATATCCTACATTAAAATTCCCTCTGGCATATTCCAATAAAGTTTTGA
TGTTGTAGTATACTATTAACATTTGAATGTGATTCACCAATTNGAGTCTT
TTACAATTATCATATCCTACATTAAAATTCCCTCTGGCATATTCCAATAA
AGTTTTGATGTTGTAGTATACCATTAACATTTGAATGTGATTCACCAATT
TTGGGTCTACTTCTGGTAAATTACAAAGCCTTCCTTCTTTCTCATATGCT
TCAGTTGCTTGTTTAGATACATCTGACAGCCAGTTTTTTGTATCATTCAT
CTGTTCTTCTGAAAACGACTGAACACCTAACNCGATTTTTATCTTTGGTG
GTAATAGTTTTACGTCTGAGACAATATGAACTACATGAATGTAACAAAAC
CTTGTTAACTACATTGATATGAAAAGATTTAAGTTCCTCTTGGTTTCCTT
GACATAACAGGCATTTTTTTAATATATCTTTGTCAATGTTAGATAACGTT
CCATGAGGTTGAGgccaattttctttgtttggaATCCATTCTGATGGTTT
ATCATCAAAGTTTTTTTCCTGTCCTCCAGCTGGATGCATAGAAACAAATT
GAGGTGAGAAGATATTTTCTTCATTCAATTCATTTGTTTGCAACCATCTT
TCTAGATCCTTAGCAATATTAACACATGGATCATTTTCATCTTGTGCTAA
TATTGCTTTGACAATATTATNATCATATGCAATTTTAGCAAACTGCAACA
TCATTCTGACAGACTCTGTACAATAATCTGTATCTAAGAAATTAGCAAAG
GATTCGGTGTATGTTTCAAAGCCATTTTTTCAGATCTTCAACATTTCTCC
AAGTACCAGgatgaaatttcatcaaaagctCTCTTGAAAAGTCTTCACCT
GTTGGCCAAATCCAAAANACATggatcattttcattttgtgcTAATATTG
CTTTGACAATATTATAGTGCCAGTTAGAGAAATATAAGGAGTGTGAATGA
ATTTGTCCACGTGATTTAGCAAATTCATATTTACTCCAACACTCATCATA
TTGAAACAACTCCTTTAAcactgttttttttataattgttATGTCTCACA
TCAAAATATGTTGTAATAATGTGTTGATTCTGCAAAATGGCTTGGTGGCG
GAACCTAGAATCACTATTGAATTTAGCTCTCATATCATTTTCTGGTTCTC
CATTTATTTTGGCAAGGTATTTGATCAAAAGATTGTGTAGAGGCACCCAA
TGGTGCTCTGCACAAGTATTGGTATCAAAGTAAGTTGGATAAACATTGTT
TTCTTTTAACATAAAGAAACAAAGAGAATCCAACTCATGTTTTCTCTCTC
GCCAATATGGGGCTGTGTCTACAAGGTTAGCCCCCATAGATATGAACTTT
CGTGGGATAGATTGGTCATTATTTTCTAGCTTTTCAAGTAATTCATCCCT
TGTTAGATGTCTTTCATTTACTTGTTGATTAACACAAAAACTTCCTTGAT
TTAAAGCCTTTTGACGCAAATTAATATTCATAAGATGAAATTTTAGGAAT
CTGTGTGCAGGCACTCTGTTATCTTTACAATAATAGATATGCTCTATCCA
TtcctcaaatttcaaattccgTGCAGCCTTAATGGTATAATCACATGACC
CATTAATAAATATATGGGGATAGCACATGGTAAAAAACCCTTCTGTGGAG
AGTTCAGGAATAGGTTTAtctattctattgttttcatatAGTTTCCCAAC
ATCTGCTACACCACCTGCTGCAATAAATTCTTCAATATTAGTATTCTCCC
CAAGGAATGAACGTAATGCATTTTTAATGTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036569-exon-sc0001481-1491911889:19188..21171 | TCONS_00036569-exon-sc0001481-1491911889:19188..21171 | Clytia hemisphaerica | exon |
| TCONS_00036569-exon-sc0001481-1510915933:19188..21171 | TCONS_00036569-exon-sc0001481-1510915933:19188..21171 | Clytia hemisphaerica | exon |
| TCONS_00036569-exon-sc0001481-1575043694:19188..21171 | TCONS_00036569-exon-sc0001481-1575043694:19188..21171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001481 | supercontig | sc0001481:19188..21171 + |
Blast
The following BLAST results are available for this feature:
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